mRNA_H-akashiwo_Contig1148.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1148.1.1
Unique NamemRNA_H-akashiwo_Contig1148.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1148.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1148contigH-akashiwo_Contig1148:67581..67972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size151
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.5529592-CDS-H-akashiwo_Contig1148:67580..676191681387097.5529592-CDS-H-akashiwo_Contig1148:67580..67619Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1148 67581..67619 -
1681387097.5610693-CDS-H-akashiwo_Contig1148:67862..679581681387097.5610693-CDS-H-akashiwo_Contig1148:67862..67958Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1148 67863..67958 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387097.5690691-UTR-H-akashiwo_Contig1148:67958..679721681387097.5690691-UTR-H-akashiwo_Contig1148:67958..67972Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1148 67959..67972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1148.1.1prot_H-akashiwo_Contig1148.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1148 67581..67958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1148.1.1

>prot_H-akashiwo_Contig1148.1.1 ID=prot_H-akashiwo_Contig1148.1.1|Name=mRNA_H-akashiwo_Contig1148.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=45bp
MVPNYEGAVDNYITLLEQIYERDLNVTPDTMPILLTEPPQQNQDT
back to top

mRNA from alignment at H-akashiwo_Contig1148:67581..67972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1148.1.1 ID=mRNA_H-akashiwo_Contig1148.1.1|Name=mRNA_H-akashiwo_Contig1148.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=392bp|location=Sequence derived from alignment at H-akashiwo_Contig1148:67581..67972- (Heterosigma akashiwo CCMP452)
TTGTGCAGAGAGGCATGGTTCCCAACTATGAAGGGGCAGTAGACAATTAC
ATCACATTGCTAGAACAAATATACGAAAGGGATCTCAATGTCACTCCAGA
TACAATGCCGGTAAGCTTCTTCTAAAAAAAAAAAAAAGTGATAACTAGAC
CACCAGAATCAAATACTACTCTTGTAGACATAATATATATTGAATAATTT
ATAATAAATAAATACTACTTATTAATTTTTATTTTTTAGGTGCACTTGCA
CAAATCATTCCCCATCATGCAAACATGTATATTAGTACACTAGTATATAT
TTTTTTAATGCTTATGATACTAAAACGCCATAGAAAAAATATGATTTGTA
TAGATCCTATTGACAGAGCCACCTCAGCAGAATCAAGATACT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1148:67581..67972-

>mRNA_H-akashiwo_Contig1148.1.1 ID=mRNA_H-akashiwo_Contig1148.1.1|Name=mRNA_H-akashiwo_Contig1148.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=135bp|location=Sequence derived from alignment at H-akashiwo_Contig1148:67581..67972- (Heterosigma akashiwo CCMP452)
ATGGTTCCCAACTATGAAGGGGCAGTAGACAATTACATCACATTGCTAGA
ACAAATATACGAAAGGGATCTCAATGTCACTCCAGATACAATGCCGATCC
TATTGACAGAGCCACCTCAGCAGAATCAAGATACT
back to top