mRNA_H-akashiwo_Contig1133.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1133.5.1
Unique NamemRNA_H-akashiwo_Contig1133.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A7S3Y8F0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8F0_HETAK)

HSP 1 Score: 142 bits (359), Expect = 1.120e-38
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWGVCLLNYCLPTL 192
            QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWGVCLLNYCLPTL
Sbjct:   94 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWGVCLLNYCLPTL 157          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A7S3XNA8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNA8_HETAK)

HSP 1 Score: 126 bits (317), Expect = 1.310e-34
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWGVCLLNYCLPTL 192
            QF+ FLA EGTVAQYTSPYTPEHNGVAER NRAA++MCRT MLQSGAD+RWWGVCLLNYCLPTL
Sbjct:   86 QFKDFLAREGTVAQYTSPYTPEHNGVAERANRAAFEMCRTAMLQSGADSRWWGVCLLNYCLPTL 149          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A7S4DDH6_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDH6_HETAK)

HSP 1 Score: 108 bits (271), Expect = 3.490e-26
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWGVCLLNYCLPTL 192
            +F  FLA EGT   +TS YTPEHNGVAERTNR  WDMCRTVMLQ+GAD RWWG CL++Y LPTL
Sbjct:  671 EFMAFLAAEGTRPNFTSAYTPEHNGVAERTNRVVWDMCRTVMLQAGADPRWWGTCLIHYVLPTL 734          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A182G3I8_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3I8_AEDAL)

HSP 1 Score: 64.7 bits (156), Expect = 7.710e-11
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWG 159
            +  RF A++G  AQYT+ YTP+ NGVAER NR+  +M  T++L +G D R+WG
Sbjct:  161 ELHRFFADQGIRAQYTTAYTPQQNGVAERKNRSLQEMATTMLLDAGLDKRYWG 213          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A5E4MPX9_9HEMI (Integrase, catalytic core,Ribonuclease H-like domain n=1 Tax=Cinara cedri TaxID=506608 RepID=A0A5E4MPX9_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 2.880e-9
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    4 FRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWG--VCLLNYCLPTL 192
            F+ F A++G V  YT+PYTPE NG+AERTNR   +  R+++ QSG     W     ++ Y L  L
Sbjct:   61 FKNFCAQKGIVVNYTAPYTPEQNGLAERTNRTIIESTRSLLFQSGLSKEMWSEAALMVTYLLNRL 125          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 60.8 bits (146), Expect = 2.930e-9
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWGVCLLN 174
            + +RFL  EG V Q+++PY+P+ NGVAER NR   +M   ++L+ G D ++WG  +L 
Sbjct:   95 ELQRFLRSEGIVCQFSAPYSPQQNGVAERRNRYLKEMTMCLLLEGGLDEKYWGEAVLT 152          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A2Z6PD07_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PD07_TRISU)

HSP 1 Score: 60.8 bits (146), Expect = 2.940e-9
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWG--VCLLN 174
            +F  +  ++G + + T+PYTP+HNG+AER NR+  DM R+++ Q G   R+WG  V +LN
Sbjct:  541 EFENYCKDQGIIHEVTAPYTPQHNGLAERRNRSILDMARSMVKQKGLQHRFWGEAVYILN 600          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A392MC19_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MC19_9FABA)

HSP 1 Score: 60.5 bits (145), Expect = 3.650e-9
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWG------VCLLNYCLPT 189
            +F  F   EG + + T+PYTP+HNG+AER NR   DM R+++ Q     ++WG      V +LN C PT
Sbjct:   85 EFEAFCVNEGIIHEVTAPYTPQHNGLAERRNRTILDMARSMLKQKNMPPKFWGEAVSAAVYILNKC-PT 152          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A2N5U631_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5U631_9BASI)

