mRNA_H-akashiwo_Contig1133.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1133.1.1
Unique NamemRNA_H-akashiwo_Contig1133.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A7S2XQV2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQV2_9STRA)

HSP 1 Score: 238 bits (608), Expect = 2.740e-73
Identity = 134/281 (47.69%), Postives = 168/281 (59.79%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEERGQNVIVKHWPGTDVQGDAYVDCAR--VNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHVKSFVNIQDLPFNQSGFGIQPH-FPWLLKPGTQQKDTNGATFHGPFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRG----SINPAAMKYILCNATVP--------QNDKVY---DPSAWDFLKDNVPEYAFFEEL 789
            +CSI  ++EAYIDEWVDY+ A+GF   ++YDNS+  EM+QWG E+G  V V H+PG   Q  AY DC +       G   W AF D DEFLV+KKH +V +FL+ HC +GA++VNWF FG + R VY PLPVT RF+YR P VNQHVKS V + DL  N       PH  P  LK G+Q  D+NG  F GPFNP GP DV  +HH+ TKS KE+ +K  +RG    S     M   L  A V         +ND  Y   D +AW  +K NV   A F+E+
Sbjct:   63 MCSIVKNEEAYIDEWVDYHHALGFDLFYIYDNSDGFEMKQWGNEKGDYVRVIHFPGVSKQMLAYNDCGKRLQEGGNGHHTWAAFFDVDEFLVIKKHEHVSDFLEDHCVNGAITVNWFFFGESSRIVYTPLPVTKRFIYREPSVNQHVKSIVRLTDL--NMEIHIKNPHHIP--LKSGSQH-DSNGMNFIGPFNPNGPIDVVALHHFHTKSYKEYIHKR-LRGRATMSWEKGDMDASLKRAKVAFEKALAGEENDGTYTFFDETAWTLMKKNVLYMALFDEI 337          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A7S1D0L1_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0L1_CYCTE)

HSP 1 Score: 214 bits (545), Expect = 1.630e-64
Identity = 110/219 (50.23%), Postives = 143/219 (65.30%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEERGQNVIVKHWPGTDVQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYR-----HPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFHGPFNPGGPTDVAVIHHYWTKSMKEFSYK 642
            +C IA D+E YIDEWVDY+LA+GF++I VYDN++  E+ QWGEE+G  V V  + G   Q +AY+DCA     +   +W AF D DEFL+L +H ++  FL+++ + GAL +NW +FG  GR VY P PVT RF +R     HP  N+HVKS  N++D+  N +   I+ H+P  L  G  Q DTNG TF G FN  GPTDVAVIHHY  KS KEF  K
Sbjct:   69 LCCIAKDEEPYIDEWVDYHLALGFNKIIVYDNADLGELLQWGEEKGPLVEVVPFAGVAKQKEAYLDCATKLISQHEFKWAAFFDVDEFLILNQHNHIGAFLEKYLKEGALGINWRVFGTGGRSVYSPAPVTKRFQFRFEDGYHP--NRHVKSIANLRDINLNAT-VPIRCHYP-ELNAGKSQFDTNGHTFVGAFNNNGPTDVAVIHHYHRKSAKEFLKK 283          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A7S3LGE3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGE3_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.240e-57
Identity = 108/269 (40.15%), Postives = 150/269 (55.76%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEERGQNVIVKHWPGTDVQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFHGPFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRG------SINPAAMKYILCNATVPQNDKVYDPSAWDFLKDNVPEYAFFEEL 789
            +C I  ++E YIDE+VDY+ A+GF   ++YDNS+   +RQWG E+G +V V  +PG   Q  A+  C+ + A      W+AF DTDE LVLKKH NV  FL++HC SGAL +NW +FG   R  Y P P T RF +R       +K+   + D+  +Q    I  H+P+L KPG  Q DTNG  F GP NP  P D AV+HHY  KS +E+  KS VRG             +       +    + +D +AW  +K+ VP Y  ++ +
Sbjct:  108 MCMIVKEEEPYIDEFVDYHHALGFDAFYIYDNSDNYVLRQWGYEKGCHVTVVPFPGVAQQWTAFHTCSTM-ALHNNHTWVAFFDTDEILVLKKHRNVHSFLEEHCSSGALGINWLVFGTAERLAYSPQPFTKRFRFRKRKPEPMIKTIARLSDIDLSQGTLKI--HYPFL-KPGFSQHDTNGRNFSGPSNPFTPIDQAVLHHYKYKSYQEYVEKS-VRGRATYDREAGKVEQQVEQARRGMVPAARWFDDTAWMKMKEYVPRYVAYDVI 371          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: K0TAV6_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAV6_THAOC)

