mRNA_H-akashiwo_Contig1172.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1172.3.1
Unique NamemRNA_H-akashiwo_Contig1172.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1172.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1172contigH-akashiwo_Contig1172:138108..138752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size152
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.7136436-UTR-H-akashiwo_Contig1172:138107..1381091681387105.7136436-UTR-H-akashiwo_Contig1172:138107..138109Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1172 138108..138109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.724309-CDS-H-akashiwo_Contig1172:138109..1381921681387105.724309-CDS-H-akashiwo_Contig1172:138109..138192Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 138110..138192 +
1681387105.733107-CDS-H-akashiwo_Contig1172:138685..1387521681387105.733107-CDS-H-akashiwo_Contig1172:138685..138752Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1172 138686..138752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1172.3.1prot_H-akashiwo_Contig1172.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1172 138110..138752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1172.3.1

>prot_H-akashiwo_Contig1172.3.1 ID=prot_H-akashiwo_Contig1172.3.1|Name=mRNA_H-akashiwo_Contig1172.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
MLFNLGFVCYFIKNVWRAYLESLLERARGIPILKKYVPAPREKDEDDRAL
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mRNA from alignment at H-akashiwo_Contig1172:138108..138752+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1172.3.1 ID=mRNA_H-akashiwo_Contig1172.3.1|Name=mRNA_H-akashiwo_Contig1172.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=645bp|location=Sequence derived from alignment at H-akashiwo_Contig1172:138108..138752+ (Heterosigma akashiwo CCMP452)
TCATGCTTTTCAACCTTGGCTTCGTCTGCTACTTTATCAAAAATGTGTGG
CGTGCCTACTTGGAGAGCTTGCTGGAGAGAGCACGGTAAGGGTGTGACAG
TTTACATGAATGCCTCTTGCCTTTTCACGAGGAAGCCACATAAATAATAA
GACATTACCAACTATGTACTACTCAAACCCCATTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTAAATTTGATTTGTCAGTGTACGTTCATACATACTTT
ATTATACAACGCCATCCCTGTCGTACTTGTATGTACACACACACACATAA
TAAAAGAATGGTATACATCATACTGGTGATATGCTTGCTGCCCTTTGTTG
ATTTTACTGGGCGAGTTTTCTCTCATTGAGGTGTATATATAGTAGAAAGA
GGGGACCACCGAAACAATACATAGTTGACTTTTTTTTTTTCTACGAGGCA
TGAAGAAATCTATGTATACATATATTTAAATCAGGTCTACCGGAAAAAAA
AATCACACGCTTGAGCATTGTTATTGTTTTCTGCTCATATATCACACACT
ATACCTGACTACTTTTCTTTGTCTGTAGAGGCATACCAATCCTGAAAAAG
TATGTTCCCGCACCAAGGGAGAAAGATGAAGATGACAGGGCCTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1172:138108..138752+

>mRNA_H-akashiwo_Contig1172.3.1 ID=mRNA_H-akashiwo_Contig1172.3.1|Name=mRNA_H-akashiwo_Contig1172.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig1172:138108..138752+ (Heterosigma akashiwo CCMP452)
ATGCTTTTCAACCTTGGCTTCGTCTGCTACTTTATCAAAAATGTGTGGCG
TGCCTACTTGGAGAGCTTGCTGGAGAGAGCACGAGGCATACCAATCCTGA
AAAAGTATGTTCCCGCACCAAGGGAGAAAGATGAAGATGACAGGGCCTTG
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