mRNA_H-akashiwo_Contig1155.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1155.5.1
Unique NamemRNA_H-akashiwo_Contig1155.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1155.5.1 vs. uniprot
Match: A0A7S3UWV5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWV5_HETAK)

HSP 1 Score: 719 bits (1857), Expect = 2.970e-260
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = -1
Query:    1 AVAAATNTAIKIAPAAKAKVPNACHKNNKDTSTCVPTAYFIGASKCATTSFALAFKEHPFMRGVAWGHESEALSHGAPCPSSHMVNSVKAHMSCTSDGANVGGLEVKLSNSKRLYANGTSNDKGTLPLTYFYKPDALFYPHAARNLALAESKYPKVGYPYPPKTSRFLVMLREPIGRTFSSWSFKVESGGGKETRPWVESVRHGLGVLASTLNCLDRETKKGSSVGLALENMCAATHFDPRSSYFHHVMKSVYSLQFEVWFKRFSKSQFHILFMEDFIRDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHTLDAPTKGTREALDLAFAPFNCRLAQQL 1068
            AVAAATNTAIKIAPAAKAKVPNACHKNNKDTSTCVPTAYFIGASKCATTSFALAFKEHPFMRGVAWGHESEALSHGAPCPSSHMVNSVKAHMSCTSDGANVGGLEVKLSNSKRLYANGTSNDKGTLPLTYFYKPDALFYPHAARNLALAESKYPKVGYPYPPKTSRFLVMLREPIGRTFSSWSFKVESGGGKETRPWVESVRHGLGVLASTLNCLDRETKKGSSVGLALENMCAATHFDPRSSYFHHVMKSVYSLQFEVWFKRFSKSQFHILFMEDFIRDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHTLDAPTKGTREALDLAFAPFNCRLAQQL
Sbjct:    1 AVAAATNTAIKIAPAAKAKVPNACHKNNKDTSTCVPTAYFIGASKCATTSFALAFKEHPFMRGVAWGHESEALSHGAPCPSSHMVNSVKAHMSCTSDGANVGGLEVKLSNSKRLYANGTSNDKGTLPLTYFYKPDALFYPHAARNLALAESKYPKVGYPYPPKTSRFLVMLREPIGRTFSSWSFKVESGGGKETRPWVESVRHGLGVLASTLNCLDRETKKGSSVGLALENMCAATHFDPRSSYFHHVMKSVYSLQFEVWFKRFSKSQFHILFMEDFIRDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHTLDAPTKGTREALDLAFAPFNCRLAQQL 356          
BLAST of mRNA_H-akashiwo_Contig1155.5.1 vs. uniprot
Match: A0A7S3YGB4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGB4_HETAK)

HSP 1 Score: 306 bits (783), Expect = 2.790e-97
Identity = 170/315 (53.97%), Postives = 211/315 (66.98%), Query Frame = -1
Query:    1 ALAFKEHPFMRGVA-WGHESEALSHGAPCPSSHMVNSVKAHMSCTSDGAN-VGGLEVKLSNSKRLYANGTSN-DKGTLPLTYFYKPDALFYPHAARNLALAESKYPKVGYPYPPKTSRFLVMLREPIGRTFSSWSFKVES-----GGGKETRPWVESVRHGLGVLASTLNCLD-RETKKGSSVGLALENMCAATHF-DPRSSYFHHVMKSVYSLQFEVWFKRFSKSQFHILFMEDFIRDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHTLDAPTKGTREALDLAFAPFNCRLAQQL 915
            ALAF +HPFMR +A +  E++AL+HG              ++   +DG   V  LE++   S RL+  GTSN  +GT PLTYFYKP  L++P  A NLALAE+K+P  GY    +  RFLVMLR+PI RTFSSWSFKVE+       G+E+R W E+V+  L  L+S L CLD R     +S   ALE+ CAA H  D  + Y HHVMKS+YSLQFEVWF RF K+QFHILFMEDF+RDP+ +LE TLDFFGVPM+D  +GKWGYP+R+ A KV+   KN+T  + H L APT+ T E LD  FAPFNC LAQQL
Sbjct:    2 ALAFFKHPFMRSIAPYNEETDALTHG--------------NIKVGNDGDYYVTKLEIRQDRSSRLFTTGTSNGQRGTFPLTYFYKPHTLYFPKGAINLALAEAKFPDHGYTNWQEVRRFLVMLRDPISRTFSSWSFKVETTTKLGAKGRESRAWPEAVQDELSTLSSVLTCLDERIVGSNTSTASALEDACAAPHLNDQHNQYLHHVMKSIYSLQFEVWFNRFPKTQFHILFMEDFMRDPLGSLETTLDFFGVPMLDGDEGKWGYPTRQAAMKVLGKEKNKTPQEIHKLRAPTEETHEVLDKTFAPFNCYLAQQL 302          
BLAST of mRNA_H-akashiwo_Contig1155.5.1 vs. uniprot
Match: A0A7S3XPB6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPB6_HETAK)