HSP 1 Score: 60.1 bits (144), Expect = 5.480e-9
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = 1
Query:   16 LAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWG-----VCLLNYCLPTL 192
            LA+EG       PYTP+HNGVAER NR   DM R ++L +     WWG       +   CLP+L
Sbjct:  723 LAKEGIQHNIAPPYTPQHNGVAERANRTIIDMTRCILLHAKMSAEWWGDAVVAAAMTTNCLPSL 786          
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Match: A0A2Z6MLX9_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MLX9_TRISU)

HSP 1 Score: 60.1 bits (144), Expect = 5.480e-9
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTRWWG 159
            +F  +  ++G + + T+PYTP+HNG+AER NR+  DM R+++ Q G   R+WG
Sbjct:  398 EFENYCKDQGIIHEVTTPYTPQHNGLAERRNRSILDMARSMVKQKGLPHRFWG 450          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1133.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8F0_HETAK1.120e-38100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XNA8_HETAK1.310e-3487.50Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDH6_HETAK3.490e-2673.44Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A182G3I8_AEDAL7.710e-1150.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E4MPX9_9HEMI2.880e-943.08Integrase, catalytic core,Ribonuclease H-like doma... [more]
A0A182HAC3_AEDAL2.930e-943.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z6PD07_TRISU2.940e-943.33Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A392MC19_9FABA3.650e-942.03Retrovirus-related pol polyprotein from transposon... [more]
A0A2N5U631_9BASI5.480e-943.75Integrase catalytic domain-containing protein n=1 ... [more]
A0A2Z6MLX9_TRISU5.480e-943.40Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1133contigH-akashiwo_Contig1133:296522..296714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4113.PGSC0003DMT400095085
PFAMsRetrotran_gag_2,rve
Model size195
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.19e-09
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YIU@33090|Viridiplantae,3GNSS@35493|Streptophyta,44TRJ@71274|asterids
DescriptionIntegrase core domain
Cds size192
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.834624-CDS-H-akashiwo_Contig1133:296521..2967131681387092.834624-CDS-H-akashiwo_Contig1133:296521..296713Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1133 296522..296713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1133.5.1prot_H-akashiwo_Contig1133.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1133 296522..296713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1133.5.1

>prot_H-akashiwo_Contig1133.5.1 ID=prot_H-akashiwo_Contig1133.5.1|Name=mRNA_H-akashiwo_Contig1133.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
QFRRFLAEEGTVAQYTSPYTPEHNGVAERTNRAAWDMCRTVMLQSGADTR
WWGVCLLNYCLPTL
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mRNA from alignment at H-akashiwo_Contig1133:296522..296714+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1133.5.1 ID=mRNA_H-akashiwo_Contig1133.5.1|Name=mRNA_H-akashiwo_Contig1133.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=193bp|location=Sequence derived from alignment at H-akashiwo_Contig1133:296522..296714+ (Heterosigma akashiwo CCMP452)
CAGTTTCGGCGTTTTCTCGCTGAGGAGGGCACTGTTGCCCAATACACCTC GCCCTATACGCCGGAGCATAATGGTGTTGCTGAGCGGACCAATCGGGCTG CTTGGGACATGTGTAGGACGGTTATGCTTCAGTCCGGAGCTGATACTAGG TGGTGGGGTGTCTGCCTTCTTAACTATTGCCTGCCAACTCTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1133:296522..296714+

>mRNA_H-akashiwo_Contig1133.5.1 ID=mRNA_H-akashiwo_Contig1133.5.1|Name=mRNA_H-akashiwo_Contig1133.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig1133:296522..296714+ (Heterosigma akashiwo CCMP452)
CAGTTTCGGCGTTTTCTCGCTGAGGAGGGCACTGTTGCCCAATACACCTC
GCCCTATACGCCGGAGCATAATGGTGTTGCTGAGCGGACCAATCGGGCTG
CTTGGGACATGTGTAGGACGGTTATGCTTCAGTCCGGAGCTGATACTAGG
TGGTGGGGTGTCTGCCTTCTTAACTATTGCCTGCCAACTCTG
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