mRNA_H-akashiwo_Contig1130.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1130.3.1
Unique NamemRNA_H-akashiwo_Contig1130.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: A0A7S3Y6J5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J5_HETAK)

HSP 1 Score: 286 bits (732), Expect = 2.750e-95
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 1
Query:    1 MITSLYVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMESILIQARTGRDNIMPGTMNVDNNY 450
            +ITSLYVPGVSDKLRRQLKGYNVDLV K GQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETK+HWGTRKGEHQGYVRRGEASKSGVANHAVNMLH+PDWEK HVVAKE N YRRRMMESILIQARTG D+ MPGTMNVDNNY
Sbjct:  138 VITSLYVPGVSDKLRRQLKGYNVDLVFKRGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKRHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHHPDWEKSHVVAKEGNTYRRRMMESILIQARTGGDDRMPGTMNVDNNY 287          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: A0A7S4DDA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA1_HETAK)

HSP 1 Score: 286 bits (732), Expect = 3.440e-91
Identity = 139/150 (92.67%), Postives = 143/150 (95.33%), Query Frame = 1
Query:    1 MITSLYVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMESILIQARTGRDNIMPGTMNVDNNY 450
            +ITSLYVPGVSDKLRRQLKGYNVDLV K GQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETK+HWGTRKGEHQGYVRRGEASKSGVANHAVNMLH+PDWEK HVVAKE N YRRRMMESILIQARTG D+ MPGTMNVDNNY
Sbjct:  472 VITSLYVPGVSDKLRRQLKGYNVDLVFKRGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKRHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHHPDWEKSHVVAKEGNTYRRRMMESILIQARTGGDDRMPGTMNVDNNY 621          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: A0A7S3XRK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRK9_HETAK)

HSP 1 Score: 146 bits (368), Expect = 1.080e-40
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    1 MITSLYVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRR 258
            ++TSLYVPGVS+KLR QLK   VDLV K GQTLGS+I NVKEKRT ERQKGVIYKIPC+HC+ECYIGET +HWGTRK EHQGYVRR
Sbjct:  186 VVTSLYVPGVSEKLRWQLKKLGVDLVFKRGQTLGSMICNVKEKRTAERQKGVIYKIPCQHCQECYIGETCRHWGTRKAEHQGYVRR 271          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: UPI0019399234 (uncharacterized protein LOC120341251 n=2 Tax=Styela clava TaxID=7725 RepID=UPI0019399234)

HSP 1 Score: 95.5 bits (236), Expect = 5.590e-22
Identity = 47/122 (38.52%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   16 YVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMES 381
            YV G+S+K+RR L+   + +  K   T+G L+SNVK++  P ++ GV+Y IPC  C   YIGETK+   TR+ EHQ  V++ +  KS ++ HA++  H  DW+   ++  E +  +R  +ES
Sbjct:   25 YVKGLSEKIRRILEDVRIKVSFKPQNTIGQLLSNVKDRPCPNKKNGVVYAIPCVDCCSIYIGETKRSLETRRKEHQRDVKQKKFEKSALSKHALSTDHSIDWDNSRILEHEIHYRKRLFLES 146          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: UPI00193A372E (uncharacterized protein LOC120347973 n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A372E)

HSP 1 Score: 97.1 bits (240), Expect = 1.400e-20
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   16 YVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMES 381
            YV G+S+K+RR L+   + +  K   T+G L+SNVKE+  P ++ GV+Y IPC  C   YIGETK+   TR+ EHQ  V++ +  KS ++ HA++  H  DW+   ++  E +  +R  +ES
Sbjct:  470 YVKGLSEKIRRILEDVRIKVSFKPQNTIGQLLSNVKERPCPNKKNGVVYAIPCVECCSIYIGETKRSLETRRKEHQRDVKQKKFEKSALSKHALSTDHSIDWDNSRILEHEIHYRKRLFLES 591          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: A0A3L8D673_OOCBI (Uncharacterized protein n=2 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8D673_OOCBI)

HSP 1 Score: 95.5 bits (236), Expect = 1.680e-20
Identity = 45/145 (31.03%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   16 YVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMESILIQARTGRDNIMPGTMNVDNNY 450
            +V G+SD L R  K YN++++  + + L  +I + K+      + GV+Y++ CK C+ CY+G+TK+H  TR  EH+  + + E + S V+ H  ++ H  DW K+ ++ +E + ++R + E I I+      N+   T N+   Y
Sbjct:  213 FVNGLSDILHRVFKSYNINVIHTINKRLDCIIKSGKDALPDSNKTGVVYRLKCKDCDACYVGQTKRHLATRVKEHRSDISKREGNWSVVSRHRASLFHDFDWSKVDILHQEQHLHKREVAEMIFIKRHHNAINLQTDTDNLPGVY 357          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: A0A3L8E3Q1_OOCBI (GIY-YIG domain-containing protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8E3Q1_OOCBI)