HSP 1 Score: 288 bits (736), Expect = 3.200e-88
Identity = 162/327 (49.54%), Postives = 204/327 (62.39%), Query Frame = -1
Query:    1 TCVPTAYFIGASKCATTSFALAFKEHPFMRGVAWGHESEALSHGAPCPSSHMVNSVKAHMSCTSDGANVGGLEVKLSNSKRLYANGTSNDKGTLPLTYFYKPDALFYPHAARNLALAESKYPKVGYPYPPKTSRFLVMLREPIGRTFSSWSFKVESGGGKETRPWVESVRHGLGVLASTLNCLDRETKKGSSVGLAL-ENMCAATHFDPRSSYFHHVMKSVYSLQFEVWFKRFSKSQFHILFMEDFIRDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHT--LDAPTKGTREALDLAFAPFNCRLAQQL 972
            TC PT YFIG SK ATTS ++AF +HPFM G+A G+E  AL +G P   S    S        ++ A  G    KL   +       +N    +PL Y YKP+ ++YP AA+N+  +E ++ + GYPY P+  RFLVMLREP+ RTFSSW+FK     GKETRPW  +V  GL  LASTL+CL + +   SS  + L E+ C+  HFDPR    HHVMKSVYSLQFE+WF  F  + FH+LFMEDFI  PV  LE TL F G+ M+DE +G  GY + + A K V TV NQTK KK+   L  PT+ T + L + F PFNCRLAQQL
Sbjct:  117 TCKPTMYFIGVSKSATTSLSVAFIQHPFMHGLAHGNECAALLYGVPRGLSSRWQSCSTGKCEFTEKA--GTKYAKLLVEQDWMGGNATN----MPLIYLYKPNTMYYPLAAKNVFESERQFQRAGYPYQPEGPRFLVMLREPVSRTFSSWAFKWSMDTGKETRPWESAVYGGLATLASTLDCLYKGSHDWSSTDIRLLESECSTNHFDPRLFTLHHVMKSVYSLQFELWFSYFPSTSFHVLFMEDFIDKPVRALETTLAFLGLSMLDENEGVRGYKTLEEAIKAVTTVLNQTKDKKNPPKLTHPTEDTVKQLSMVFEPFNCRLAQQL 437          
BLAST of mRNA_H-akashiwo_Contig1155.5.1 vs. uniprot
Match: A0A7S3XM09_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM09_HETAK)

