mRNA_H-akashiwo_Contig1172.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1172.1.1
Unique NamemRNA_H-akashiwo_Contig1172.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A7S2V3G7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3G7_9STRA)

HSP 1 Score: 132 bits (333), Expect = 6.560e-36
Identity = 57/118 (48.31%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            +SI+V+LFI+HPNVSQY ++VF C + E G      + +L  D D EC+T ++ +WA +VGLPG++ Y  GIP+    ALH +RH+L  L  QL+YGFL+ G++ +YY+WEIW+ +RK
Sbjct:    8 MSIVVILFIIHPNVSQYTIDVFTCRQLEEG------RLFLAKDLDTECWTPEHTSWAFLVGLPGLICYTFGIPLIGYLALHGVRHQLSNLHVQLKYGFLYFGYRPKYYYWEIWVMVRK 119          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A485L0D3_9STRA (Aste57867_14103 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0D3_9STRA)

HSP 1 Score: 127 bits (320), Expect = 8.110e-32
Identity = 61/119 (51.26%), Postives = 84/119 (70.59%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDK-WYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            LSIIVL+F+VHP ++    +++ C+  E G  G  D+ +YL PD DV+CYT+ +W W ++VGLPG++ Y +GIP  A   LH  RHELD    +LQ+GFL+ G+K EYYFWEIWI +RK
Sbjct: 4141 LSIIVLMFLVHPGLTNQIFQLYTCT--ELGYDGIGDRLYYLNPDLDVQCYTSSHWKWMLLVGLPGMIIYTLGIPFFAFRVLHARRHELDLPRTKLQFGFLYDGYKLEYYFWEIWIMMRK 4257          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A397FZZ3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FZZ3_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.550e-31
Identity = 51/117 (43.59%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 SIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            S+IV++F++HP+++ +  ++FAC++  +   G P  ++L PD DV+CYTA ++ W   VG+P ++ + +GIP+ A Y +++ RH LD LS +L+YGFL+ GF+REY++WEIW+  RK
Sbjct:  295 SVIVIMFLIHPSLTNHLFQMFACTQLGSDETGAP-LYFLNPDLDVKCYTASHYRWMYCVGIPALIGFTLGIPVFALYVVYSCRHNLDDLSTKLEYGFLYIGFRREYFYWEIWVMTRK 410          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A397BFI8_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BFI8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.400e-31
Identity = 51/117 (43.59%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 SIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            S+IV++F++HP+++ +  ++FAC++  +   G P  ++L PD DV+CYTA ++ W   VG+P ++ + +GIP+ A Y +++ RH LD LS +L+YGFL+ GF+REY++WEIW+  RK
Sbjct: 1015 SVIVIMFLIHPSLTNHLFQMFACTQLGSDETGAP-LYFLNPDLDVKCYTASHYRWMYCVGIPALVGFTLGIPVFALYVVYSCRHNLDDLSTKLEYGFLYIGFRREYFYWEIWVMTRK 1130          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: W4FIT5_9STRA (CUB domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIT5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 9.720e-31
Identity = 51/117 (43.59%), Postives = 86/117 (73.50%), Query Frame = 1
Query:    4 SIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            S+IV++F++HP+++ +  ++FAC++  +   G P  ++L PD DV+CYTA ++ W   VG+P ++ + +GIP+ A Y +++ RH LD LS +L+YGFL+ GF+REY++WEIW+  RK
Sbjct: 4008 SVIVIMFLIHPSLTNHLFQMFACTQLGSDETGAP-LYFLNPDLDVKCYTASHFRWMYCVGIPALIGFTLGIPVFALYVVYSCRHNLDDLSTKLEYGFLYIGFRREYFYWEIWVMTRK 4123          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A6G0WL20_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WL20_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.860e-29
Identity = 50/118 (42.37%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            LSIIV+LF++HP++++   E+FAC++  +  +GN   ++L PD DV+CYT  ++ W   VG+PG+L +  G+P+ A + L + RH L+ ++ +L++GF++ GFK +YY+WEIW+ +RK
