mRNA_H-akashiwo_Contig1154.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1154.4.1
Unique NamemRNA_H-akashiwo_Contig1154.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1154.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1154contigH-akashiwo_Contig1154:290188..291457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size741
Hectar predicted targeting categorysignal anchor
Exons4
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387099.7411444-CDS-H-akashiwo_Contig1154:290187..2902161681387099.7411444-CDS-H-akashiwo_Contig1154:290187..290216Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1154 290188..290216 +
1681387099.750761-CDS-H-akashiwo_Contig1154:290340..2904171681387099.750761-CDS-H-akashiwo_Contig1154:290340..290417Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1154 290341..290417 +
1681387099.7602088-CDS-H-akashiwo_Contig1154:290648..2908031681387099.7602088-CDS-H-akashiwo_Contig1154:290648..290803Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1154 290649..290803 +
1681387099.76944-CDS-H-akashiwo_Contig1154:290979..2911171681387099.76944-CDS-H-akashiwo_Contig1154:290979..291117Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1154 290980..291117 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387099.778921-UTR-H-akashiwo_Contig1154:291117..2914571681387099.778921-UTR-H-akashiwo_Contig1154:291117..291457Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1154 291118..291457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1154.4.1prot_H-akashiwo_Contig1154.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1154 290188..291117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1154.4.1

>prot_H-akashiwo_Contig1154.4.1 ID=prot_H-akashiwo_Contig1154.4.1|Name=mRNA_H-akashiwo_Contig1154.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=133bp
WGGPGPLVWGPPPPGGGPAGPFALFFPIFIFTLIFVGLAVTTYYTWDDEC
SGNQFDCQNEQTDIALTIFAIFLALVFVYFACAAMCQRRPTKGTAEEATP
FVRATNDVEAQPSAPQVPVPVVEATPVAYQKS*
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mRNA from alignment at H-akashiwo_Contig1154:290188..291457+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1154.4.1 ID=mRNA_H-akashiwo_Contig1154.4.1|Name=mRNA_H-akashiwo_Contig1154.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1270bp|location=Sequence derived from alignment at H-akashiwo_Contig1154:290188..291457+ (Heterosigma akashiwo CCMP452)
TGGGGCGGGCCTGGCCCTTTGGTCTGGGGGTAAGTTCTGGAGAATGGTGG
TGTGGTGTTGAGCTTCGCTTGAATGCCCAGTGTTTCCATTTTTACTGCGG
CTTTTGTCATTTGGTCTACTTGATGTGAACGAACTTTATCTTCTCTTGAA
CAGGCCACCACCTCCTGGAGGGGGTCCTGCGGGTCCATTTGCACTATTTT
TCCCGATATTCATCTTCACTCTCATTTTTGGTGAGCAAGTAAAGGATTTG
ATGTATGATGTGTTCGCGTTGCTTGGAAATATCTGTTGGTGCACTGAGCT
TGTTGAGCTTGCATTAGAAATGTTACAAAAAAGTCACATGCATGAATGAA
TATACCATACCTTTGAGGAACTTGTGCCATGACATTCACTGCTGAAAAAG
AAAATGAAGAGAAAATAAATTCTAATTATGCATTATTCCTCTGCACTTCA
TGCCTCACCAGTTGGTCTGGCTGTCACAACATACTACACTTGGGATGATG
AGTGCTCAGGCAACCAATTCGATTGCCAGAACGAACAAACAGATATTGCC
TTGACAATTTTTGCCATTTTTCTGGCACTTGTTTTCGTTTACTTTGCCTG
CGCAGCAATGTGTCAGGTATCATACATATCCATTTGTTTCTCTCCCATTT
TGTTCTTCACAGCCCGTTTTGTGCTCCACAGTCAATCCAGAGTGGGGAAA
ATAACTTGTGCATCCCCTTGAGCCTGGAAGCTGTGCCCACCCAAATAGAA
CCACTGATTGTATCCCCTTCTGTCTCAATGCCTTGCCTGCAGCGACGACC
AACCAAAGGAACTGCCGAGGAGGCTACGCCCTTTGTTAGGGCAACAAACG
ATGTGGAGGCACAGCCTTCAGCACCGCAGGTGCCTGTCCCTGTGGTTGAG
GCCACGCCGGTTGCCTACCAAAAGAGTTGAAGAAGTAGAAAGGAGATGCA
AGGATGCCAAACTGATGACTTATAACAACTTTACTGTGCCTTTGACTCGC
TTTTCAAAGCTTTTGGCTTTCCAAAGCTCAAGCGTATCTACTGTTTGAAA
TTGTAGAAAGGCCCTGAAAAAATACAACAACTAAGAATCTTCTATAGTCG
TTGTTGTCGCAATCTTTTTGGGGTAATCTTTTTGGGGATGGGTACTGTTT
TTACTCACCACTCATGCTACAAGCATTCAGATTGGAGAATAGCCTCCAAC
CAGGAGAAGAGAAAAAGAAAGGGGCATGGCGTGAATGGTTTATAATTCAT
ACTTTTATTGTGAAACAAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1154:290188..291457+

>mRNA_H-akashiwo_Contig1154.4.1 ID=mRNA_H-akashiwo_Contig1154.4.1|Name=mRNA_H-akashiwo_Contig1154.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=399bp|location=Sequence derived from alignment at H-akashiwo_Contig1154:290188..291457+ (Heterosigma akashiwo CCMP452)
TGGGGCGGGCCTGGCCCTTTGGTCTGGGGGCCACCACCTCCTGGAGGGGG
TCCTGCGGGTCCATTTGCACTATTTTTCCCGATATTCATCTTCACTCTCA
TTTTTGTTGGTCTGGCTGTCACAACATACTACACTTGGGATGATGAGTGC
TCAGGCAACCAATTCGATTGCCAGAACGAACAAACAGATATTGCCTTGAC
AATTTTTGCCATTTTTCTGGCACTTGTTTTCGTTTACTTTGCCTGCGCAG
CAATGTGTCAGCGACGACCAACCAAAGGAACTGCCGAGGAGGCTACGCCC
TTTGTTAGGGCAACAAACGATGTGGAGGCACAGCCTTCAGCACCGCAGGT
GCCTGTCCCTGTGGTTGAGGCCACGCCGGTTGCCTACCAAAAGAGTTGA
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