HSP 1 Score: 111 bits (278), Expect = 1.220e-25
Identity = 52/78 (66.67%), Postives = 65/78 (83.33%), Query Frame = -1
Query:    1 RDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHTLDAPTKGTREALDLAFAPFNCRLAQQL 234
            R  V + E TL+F G+PM+DE +GKWGYP+R+  EKV+R+VKN+T+ KKHTL APT+ T+E LDLAFAPFNCRLAQQL
Sbjct:    3 RRSVGSFEATLNFLGLPMLDEDEGKWGYPTREKVEKVLRSVKNKTRDKKHTLTAPTEETQEVLDLAFAPFNCRLAQQL 80          
BLAST of mRNA_H-akashiwo_Contig1155.5.1 vs. uniprot
Match: A0A8J2SXJ9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXJ9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.230e-15
Identity = 88/327 (26.91%), Postives = 125/327 (38.23%), Query Frame = -1
Query:    1 PTAYFIGASKCATTSFALAFKEHPFMRGVAWGHESEALSHGAPCPSSHMVNSVKAHMSCTSDGANVGGLEVKLSNSKRLYANGTSNDKGTLPLTYFYKPDALFYPHAARNLALAESKYPKVGYPYPPKTSRFLVMLREPIGRTFSSWSFKVESGGGKETRPWVESVRHGLGVLASTLNCL------DRETKKGSSVGLALENMCAATHFDPRSSYFHHVMKSVYSLQFEVWFKRFSKSQFHILFMEDFIRDPVENLEVTLDFFGVPMVDEGKGKWGYPSRKVAEKVVRTVKNQTKGKKHTLDAPTKGTREALDLAFAPFNCRLAQQL 963
            PT +FIG+SKCAT+S A A   HP +   A G   +  +H         V + KA +                   +RL A    N K     +  Y P+ LF    A ++        ++         RFLV LREP+ R  SSW FK  +GGG ETR +   V  G  +      CL      DR   +   +   L       H   +     HV K +Y  Q   WF R  + +F ++ +E F  +  + L   L F GVP +    G  G+ S    +       N  +         T   +E L   +A  NC L + L
Sbjct:   22 PTFFFIGSSKCATSSIAAALARHPAITSHA-GQGGQGEAHVFDGDHRAHVKNAKALL-------------------RRLQAKLRKNPKPGALASMEYTPEYLF---EANHVPACLCGALQLTAAARCANRRFLVTLREPVARAVSSWQFKSRAGGG-ETRSFRRVVEEGAALARGMRACLRAHGGGDRAAVRACPIDRYLT---PPPHGHHQQISLSHVGKGLYVYQLRAWFARVPRERFLVVPIEQFYANATDGLARVLAFVGVPAL----GARGFASAHALKAAAEIHVNDARPSLALRAQVTDALKEQLAAVYAEPNCELDRLL 317          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1155.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3UWV5_HETAK2.970e-260100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3YGB4_HETAK2.790e-9753.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XPB6_HETAK3.200e-8849.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XM09_HETAK1.220e-2566.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J2SXJ9_9STRA9.230e-1526.91Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1155contigH-akashiwo_Contig1155:130292..131674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1385
Hectar predicted targeting categoryother localisation
Exons1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.0807347-CDS-H-akashiwo_Contig1155:130291..1310351681387100.0807347-CDS-H-akashiwo_Contig1155:130291..131035Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1155 130292..131035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.0894697-UTR-H-akashiwo_Contig1155:131035..1316741681387100.0894697-UTR-H-akashiwo_Contig1155:131035..131674Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1155 131036..131674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1155.5.1prot_H-akashiwo_Contig1155.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1155 130292..131035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1155.5.1

>prot_H-akashiwo_Contig1155.5.1 ID=prot_H-akashiwo_Contig1155.5.1|Name=mRNA_H-akashiwo_Contig1155.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=248bp
QLLGQPAVEGGKGQVQGFPGPLGRRVQRVLLPLGLVLHRAHHLLGHFPRG
VPPLPLAFVHHGHAEEVKRDLQILHWVPDEVFHEEDVELALGEALEPDLE
LQRVDAFHHVVEVRAPGIKVRRRAHVLQRQAHGAALLGLAVEAVERGGQH
AEPVPDALHPGPGLLPAAALHLEGPAGEGPADGLAEHDQEAAGLGGVRVP
HLGVLALGQGQVARRVRVEERVRLVEVGQGEGAFVIRGTVGVQALGV*
back to top