HSP 1 Score: 192 bits (488), Expect = 9.460e-56
Identity = 109/272 (40.07%), Postives = 156/272 (57.35%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEER---GQNVIVKHWPGTDVQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHV--KSFVNIQDLPFNQSGFGIQPHFPWLLKP--GTQQKDTNGATFH--GPFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRGSINPAAMKYILCNATVPQNDKVYDPSAWDFLKDNVPEYAFFEEL 789
            +C I  D E Y+DEWVDY+  +GFH I++ DNS+ +E+  W ++R   G +V V   PG+  Q   Y  CA  +  +    ++AF+D DEFLVLK+H  + + L  H + G+L+++W++FG      Y PLPVT RF +R  GV +H   K++ N++ +    S +G  P  P  +K   GT +  T G +F   G  N   PTDVAVIHHY   S KEF +KSC+R +++      +   AT  Q  +V D SAW  LK NVP YA F+E 
Sbjct:   51 LCGIVKDSEPYLDEWVDYHFGLGFHTIYLIDNSKDHELLTWQDKRRKAGYSVRVMPKPGSHRQMYGYHMCAAEH--KDEHTYMAFMDVDEFLVLKRHETIDQMLADHLQEGSLAISWYVFGSGKTATYAPLPVTKRFTFRD-GVEKHDRHKAWANVKSI-MKTSDYGGYPQSPHSMKTKRGTWKDTTGGGSFDKIGAENYARPTDVAVIHHYKYLSPKEFQWKSCIRQTVDAKLKDCVGGKATAYQG-RVPDDSAWQLLKKNVPRYAMFDEF 317          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A7S1UMS1_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMS1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.310e-54
Identity = 107/271 (39.48%), Postives = 155/271 (57.20%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGE---ERGQNVIVKHWPGTD---VQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHC-ESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFH--GPFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRGSINPAAMKYILCNATVPQNDKVYDPSAWDFLKDNVPEYAFFEE 786
            IC+I  D E +IDEW+DYN A+GFH I++YDN+  N+ R+WG+   E G+N+ V H+P  +    Q +AY  CA  +  +  + ++AFID DEFLVLKKH ++ E + +H  + GAL+++W  FG + +  Y  +P T RF+YR    +  VKS V  +D    QS      H  ++    T Q  T G  +   G +N   P DVAV +HY  KS KE+ YK CVR ++  A M +  C    P+    YD +AW  L+  VP+Y  F+E
Sbjct:   88 ICAIIKDSETFIDEWIDYNFAVGFHAIYIYDNTPRNDFREWGQKQYEAGRNLQVIHFPEENNNLTQKNAYNGCA--HRFKNESDYIAFIDDDEFLVLKKHRDISELIAEHLPDGGALTISWRRFGSSNKTQYSTVPTTRRFMYRELRTHIRVKSIVKSEDFIEMQSA-----HSVFVKNNKTIQDTTGGGDYDWDGAYNRNRPDDVAVFNHYKFKSDKEWWYKECVRQTVLGAGMSWQGCGEP-PKVGVTYDDAAWKILRARVPKYRVFDE 350          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A7S1Y9V9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y9V9_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.510e-53
Identity = 107/273 (39.19%), Postives = 156/273 (57.14%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGE---ERGQNVIV-KHW--PGTDVQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHC--ESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFHG---PFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRGSINPAAMKYILCNATVPQNDKVYDPSAWDFLKDNVPEYAFFEE 786
            +C+I  D EAYIDEWVDYN AIGFH +++YDNS  N+++ WG+   E G+NV+V  H   P  D Q  AY  C  V      + ++AF+D DE+L+LKKHA+V  FL++H   E G L+VNW  FG +   +Y P+PVT R++ R    +  VK  + ++D    +S     PH  W+ KPG   +DT+G   +     +N     DVAV++HY  KS KE+ YK CVR ++         C     +   ++D +AW  L+  VP+Y  ++E
Sbjct:   81 VCAIIRDAEAYIDEWVDYNFAIGFHAMYIYDNSPNNDLKSWGQKVREEGKNVVVVPHGMAPANDTQDLAYNGC--VERFGNESDYIAFVDDDEYLLLKKHADVSAFLREHLAQEGGCLTVNWARFGTSNHSLYAPIPVTRRYMLREWKTHYRVKCIITVKDFDKMRS-----PHAVWM-KPGVPYRDTSGGGTYDHEDDWNMDRTDDVAVLNHYKWKSEKEWWYKECVRKTVLGDEKS---CGED-SREGTIFDDAAWKVLRSRVPKYRAYDE 341          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A813IJ16_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IJ16_POLGL)