Sbjct: 1042 LSIIVILFLIHPSLTEKLFEMFACTQLGSDAHGNA-LYFLNPDLDVQCYTDSHYRWMYYVGVPGLLGFTFGVPVLALFILFSRRHRLELMTTKLEFGFMYMGFKPKYYYWEIWVMMRK 1158          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A485K2N8_9STRA (Aste57867_286 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2N8_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.290e-27
Identity = 49/118 (41.53%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            LSIIV++F++HP++++   ++F+CS+     +GN   +++ PD DV CYT  ++ W   VG+P ++ Y +GIP  A   LH  RH L+ L  +L++GFL+TGFK ++++WEIW+ +RK
Sbjct: 4004 LSIIVIMFLIHPSLTKTIFQMFSCSQLGTDMHGNA-LYFMDPDLDVACYTTSHYRWIYCVGIPSLIIYTLGIPTLAYTILHIHRHNLNNLKTKLEFGFLYTGFKLKHFYWEIWVMMRK 4120          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A425D3B9_9STRA (CUB domain-containing protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D3B9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 4.250e-27
Identity = 52/118 (44.07%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            LSIIVL+F+VHP +S    +++ C++     +G+   ++L PD DV+CY A ++ W + VG+PG++ Y +GIP  A + L   RHELD    +LQ+GFL+ G+K ++Y+WEIWI +RK
Sbjct: 3940 LSIIVLMFLVHPGLSNQIFQLYTCTELGYNEHGDR-LFFLNPDLDVQCYDATHYKWMLFVGIPGLVLYTLGIPYFAFHQLRRRRHELDQPRTKLQFGFLYDGYKLDHYYWEIWIMMRK 4056          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A418CKT4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418CKT4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.550e-27
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            LSIIVL+F+VHP +S    +++ C++     +G    ++L PD DV+CY A ++ W + VG+PG++ Y +GIP  A + L   RHELD    +LQ+GFL+ G+K ++Y+WEIWI +RK
Sbjct:  237 LSIIVLMFLVHPGLSNQIFQLYTCTELGYNEHG-ARLFFLNPDLDVQCYDATHYKWMLFVGIPGLVLYTLGIPYFAFHQLRRRRHELDQPRTKLQFGFLYDGYKLDHYYWEIWIMMRK 353          
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Match: A0A397B6B5_9STRA (Beta_helix domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B6B5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 7.730e-27
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYTADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLFTGFKREYYFWEIWITIRK 354
            LSIIVL+F+VHP +S    +++ C++     +G    ++L PD DV+CY A ++ W + VG+PG++ Y +GIP  A + L   RHELD    +LQ+GFL+ G+K ++Y+WEIWI +RK
Sbjct: 1322 LSIIVLMFLVHPGLSNQIFQLYTCTELGYNEHG-ARLFFLNPDLDVQCYDATHYKWMLFVGIPGLVLYTLGIPYFAFHQLRRRRHELDQPRTKLQFGFLYDGYKLDHYYWEIWIMMRK 1438          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1172.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V3G7_9STRA6.560e-3648.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A485L0D3_9STRA8.110e-3251.26Aste57867_14103 protein n=1 Tax=Aphanomyces stella... [more]
A0A397FZZ3_9STRA3.550e-3143.59Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397BFI8_9STRA9.400e-3143.59Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
W4FIT5_9STRA9.720e-3143.59CUB domain-containing protein n=2 Tax=Aphanomyces ... [more]
A0A6G0WL20_9STRA2.860e-2942.37Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485K2N8_9STRA2.290e-2741.53Aste57867_286 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A425D3B9_9STRA4.250e-2744.07CUB domain-containing protein n=9 Tax=Aphanomyces ... [more]
A0A418CKT4_9STRA4.550e-2744.07Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A397B6B5_9STRA7.730e-2744.07Beta_helix domain-containing protein (Fragment) n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1172contigH-akashiwo_Contig1172:135409..136574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008876874.1
Model size358
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons4
Evalue4.47e-27
EggNOG OGs2CSM5@1|root,2S49T@2759|Eukaryota