mRNA from alignment at H-akashiwo_Contig1155:130292..131674+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1155.5.1 ID=mRNA_H-akashiwo_Contig1155.5.1|Name=mRNA_H-akashiwo_Contig1155.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1383bp|location=Sequence derived from alignment at H-akashiwo_Contig1155:130292..131674+ (Heterosigma akashiwo CCMP452)
CAGCTGCTGGGCCAGCCGGCAGTTGAAGGGGGCAAAGGCCAGGTCCAGGG CTTCCCGGGTCCCCTTGGTCGGCGCGTCCAGCGTGTGCTTCTTCCCCTTG GTCTGGTTCTTCACCGTGCGCACCACCTTCTCGGCCACTTTCCGAGAGGG GTACCCCCACTTCCCCTTGCCTTCGTCCACCATGGGCACGCCGAAGAAGT CAAGCGTGACCTCCAGATTCTCCACTGGGTCCCTGATGAAGTCTTCCATG AAGAGGATGTGGAATTGGCTCTTGGAGAAGCGCTTGAACCAGACCTCGAA CTGCAGCGAGTAGACGCTTTTCATCACGTGGTGGAAGTACGAGCTCCGGG GATCAAAGTGCGTCGCCGCGCACATGTTCTCCAGCGCCAGGCCCACGGAG CTGCCCTTCTTGGTCTCGCGGTCGAGGCAGTTGAGCGTGGAGGCCAGCAC GCCGAGCCCGTGCCTGACGCTCTCCACCCAGGGCCGGGTCTCCTTCCCGC CGCCGCTCTCCACCTTGAAGGACCAGCTGGAGAAGGTCCGGCCGATGGGC TCGCGGAGCATGACCAGGAAGCGGCTGGTCTTGGGGGGGTACGGGTACCC CACCTTGGGGTACTTGCTCTCGGCCAGGGCCAAGTTGCGCGCCGCGTGCG GGTAGAAGAGCGCGTCCGGCTTGTAGAAGTAGGTCAGGGGGAGGGTGCCT TTGTCATTCGAGGTACCGTTGGCGTACAGGCGCTTGGAGTTTGAGAGCTT CACTTCGAGGCCGCCCACATTTGCCCCGTCGCTGGTGCAGCTCATGTGGG CCTTCACGCTGTTTACCATGTGGCTGCTGGGGCAGGGCGCGCCGTGGGAT AGTGCCTCGGATTCGTGCCCCCAGGCCACACCTCTCATAAAGGGGTGCTC CTTGAAAGCCAGAGCAAACGATGTTGTCGCACATTTGGAAGCCCCAATGA AGTAGGCTGTCGGGACACATGTGGAAGTGTCTTTGTTATTTTTGTGGCAT GCGTTGGGCACTTTAGCTTTCGCGGCGGGTGCAATTTTGATTGCTGTGTT GGTTGCAGCAGCCACAGCAGTAGGAGGAACTGTTGGGGCTATTTCTGCAC CTACCATCCCATCGTCATTCCCCCCGTTGGTATATATCCGTTCCTGTACC ATTTCGACACCCCCAGCCATCGCAGAACCATCCGTACTCCCCTTATTACT CGTCTCGTTCACTAATGAGTCCATTATGCGGCCAGGAACGGCATAATCAG GCGCCGTCCACTCATCCTCGGCGGTGCCATCCAGGGTTGGCGTGGATTTG TCAACAGAGAGCGCGGAAAAAGCAACCCAGGCACCCAACAGGCAAACGCT CATGACCAATAGACCGTACAAGGTCTTTCTACC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1155:130292..131674+

>mRNA_H-akashiwo_Contig1155.5.1 ID=mRNA_H-akashiwo_Contig1155.5.1|Name=mRNA_H-akashiwo_Contig1155.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=744bp|location=Sequence derived from alignment at H-akashiwo_Contig1155:130292..131674+ (Heterosigma akashiwo CCMP452)
CAGCTGCTGGGCCAGCCGGCAGTTGAAGGGGGCAAAGGCCAGGTCCAGGG
CTTCCCGGGTCCCCTTGGTCGGCGCGTCCAGCGTGTGCTTCTTCCCCTTG
GTCTGGTTCTTCACCGTGCGCACCACCTTCTCGGCCACTTTCCGAGAGGG
GTACCCCCACTTCCCCTTGCCTTCGTCCACCATGGGCACGCCGAAGAAGT
CAAGCGTGACCTCCAGATTCTCCACTGGGTCCCTGATGAAGTCTTCCATG
AAGAGGATGTGGAATTGGCTCTTGGAGAAGCGCTTGAACCAGACCTCGAA
CTGCAGCGAGTAGACGCTTTTCATCACGTGGTGGAAGTACGAGCTCCGGG
GATCAAAGTGCGTCGCCGCGCACATGTTCTCCAGCGCCAGGCCCACGGAG
CTGCCCTTCTTGGTCTCGCGGTCGAGGCAGTTGAGCGTGGAGGCCAGCAC
GCCGAGCCCGTGCCTGACGCTCTCCACCCAGGGCCGGGTCTCCTTCCCGC
CGCCGCTCTCCACCTTGAAGGACCAGCTGGAGAAGGTCCGGCCGATGGGC
TCGCGGAGCATGACCAGGAAGCGGCTGGTCTTGGGGGGGTACGGGTACCC
CACCTTGGGGTACTTGCTCTCGGCCAGGGCCAAGTTGCGCGCCGCGTGCG
GGTAGAAGAGCGCGTCCGGCTTGTAGAAGTAGGTCAGGGGGAGGGTGCCT
TTGTCATTCGAGGTACCGTTGGCGTACAGGCGCTTGGAGTTTGA
back to top