mRNA_H-akashiwo_Contig117.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig117.14.1
Unique NamemRNA_H-akashiwo_Contig117.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig117.14.1 vs. uniprot
Match: A0A7S3XKZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKZ6_HETAK)

HSP 1 Score: 166 bits (420), Expect = 2.630e-46
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1 
Query:  322 MDTNEWSFLVGTGDAEHYLTGGSCGPGTPQYVVATYDATSQVAQLYVNGNLTANETVPSYSATNTPLVVGGGYVGLSNYT 561
            MDTNEWSFLVGTGDAEHYLTGGSCGPGTPQYVVATYDATSQVAQLYVNGNLTANETVPSYSATNTPLVVGGGYVGLSNYT
Sbjct:    1 MDTNEWSFLVGTGDAEHYLTGGSCGPGTPQYVVATYDATSQVAQLYVNGNLTANETVPSYSATNTPLVVGGGYVGLSNYT 80
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BLAST of mRNA_H-akashiwo_Contig117.14.1 vs. uniprot
Match: UPI00030520DA (FG-GAP-like repeat-containing protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) TaxID=195253 RepID=UPI00030520DA)

HSP 1 Score: 53.9 bits (128), Expect = 4.290e-5
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 SFWAKPIANQPTVAVVSASQS---TQ--GVSVLCMDTNEWSFLVGTGDAEHYLTGGSCGPGTPQYVVATYDATSQVAQLYVNGNLTANETVPSYSATNTPLVVG 531
            +F A P A     +  + ++S   TQ  G S+   + N   F  G GDA      GS  P T  YV ATY++++QVA LYVNG L A +T   ++    P+V+G
Sbjct:  587 TFVANPFAEVAHTSTTTQTESLSFTQVTGWSIRTGNNNNIVFNAGGGDA----VSGSLNPNTWYYVAATYNSSTQVASLYVNGELVAQQTGSRFAPNAVPVVLG 686
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BLAST of mRNA_H-akashiwo_Contig117.14.1 vs. uniprot
Match: A0A1J7BLB7_9ACTN (LamGL domain-containing protein n=2 Tax=Streptomyces gilvigriseus TaxID=1428644 RepID=A0A1J7BLB7_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 7.530e-5
Identity = 48/146 (32.88%), Postives = 63/146 (43.15%), Query Frame = 1 
Query:   97 SGVTTVPSVIPAGDGVSFYFDGNSNSTVEVDPTAKFNFFEDRTFSISFWAKPIANQPTVAVVSASQSTQGVSVLCMDTN-------EWSFLVGTGDAEHY----LTGGSCGPGTPQYVVATYDATSQVAQLYVNGNL--TANETVP 495
            SG TT  S    G  ++F  DG + +     P         R+FS+S W  P A+ PT     ASQ     S   +  N       EW F +   D  +      T      GT  ++VATY+AT+Q A LYVNG L   AN+  P
Sbjct: 1383 SGTTTWTSDTTRGQTLAF--DGQTGAAESAGPVLD----TTRSFSLSAWVDP-ASLPTHNATIASQDATTNSAFDLQYNYAQNGSPEWDFALAQTDTSNAQFANATATGVTAGTWTHLVATYNATTQTAYLYVNGTLQGVANQVTP 1521
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig117.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3XKZ6_HETAK2.630e-46100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00030520DA4.290e-536.54FG-GAP-like repeat-containing protein n=1 Tax=Syne... [more]
A0A1J7BLB7_9ACTN7.530e-532.88LamGL domain-containing protein n=2 Tax=Streptomyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig117contigH-akashiwo_Contig117:1005795..1007409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog285535.JOEY01000005_gene7896
PFAMsLaminin_G_3
Model size563
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.28e-06
EggNOG OGsCOG2755@1|root,COG2755@2|Bacteria,2GK5H@201174|Actinobacteria
DescriptionAlpha-1,2-mannosidase
Cds size561
COG categoryE
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig117.14.1prot_H-akashiwo_Contig117.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig117 1005795..1007409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387105.5330093-CDS-H-akashiwo_Contig117:1005794..10058781681387105.5330093-CDS-H-akashiwo_Contig117:1005794..1005878Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1005795..1005878 +
1681387105.543906-CDS-H-akashiwo_Contig117:1006018..10061761681387105.543906-CDS-H-akashiwo_Contig117:1006018..1006176Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1006019..1006176 +
1681387105.5533352-CDS-H-akashiwo_Contig117:1006346..10063981681387105.5533352-CDS-H-akashiwo_Contig117:1006346..1006398Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1006347..1006398 +
1681387105.563835-CDS-H-akashiwo_Contig117:1006625..10067311681387105.563835-CDS-H-akashiwo_Contig117:1006625..1006731Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1006626..1006731 +
1681387105.5729456-CDS-H-akashiwo_Contig117:1006885..10069881681387105.5729456-CDS-H-akashiwo_Contig117:1006885..1006988Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1006886..1006988 +
1681387105.5822434-CDS-H-akashiwo_Contig117:1007351..10074091681387105.5822434-CDS-H-akashiwo_Contig117:1007351..1007409Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig117 1007352..1007409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig117.14.1