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.7695386-CDS-H-akashiwo_Contig1172:135408..1354681681387105.7695386-CDS-H-akashiwo_Contig1172:135408..135468Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 135409..135468 +
1681387105.7826843-CDS-H-akashiwo_Contig1172:135633..1357621681387105.7826843-CDS-H-akashiwo_Contig1172:135633..135762Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 135634..135762 +
1681387105.7925446-CDS-H-akashiwo_Contig1172:135942..1360671681387105.7925446-CDS-H-akashiwo_Contig1172:135942..136067Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 135943..136067 +
1681387105.8026721-CDS-H-akashiwo_Contig1172:136532..1365721681387105.8026721-CDS-H-akashiwo_Contig1172:136532..136572Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 136533..136572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1172.1.1prot_H-akashiwo_Contig1172.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1172 135409..136572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1172.1.1

>prot_H-akashiwo_Contig1172.1.1 ID=prot_H-akashiwo_Contig1172.1.1|Name=mRNA_H-akashiwo_Contig1172.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
LSIIVLLFIVHPNVSQYALEVFACSKFENGTYGNPDKWYLLPDHDVECYT
ADYWAWAMMVGLPGILAYAVGIPIAAGYALHTIRHELDTLSAQLQYGFLF
TGFKREYYFWEIWITIRK
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mRNA from alignment at H-akashiwo_Contig1172:135409..136574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1172.1.1 ID=mRNA_H-akashiwo_Contig1172.1.1|Name=mRNA_H-akashiwo_Contig1172.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1166bp|location=Sequence derived from alignment at H-akashiwo_Contig1172:135409..136574+ (Heterosigma akashiwo CCMP452)
CTGAGCATCATTGTGCTGCTGTTCATCGTGCATCCCAACGTGTCCCAGTA CGCGCTGGAGGTGTGTCACTGCCCCACCTTCCCCTCTTTGACAGTCGCCT ATATGTTCTATGCATGAGTGTTTGGTTGATAGCTGTGAGCCCTGTGCTTT GACCACACTTTTTCCATGCCAAAGACAGTGTTTTTATTTCTCTTATCATC TTATATTACTGGTTCTTCTGTGTAGGTATTTGCCTGCAGTAAATTCGAGA ATGGCACATATGGAAACCCTGATAAGTGGTACCTCCTTCCTGATCATGAT GTGGAGTGCTACACAGCAGACTATTGGGCATGGGCCATGATGGTTGGCTT GCCGGTACGTACTGCACACTACGACTGCTGACAACATTTTGGGCAAAGGT GTTATATACATATATCATACATGTAATCAAACGGGCGTAGAACTCATCTT GGGATGCATGTCAAAGGTTCTTCCCTTCGATCACCTGCACTTCATCTTGC CATACAGAAACAAAGGCACCCCCCCCCTCCCCAGGGCATCTTGGCTTACG CCGTGGGCATCCCCATCGCGGCGGGCTACGCGTTGCACACTATCCGGCAC GAGCTGGACACGCTCAGCGCCCAGCTGCAGTACGGCTTCCTCTTCACGGG CTTCAAGCGGTGGGTGCGCGCCCATTGCGGTTGTCGCCGCCGCCGCCGCT GCCCCCGCCAACGGGCGGAGGGGGGGGGGAGGTCACCGCACCATCCTCTC TTCACCCTGGCCCCTGCTGCTGTCTGGCCACTAACGGTGTATGGTACAAG TGGTTCCGCAACTGGACTTGGCAGTGTGAGCCCCCTTCAAGTGAAAAGAA GAGACACGGAGGAGGGCGAAACTGCGGGCGGCGCGGCGATGCGATGCGTG TCCTCTAGCTTGGACAGGACCAAGAAAGCTGTGATGCGTTTTCACTTTCT TCTGAACAAATATTATTGGTCACAAGACGTGCTGCCAGAACCAAAATGCA TTATTGTGCCTTTGCTATATATATATCACCAAACACTGTATCATAGTTGC CATTGCCCCAAAAAAAAAAAAAACTGTACTAGTATCAAACTTATCGCCCC CCCCCCAATCTTCTTTTTTTGCAGCGAGTACTACTTCTGGGAGATCTGGA TCACCATTCGCAAGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1172:135409..136574+

>mRNA_H-akashiwo_Contig1172.1.1 ID=mRNA_H-akashiwo_Contig1172.1.1|Name=mRNA_H-akashiwo_Contig1172.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig1172:135409..136574+ (Heterosigma akashiwo CCMP452)
CTGAGCATCATTGTGCTGCTGTTCATCGTGCATCCCAACGTGTCCCAGTA
CGCGCTGGAGGTATTTGCCTGCAGTAAATTCGAGAATGGCACATATGGAA
ACCCTGATAAGTGGTACCTCCTTCCTGATCATGATGTGGAGTGCTACACA
GCAGACTATTGGGCATGGGCCATGATGGTTGGCTTGCCGGGCATCTTGGC
TTACGCCGTGGGCATCCCCATCGCGGCGGGCTACGCGTTGCACACTATCC
GGCACGAGCTGGACACGCTCAGCGCCCAGCTGCAGTACGGCTTCCTCTTC
ACGGGCTTCAAGCGCGAGTACTACTTCTGGGAGATCTGGATCACCATTCG
CAAG
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