mRNA_H-akashiwo_Contig1171.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1171.4.1
Unique NamemRNA_H-akashiwo_Contig1171.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1171.4.1 vs. uniprot
Match: D7FTR3_ECTSI (Similar to Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.430e-22
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  202 LLIGGNFTLDGQQANMAEYDPLTNSWSTSAIPHLYLYGAANGVVLDMIV-----HPMTPYDDLYVVGAFDTTCKVSQVQYCNVGLW 444
            L++GGNFTL+G+  N+A+YDP++ SW +   P LYLYG A G+V D+ V     H   PYD LYVVGAFDT CK  Q QYC+ G+W
Sbjct:   41 LVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVW 126
[Close]
BLAST of mRNA_H-akashiwo_Contig1171.4.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.540e-22
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  202 LLIGGNFTLDGQQANMAEYDPLTNSWSTSAIPHLYLYGAANGVVLDMIV-----HPMTPYDDLYVVGAFDTTCKVSQVQYCNVGLW 444
            L++GGNFTL+G+  N+A+YDP++ SW +   P LYLYG A G+V D+ V     H   PYD LYVVGAFDT CK  Q QYC+ G+W
Sbjct:  322 LVVGGNFTLNGKSTNVAQYDPVSESWYSRFEPQLYLYGKAAGMVSDLAVWRAGSHDANPYDLLYVVGAFDTICKACQQQYCSAGVW 407
[Close]
BLAST of mRNA_H-akashiwo_Contig1171.4.1 vs. uniprot
Match: A0A7R9YBX3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBX3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.250e-15
Identity = 50/120 (41.67%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:  169 CSYFWEGLSRV-LLIGGNFTLDG-------QQANMAEYDPLTNS------WSTSAIPHLYLYGAANGVVLDMIVHPMTP------YDDLYVVGAFDTTCKVSQVQYCNVGLWHKHQFLQV 468
            CS    G  R  LL+GGNFT+ G         AN+A++ P   S      W  +  P LYLYGA+ GVVLDM+V+          YD L + GAFD+TC+  Q QYC+VG W      QV
Sbjct:   14 CSVTAAGAPRSSLLLGGNFTVRGFTQDEASLTANLAQFTPARGSKGRIGRWEAAYEPRLYLYGASGGVVLDMVVNDTAKRLAGEDYDALIIGGAFDSTCRTCQAQYCSVGAWEGRNLKQV 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1171.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTR3_ECTSI2.430e-2254.65Similar to Serine/threonine-protein kinase CTR1 n=... [more]
A0A6H5J8D6_9PHAE2.540e-2254.65Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7R9YBX3_9STRA1.250e-1541.67Hypothetical protein (Fragment) n=2 Tax=Pinguiococ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1171contigH-akashiwo_Contig1171:309955..310708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTR3
PFAMsPkinase_Tyr
Model size470
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.46e-23
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
Descriptionprotein kinase activity
Cds size384
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.6510663-CDS-H-akashiwo_Contig1171:309954..3100411681387105.6510663-CDS-H-akashiwo_Contig1171:309954..310041Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1171 309955..310041 -
1681387105.6600509-CDS-H-akashiwo_Contig1171:310219..3103251681387105.6600509-CDS-H-akashiwo_Contig1171:310219..310325Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1171 310220..310325 -
1681387105.6678803-CDS-H-akashiwo_Contig1171:310433..3106241681387105.6678803-CDS-H-akashiwo_Contig1171:310433..310624Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1171 310434..310624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.6839688-UTR-H-akashiwo_Contig1171:310624..3107081681387105.6839688-UTR-H-akashiwo_Contig1171:310624..310708Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1171 310625..310708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1171.4.1prot_H-akashiwo_Contig1171.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1171 309955..310624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1171.4.1

>prot_H-akashiwo_Contig1171.4.1 ID=prot_H-akashiwo_Contig1171.4.1|Name=mRNA_H-akashiwo_Contig1171.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=128bp
MLQASESLGPLFRWRQSKKSHLLFLVVICSYFWEGLSRVLLIGGNFTLDG
QQANMAEYDPLTNSWSTSAIPHLYLYGAANGVVLDMIVHPMTPYDDLYVV
GAFDTTCKVSQVQYCNVGLWHKHQFLQV
back to top

mRNA from alignment at H-akashiwo_Contig1171:309955..310708-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1171.4.1 ID=mRNA_H-akashiwo_Contig1171.4.1|Name=mRNA_H-akashiwo_Contig1171.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=754bp|location=Sequence derived from alignment at H-akashiwo_Contig1171:309955..310708- (Heterosigma akashiwo CCMP452)
TGCCGAACCAGTTGCAGTTGGCAAAAAACCAATAAAAAAATTAAAATGTT
TCGTCGATTCAACCCTCATAACATTCTGTGAAGGATGTTGCAAGCATCAG
AGAGCTTGGGACCCCTGTTCAGATGGCGGCAGTCCAAGAAAAGCCACTTG
CTTTTTCTTGTGGTCATCTGTTCATATTTTTGGGAGGGATTATCCCGTGT
GCTGTTGATTGGCGGAAACTTTACGCTCGATGGACAACAAGCAAACATGG
CAGAGTATGATCCCTTGACCAACAGGTGTTTGAGCAACATATGGCACATT
AAGTGGTTTTGTTGTAGCCCTTAGTTCCCCAATCTTCAACCATAAGTTAA
TGGCCAGGCTTTCCCCCCTTTTCCGTTTGCCAGCTGGTCAACAAGTGCAA
TTCCCCACCTTTATCTCTATGGCGCTGCCAATGGAGTTGTGTTGGACATG
ATTGTCCATCCTATGACCCCCTATGATGATCTGTATGTGGTAAGTAACAA
ATTAACTTTTCCATTCCTGCTTGTGCTCTGTATATATATATATATATATT
TTGATATAGAAGAAAAGAAAAAAAGGAGAAGGGAAGGTACCTAGCCGTGC
AGTGAACATGACCAGCTTTTCATTCTTATTTGATGATACTGATACAAAAA
ATAATAACTGGTTGAAGGTTGGAGCATTTGACACCACTTGCAAGGTCAGT
CAGGTTCAGTATTGCAACGTGGGCCTCTGGCACAAGCACCAGTTTCTACA
GGTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1171:309955..310708-

>mRNA_H-akashiwo_Contig1171.4.1 ID=mRNA_H-akashiwo_Contig1171.4.1|Name=mRNA_H-akashiwo_Contig1171.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=384bp|location=Sequence derived from alignment at H-akashiwo_Contig1171:309955..310708- (Heterosigma akashiwo CCMP452)
ATGTTGCAAGCATCAGAGAGCTTGGGACCCCTGTTCAGATGGCGGCAGTC
CAAGAAAAGCCACTTGCTTTTTCTTGTGGTCATCTGTTCATATTTTTGGG
AGGGATTATCCCGTGTGCTGTTGATTGGCGGAAACTTTACGCTCGATGGA
CAACAAGCAAACATGGCAGAGTATGATCCCTTGACCAACAGCTGGTCAAC
AAGTGCAATTCCCCACCTTTATCTCTATGGCGCTGCCAATGGAGTTGTGT
TGGACATGATTGTCCATCCTATGACCCCCTATGATGATCTGTATGTGGTT
GGAGCATTTGACACCACTTGCAAGGTCAGTCAGGTTCAGTATTGCAACGT
GGGCCTCTGGCACAAGCACCAGTTTCTACAGGTG
back to top