HSP 1 Score: 184 bits (466), Expect = 5.300e-52
Identity = 105/269 (39.03%), Postives = 142/269 (52.79%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEER---GQNVIVKHWPGTDVQGDAYVDCARVNARRGRAR---WLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFHGPFNPGGPTDVAVIHHYWTKSMKEFSYKSCV-RGSINPAAMKYILCNATVPQNDKVYDPSAWDFLKDNVPEYAFFEE 786
            IC +A  ++ YIDEW DY  ++GF  I+VYDNSE   +  W  ER   G ++ +  + G  V   A+ DC   ++++   R   WLAF D DEFL      + +         GA+ +NW  FG +GR  YQPLPVT RF +R   VNQH KS V I        G  + PH  ++LK G  + DT G  F GPFN  GP+DVAV+HHY+ KS  E++ K    R        K      T     +V D SAW+FLK  VP+Y  +++
Sbjct:  103 ICMVARFEDIYIDEWADYQFSLGFETIYVYDNSENTSLFYWASERRKRGDDIELVPFKGVAVVTKAFDDCMYQSSKQSNLRNHSWLAFFDGDEFLATAPEGSNV---------GAVGINWLFFGTSGRDFYQPLPVTKRFQHREEDVNQHTKSIVRI-----TVGGPCMDPH-QFILKDGAVKVDTAGKHFSGPFNINGPSDVAVLHHYYWKSQAEWAQKFATPRNDNGELRQKRFPFYPTESSAGQVLDTSAWEFLKKAVPKYNIYDD 356          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A7S1D271_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D271_CYCTE)

HSP 1 Score: 176 bits (447), Expect = 1.510e-50
Identity = 90/188 (47.87%), Postives = 121/188 (64.36%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEERGQNVIVKHWPGTDVQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPG---VNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATF 555
            +C IA D+E YIDEWVDY+LA+GF++I VYDNS+  E+ QWG+E+G NV V    G   Q +AY DCA     +   +W AF D DEFL+LK+H  V   L+++ + GAL +NW +FG +GR VY P PVT RF+ R       N+HVKS +N++D+  N +   I+ H+P L   G  Q DTNG TF
Sbjct:   60 LCCIAKDEEPYIDEWVDYHLALGFNKIIVYDNSDLEELSQWGKEKGPNVEVVPLAGVAKQIEAYRDCALKLLHQNEFKWAAFFDVDEFLILKQHHYVGSLLERYLKEGALGINWRVFGTSGRLVYSPAPVTKRFLLRFKDNSVTNRHVKSIINLEDINLNAT-VPIRCHYPELYS-GKSQIDTNGHTF 245          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: A0A6C0DV42_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DV42_9ZZZZ)

HSP 1 Score: 177 bits (449), Expect = 3.410e-50
Identity = 97/256 (37.89%), Postives = 147/256 (57.42%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEERGQNVIVKHWPGTDVQGDAYVDCARVNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYRHPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFHGPFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRGSINPAAMKYI--LCNATVPQNDKVYDPSAWDFLKDNV 762
            IC IAL++E YIDEW+ Y+LA+GF+ I++YDNS    ++   +++   V V H+PG   Q +AY  C  +   + + +W AFID DEF+VLKKH+N+ EFL+ +    ++ +NW +FG +  ++Y+  PVT RF Y +  ++ H+KS   +  +        + PH+P LLK      DT+     GPFN  G  ++A IHHY+TKS +EF  K   RG  +    K +  L       ND VY+  AWDF   ++
Sbjct:   58 ICCIALNEEPYIDEWIKYHLALGFNHIYIYDNSNNYILK---DKQTDKVTVIHFPGITKQIEAYNLC--IAQYKNKHKWCAFIDCDEFIVLKKHSNINEFLKDYNSHDSIGLNWKMFGTSNEKIYRDEPVTSRFKYCNKNIDIHIKSISKLSSI-----NIYVSPHYPVLLK--GNNYDTHSNIITGPFNDKGSDEIACIHHYYTKSEEEF-LKKINRGRADITEKKSVEELTEIHFKNND-VYNSDAWDFYSKHL 299          
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Match: B8BZI7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZI7_THAPS)

