mRNA_H-akashiwo_Contig1140.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1140.5.1
Unique NamemRNA_H-akashiwo_Contig1140.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1140.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1140contigH-akashiwo_Contig1140:336929..337249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size183
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.4070802-CDS-H-akashiwo_Contig1140:336928..3370261681387095.4070802-CDS-H-akashiwo_Contig1140:336928..337026Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1140 336929..337026 +
1681387095.4185166-CDS-H-akashiwo_Contig1140:337164..3372491681387095.4185166-CDS-H-akashiwo_Contig1140:337164..337249Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1140 337165..337249 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1140.5.1prot_H-akashiwo_Contig1140.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1140 336929..337249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1140.5.1

>prot_H-akashiwo_Contig1140.5.1 ID=prot_H-akashiwo_Contig1140.5.1|Name=mRNA_H-akashiwo_Contig1140.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
ILWEKATAKYEPNHEVSRCLCYDQRGNEPIDLSSSSSLRDLNISHGDMLY
IVEKELEPEPE
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mRNA from alignment at H-akashiwo_Contig1140:336929..337249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1140.5.1 ID=mRNA_H-akashiwo_Contig1140.5.1|Name=mRNA_H-akashiwo_Contig1140.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=321bp|location=Sequence derived from alignment at H-akashiwo_Contig1140:336929..337249+ (Heterosigma akashiwo CCMP452)
ATCCTTTGGGAAAAAGCAACGGCCAAGTATGAACCCAACCATGAAGTGTC
GAGGTGTTTGTGTTATGATCAACGAGGTAACGAGCCAATCGACTTGAGGT
GAGTTTTGTCAATGATGGTGGCCTCGCTGAACCCATGTACATGAGTATAA
GTTCTGATTGGAGGAGGAATGTTAACACCTTGTTTACTTTACTTTTCCAA
TCTGGTGTTTGCACTAATCCATGCACCTTGGTTCAGCTCATCCAGCTCTC
TCAGGGACCTCAATATATCTCATGGCGACATGCTGTACATTGTTGAGAAA
GAATTGGAGCCTGAGCCTGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1140:336929..337249+

>mRNA_H-akashiwo_Contig1140.5.1 ID=mRNA_H-akashiwo_Contig1140.5.1|Name=mRNA_H-akashiwo_Contig1140.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig1140:336929..337249+ (Heterosigma akashiwo CCMP452)
ATCCTTTGGGAAAAAGCAACGGCCAAGTATGAACCCAACCATGAAGTGTC
GAGGTGTTTGTGTTATGATCAACGAGGTAACGAGCCAATCGACTTGAGCT
CATCCAGCTCTCTCAGGGACCTCAATATATCTCATGGCGACATGCTGTAC
ATTGTTGAGAAAGAATTGGAGCCTGAGCCTGAA
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