>prot_H-akashiwo_Contig117.14.1 ID=prot_H-akashiwo_Contig117.14.1|Name=mRNA_H-akashiwo_Contig117.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=187bp
DLDADLYLDFDADQLKSRICYDEAQNIEGTIGSGVTTVPSVIPAGDGVSF
YFDGNSNSTVEVDPTAKFNFFEDRTFSISFWAKPIANQPTVAVVSASQST
QGVSVLCMDTNEWSFLVGTGDAEHYLTGGSCGPGTPQYVVATYDATSQVA
QLYVNGNLTANETVPSYSATNTPLVVGGGYVGLSNYT
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mRNA from alignment at H-akashiwo_Contig117:1005795..1007409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig117.14.1 ID=mRNA_H-akashiwo_Contig117.14.1|Name=mRNA_H-akashiwo_Contig117.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1615bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1005795..1007409+ (Heterosigma akashiwo CCMP452)
GACCTCGATGCCGATCTGTACTTGGATTTCGATGCTGATCAGCTGAAATC
GAGAATATGTTATGATGAAGCACAAAATATTGAGGTCCGAAAATGCTAAA
GATATATAGATCAATGGAGATTGGGAAGTGTTCTTACCTTAAGTGCGTGA
TGTATTCAGTTGTTCAGCGCTTGTGTTTTGTGAATATTATACAAGTAACA
AAAAATCCACTTAATTTTCAACAGGGAACGATCGGAAGTGGAGTCACTAC
AGTTCCAAGTGTGATTCCTGCTGGTGACGGCGTCTCATTCTATTTTGATG
GAAACTCAAACTCTACTGTTGAGGTTGACCCTACAGCTAAATTTAACTTT
TTTGAGGACAGGACTTTCTCCATTTCATTTTGGTAAGCTTTTATGCTCTC
ACTGTTTTTGGTGTTAATCGGTAACTGTGAAGCATAGCCAGTCAAGCAAA
TCAGTTGTTTGCATGAAAACAGCAGCAAATAATATTCAGTCAAATACTTG
CATGGTTATTTGCGCGCTTCATTGCATGGGTGTGGTTGTGTCTTTTTGTC
AGGGCGAAGCCCATAGCAAACCAACCAACAGTGGCTGTAGTTTCAGCTTC
ACAGGTAAACAAAGGCATGATTCACAGCTTCACAGACACTACCTTGATGA
TATTACACCCTCAGTCCAACCTGCACGTGGTTGATTCTTCAAATAACATG
TGGCTTCTTTCCTCATCAAATGATTATAATGGCACAGATCTATGGTGCAT
GTATATTCGCCTATCAAACACCCGCTCGAGGTTATTGCTTATCCTCTCCT
CTTGATGCACAACCCTTGCTGTTCTTACCAGAGTACCCAGGGAGTCAGTG
TACTCTGTATGGACACCAATGAGTGGTCCTTTCTTGTGGGAACTGGTGAT
GCAGAGCACTACCTGACGGGCGGCTCCTGTGGTCCAGGTGTGGTATAGAA
TTTGAGGATCACTTGTGTCTGGTGTTTTCCTCTTTGCCGTCGGTTTTTCA
TATTTGGCGTGAAATATCTTCAGTATTATAGTGTATTCTGGACTATTGTT
GCACATTGAGCACACAATGAAAATTCTTTTCTACCTCCCAGGTACTCCCC
AGTACGTCGTTGCCACATATGACGCAACCAGCCAGGTAGCGCAGCTGTAT
GTGAACGGAAACCTCACAGCCAATGAGACTGTCCCATCTTACAGGTGTCT
AGACACAGTATCCACACCTTGCCACAATACTTCTAGTGGTATGAATATTC
ATACTGTTGTACCAGTATCATCATCACACGCCCCATGCACCACCACATTA
TTATTATGGTATTTATTATTTTTTATTGTTATATAATTATTATTATTCTA
TACTTCGACAATCAACAACAACAAGTCATAATACTGGAGCATTCAATTCA
CAAAAATTATGATGATGACAAGGATGGCGTCAGACTCGGTTTCCAGTCAT
GCTGGTCGTCATGTACATGTGCGTAGATCAAGAAAGACATCTCCCTCATC
AACGCGACAATAATCACTTAGGTTCGATGCCCCCCCCGTAAAAAACAACA
ACAACAGCGCGACCAACACGCCGCTGGTGGTCGGCGGCGGCTACGTGGGG
CTCTCCAACTACACC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig117:1005795..1007409+

>mRNA_H-akashiwo_Contig117.14.1 ID=mRNA_H-akashiwo_Contig117.14.1|Name=mRNA_H-akashiwo_Contig117.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=561bp|location=Sequence derived from alignment at H-akashiwo_Contig117:1005795..1007409+ (Heterosigma akashiwo CCMP452)
GACCTCGATGCCGATCTGTACTTGGATTTCGATGCTGATCAGCTGAAATC
GAGAATATGTTATGATGAAGCACAAAATATTGAGGGAACGATCGGAAGTG
GAGTCACTACAGTTCCAAGTGTGATTCCTGCTGGTGACGGCGTCTCATTC
TATTTTGATGGAAACTCAAACTCTACTGTTGAGGTTGACCCTACAGCTAA
ATTTAACTTTTTTGAGGACAGGACTTTCTCCATTTCATTTTGGGCGAAGC
CCATAGCAAACCAACCAACAGTGGCTGTAGTTTCAGCTTCACAGAGTACC
CAGGGAGTCAGTGTACTCTGTATGGACACCAATGAGTGGTCCTTTCTTGT
GGGAACTGGTGATGCAGAGCACTACCTGACGGGCGGCTCCTGTGGTCCAG
GTACTCCCCAGTACGTCGTTGCCACATATGACGCAACCAGCCAGGTAGCG
CAGCTGTATGTGAACGGAAACCTCACAGCCAATGAGACTGTCCCATCTTA
CAGCGCGACCAACACGCCGCTGGTGGTCGGCGGCGGCTACGTGGGGCTCT
CCAACTACACC
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