mRNA_H-akashiwo_Contig1148.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1148.5.1
Unique NamemRNA_H-akashiwo_Contig1148.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1148.5.1 vs. uniprot
Match: A0A6H5JJB5_9PHAE (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJB5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 1.040e-6
Identity = 23/48 (47.92%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   40 ARNFNLPKTENAFLNSRGQILHYRVYLPSNENQVESLIIFFHGHGAHI 183
            A +FNLPK +N F+NSR Q LH R +LP +  ++++L+ ++HG+ AHI
Sbjct:   28 ALDFNLPKGDNFFINSRKQRLHLRTFLPESGVEMKALLFWYHGYAAHI 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1148.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJB5_9PHAE1.040e-647.92Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1148contigH-akashiwo_Contig1148:109423..109948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTQ2
PFAMsHydrolase_4
Model size191
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.18e-09
EggNOG OGsCOG2267@1|root,KOG1455@2759|Eukaryota
Descriptionacylglycerol lipase activity
Cds size189
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.7854779-CDS-H-akashiwo_Contig1148:109422..1095601681387097.7854779-CDS-H-akashiwo_Contig1148:109422..109560Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1148 109423..109560 +
1681387097.8013313-CDS-H-akashiwo_Contig1148:109897..1099481681387097.8013313-CDS-H-akashiwo_Contig1148:109897..109948Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1148 109898..109948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1148.5.1prot_H-akashiwo_Contig1148.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1148 109423..109948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1148.5.1

>prot_H-akashiwo_Contig1148.5.1 ID=prot_H-akashiwo_Contig1148.5.1|Name=mRNA_H-akashiwo_Contig1148.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
MAGESESGLGPDDARNFNLPKTENAFLNSRGQILHYRVYLPSNENQVESL
IIFFHGHGAHINS
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mRNA from alignment at H-akashiwo_Contig1148:109423..109948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1148.5.1 ID=mRNA_H-akashiwo_Contig1148.5.1|Name=mRNA_H-akashiwo_Contig1148.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=526bp|location=Sequence derived from alignment at H-akashiwo_Contig1148:109423..109948+ (Heterosigma akashiwo CCMP452)
ATGGCGGGTGAGAGTGAGAGTGGCTTAGGCCCAGATGATGCCCGCAATTT
CAACCTCCCCAAGACAGAAAATGCCTTTTTAAATTCAAGAGGCCAGATAT
TACACTACCGTGTCTACCTGCCAAGCAACGAAAATCAGGTGCAAAACCAA
AATATAATCATTGTATATGAACATGTACAACAACGAAAATGTCAGCCACT
AATAACGAGTACATTGTGAGAGTATGTGGACATCGAAATTCTTTAGTTGT
ACTGGTGAAGTTTCATGTATTGTGCCTATTGCCGTGTCTGAACGGAGTCT
TTTTTAAAACTGGCTATAGAAAGAAATTTGAAACTCACGCCCAAATCTTC
AGAGAAAGAATATTTTGAATATTTCCAATGCTGGGGCTGAATTCACTGCA
TGATCATCATCTTAGGTGTACTGTCATTTCCCAGTAGGGACTAGTAAAAC
ATTAAACTTCTCTCACATGTGGCAGGTGGAATCTCTCATTATTTTCTTCC
ATGGTCATGGAGCCCACATCAACAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1148:109423..109948+

>mRNA_H-akashiwo_Contig1148.5.1 ID=mRNA_H-akashiwo_Contig1148.5.1|Name=mRNA_H-akashiwo_Contig1148.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig1148:109423..109948+ (Heterosigma akashiwo CCMP452)
ATGGCGGGTGAGAGTGAGAGTGGCTTAGGCCCAGATGATGCCCGCAATTT
CAACCTCCCCAAGACAGAAAATGCCTTTTTAAATTCAAGAGGCCAGATAT
TACACTACCGTGTCTACCTGCCAAGCAACGAAAATCAGGTGGAATCTCTC
ATTATTTTCTTCCATGGTCATGGAGCCCACATCAACAGC
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