HSP 1 Score: 177 bits (448), Expect = 8.600e-49
Identity = 108/298 (36.24%), Postives = 159/298 (53.36%), Query Frame = 1
Query:    1 ICSIALDDEAYIDEWVDYNLAIGFHEIHVYDNSEANEMRQWGEER---GQNVIVKHWPGTDVQGDAYVDCAR-------VNARRGRARWLAFIDTDEFLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYR--HPGVNQH-----VKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQK-------DTNGATFHGPFNPGG------PTDVAVIHHYWTKSMKEFSYKSCVRGSINPAAMKYILCNATVPQN-----DKVYDPSAWDFLKDNVPEYAFFEEL 789
            +C I  D E Y+DEW+DY+  +G H I++ DNS+ +E++ W ++R   G +V V   PG+  Q   Y  CA          A   R+ ++AF D DEFLVLK H+ +   L+ H + G+L+++W+IFG  G  +Y PLPVT+RF+YR  H   ++H     VKS V + D       +G  P  P  +K   +         DTNG    G F+  G      P D+AV+HHY   S KEF +KSC+R +++    K   C+  + +        VYD SAW  LK NVP+YA +++ 
Sbjct:  127 LCGIVKDAEPYLDEWIDYHFGLGVHTIYLIDNSKHHELKSWQDKRRAAGHSVRVLPKPGSHRQMYGYHMCAAEFKDAHSALAVSFRSTYMAFFDVDEFLVLKNHSTIDAMLKDHLQKGSLAISWYIFGSGGTSLYAPLPVTMRFLYRDGHSEADRHDVWHNVKSIVKLSD-------YGGYPKSPHSIKTNKRTAGSDKAWVDTNGK---GKFDDIGASNFDRPVDIAVLHHYKFLSPKEFYWKSCIRKTVDD---KLKDCDDKLKRGVSHFVGSVYDDSAWQTLKRNVPQYAMYDQF 411          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1133.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XQV2_9STRA2.740e-7347.69Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1D0L1_CYCTE1.630e-6450.23Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S3LGE3_9STRA1.240e-5740.15Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K0TAV6_THAOC9.460e-5640.07Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1UMS1_9STRA1.310e-5439.48Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S1Y9V9_9STRA4.510e-5339.19Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A813IJ16_POLGL5.300e-5239.03Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7S1D271_CYCTE1.510e-5047.87Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A6C0DV42_9ZZZZ3.410e-5037.89Uncharacterized protein n=1 Tax=viral metagenome T... [more]
B8BZI7_THAPS8.600e-4936.24Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1133contigH-akashiwo_Contig1133:154448..155372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0TAV6
PFAMsGlyco_tranf_2_4
Model size925
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.58e-40
EggNOG OGsCOG2802@1|root,KOG4159@2759|Eukaryota,2XFKA@2836|Bacillariophyta
DescriptionGlycosyl transferase family 2
Cds size726
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.7950718-UTR-H-akashiwo_Contig1133:154447..1545581681387092.7950718-UTR-H-akashiwo_Contig1133:154447..154558Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1133 154448..154558 +
1681387092.8109996-UTR-H-akashiwo_Contig1133:155284..1553721681387092.8109996-UTR-H-akashiwo_Contig1133:155284..155372Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1133 155285..155372 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.8034792-CDS-H-akashiwo_Contig1133:154558..1552841681387092.8034792-CDS-H-akashiwo_Contig1133:154558..155284Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1133 154559..155284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1133.1.1prot_H-akashiwo_Contig1133.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1133 154559..155284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1133.1.1

>prot_H-akashiwo_Contig1133.1.1 ID=prot_H-akashiwo_Contig1133.1.1|Name=mRNA_H-akashiwo_Contig1133.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=242bp
MRQWGEERGQNVIVKHWPGTDVQGDAYVDCARVNARRGRARWLAFIDTDE
FLVLKKHANVIEFLQQHCESGALSVNWFIFGPNGRRVYQPLPVTLRFVYR
HPGVNQHVKSFVNIQDLPFNQSGFGIQPHFPWLLKPGTQQKDTNGATFHG
PFNPGGPTDVAVIHHYWTKSMKEFSYKSCVRGSINPAAMKYILCNATVPQ
NDKVYDPSAWDFLKDNVPEYAFFEELRAGQLTSSKYHHTFQ*
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mRNA from alignment at H-akashiwo_Contig1133:154448..155372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1133.1.1 ID=mRNA_H-akashiwo_Contig1133.1.1|Name=mRNA_H-akashiwo_Contig1133.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=925bp|location=Sequence derived from alignment at H-akashiwo_Contig1133:154448..155372+ (Heterosigma akashiwo CCMP452)
ATATGCAGCATAGCGCTTGATGATGAAGCATACATAGATGAGTGGGTTGA CTACAACTTGGCGATCGGGTTTCACGAGATTCATGTATACGACAACTCTG AAGCAAACGAGATGAGGCAGTGGGGGGAAGAGCGAGGACAAAATGTGATA GTCAAGCACTGGCCCGGCACAGATGTTCAAGGGGATGCCTACGTAGATTG TGCGAGAGTCAATGCTCGTCGAGGGAGGGCTCGTTGGTTAGCGTTTATCG ATACTGACGAATTTTTGGTGCTGAAAAAACACGCGAATGTCATTGAATTT CTTCAACAGCATTGTGAATCGGGTGCCCTTTCTGTCAATTGGTTTATTTT TGGGCCAAACGGACGCAGAGTGTATCAACCATTGCCTGTAACATTAAGAT TCGTATACAGGCATCCAGGTGTAAATCAGCATGTCAAGAGCTTCGTGAAC ATCCAGGATCTTCCTTTCAACCAGTCAGGGTTTGGGATACAACCACATTT TCCGTGGTTGTTGAAGCCAGGGACGCAGCAAAAGGATACAAATGGTGCAA CTTTCCATGGTCCCTTCAACCCTGGAGGCCCCACTGATGTTGCAGTGATA CATCATTACTGGACCAAATCCATGAAAGAATTCTCGTATAAGTCATGTGT TAGAGGGTCTATTAACCCCGCTGCAATGAAATACATCCTGTGCAACGCGA CTGTTCCGCAGAATGATAAGGTCTATGACCCCTCTGCATGGGACTTTTTG AAGGATAATGTCCCTGAGTATGCCTTCTTTGAAGAGCTAAGGGCGGGTCA GCTCACATCATCAAAATATCATCATACATTTCAGTAGTATGGTGACCGGA TATCAACCAGGAGCGGCAGAAAATGGTTATATTACAAGAGTGGGGGTGCA GCTTGTGAAAAAGTGGGAGTTATGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1133:154448..155372+

>mRNA_H-akashiwo_Contig1133.1.1 ID=mRNA_H-akashiwo_Contig1133.1.1|Name=mRNA_H-akashiwo_Contig1133.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=726bp|location=Sequence derived from alignment at H-akashiwo_Contig1133:154448..155372+ (Heterosigma akashiwo CCMP452)
ATGAGGCAGTGGGGGGAAGAGCGAGGACAAAATGTGATAGTCAAGCACTG
GCCCGGCACAGATGTTCAAGGGGATGCCTACGTAGATTGTGCGAGAGTCA
ATGCTCGTCGAGGGAGGGCTCGTTGGTTAGCGTTTATCGATACTGACGAA
TTTTTGGTGCTGAAAAAACACGCGAATGTCATTGAATTTCTTCAACAGCA
TTGTGAATCGGGTGCCCTTTCTGTCAATTGGTTTATTTTTGGGCCAAACG
GACGCAGAGTGTATCAACCATTGCCTGTAACATTAAGATTCGTATACAGG
CATCCAGGTGTAAATCAGCATGTCAAGAGCTTCGTGAACATCCAGGATCT
TCCTTTCAACCAGTCAGGGTTTGGGATACAACCACATTTTCCGTGGTTGT
TGAAGCCAGGGACGCAGCAAAAGGATACAAATGGTGCAACTTTCCATGGT
CCCTTCAACCCTGGAGGCCCCACTGATGTTGCAGTGATACATCATTACTG
GACCAAATCCATGAAAGAATTCTCGTATAAGTCATGTGTTAGAGGGTCTA
TTAACCCCGCTGCAATGAAATACATCCTGTGCAACGCGACTGTTCCGCAG
AATGATAAGGTCTATGACCCCTCTGCATGGGACTTTTTGAAGGATAATGT
CCCTGAGTATGCCTTCTTTGAAGAGCTAAGGGCGGGTCAGCTCACATCAT
CAAAATATCATCATACATTTCAGTAG
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