HSP 1 Score: 91.3 bits (225), Expect = 2.410e-20
Identity = 44/145 (30.34%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   16 YVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMESILIQARTGRDNIMPGTMNVDNNY 450
            +V G+SD L R  K YN++++  + + L  +I + K+      + GV+Y++ CK C+ CY+G+TK+H  TR  EH+  + + E + S V+ H  ++ H  DW K+ ++ +E   ++  + E I I+      N+   T N+   Y
Sbjct:   21 FVNGLSDILHRVFKSYNINVIHTINKRLDCIIKSGKDALPDSNKTGVVYRLKCKDCDACYVGQTKRHLATRVKEHRSDISKREGNWSVVSRHRASLFHDFDWSKVDILHQEQYLHKCEVAEMIFIKRHHNAINLQTDTDNLPGVY 165          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: UPI0019399E44 (uncharacterized protein LOC120331363 n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019399E44)

HSP 1 Score: 89.4 bits (220), Expect = 1.630e-18
Identity = 44/121 (36.36%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   16 YVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMME 378
            YV G+ +K+RR L+   + +  K   T+G L+SNVK++  P ++ GV+Y IPC  C   +IGETK+   T + EHQ  V++ +  KS ++ HA++  H  DW+   ++  E + YR+R+++
Sbjct:  167 YVKGLGEKIRRILEDVRIKVSFKPQNTIGQLLSNVKDRPCPNKKNGVVYAIPCVDCCSIHIGETKRSLETGRKEHQRDVKQKKFEKSALSKHALSTDHSIDWDNSRILEHEIH-YRKRLLK 286          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: A0A3L8D4B1_OOCBI (Uncharacterized protein n=1 Tax=Ooceraea biroi TaxID=2015173 RepID=A0A3L8D4B1_OOCBI)

HSP 1 Score: 84.3 bits (207), Expect = 3.790e-16
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   16 YVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMESILIQARTGRDNIMPGTMNVDNNY 450
            YV G S+ + R L+G  V++   + +TL  ++   K+K   + +  VIY+I CK C+ CY+G+TK+H  TR  EH   +++ E + S V+ H  N+ H  DW ++ V+ +E +  +R + E   I+      N+   T N+ + Y
Sbjct:  412 YVKGFSECVARILRGCQVNVTHVINKTLDGIVKCEKDKLERKNKTDVIYRINCKDCDVCYVGQTKRHLNTRISEHLSDIKKCENNWSVVSKHRDNVDHEFDWSEVEVLHQEKHLRKRLIAEMFYIKKHKTSINLQKDTDNLSDMY 556          
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Match: UPI001D077B58 (uncharacterized protein LOC123308587 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D077B58)

HSP 1 Score: 79.7 bits (195), Expect = 1.960e-15
Identity = 39/127 (30.71%), Postives = 76/127 (59.84%), Query Frame = 1
Query:   13 LYVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVNMLHYPDWEKLHVVAKESNAYRRRMMESILIQ 393
            +YVP +S++L+R +K     ++    +T+ S+ S +K++   ER  GV+YKI C+ C  CY+G+T Q+ G R  +H+   +  + S + ++ HA +  H  D++ + ++ +E+N ++R   E I I+
Sbjct:   72 IYVPRLSEQLKRLMKDSTNRVIYYYNKTVRSIFSKLKDRDPKERCSGVVYKINCRDCSVCYVGQTGQYLGNRSAQHERDCKNKKES-TALSAHASSSNHNFDFQNVEILGRENNWFKRCFKEMIYIK 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1130.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6J5_HETAK2.750e-9592.67Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A7S4DDA1_HETAK3.440e-9192.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XRK9_HETAK1.080e-4080.23Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00193992345.590e-2238.52uncharacterized protein LOC120341251 n=2 Tax=Styel... [more]
UPI00193A372E1.400e-2039.34uncharacterized protein LOC120347973 n=1 Tax=Styel... [more]
A0A3L8D673_OOCBI1.680e-2031.03Uncharacterized protein n=2 Tax=Ooceraea biroi Tax... [more]
A0A3L8E3Q1_OOCBI2.410e-2030.34GIY-YIG domain-containing protein n=1 Tax=Ooceraea... [more]
UPI0019399E441.630e-1836.36uncharacterized protein LOC120331363 n=1 Tax=Styel... [more]
A0A3L8D4B1_OOCBI3.790e-1631.72Uncharacterized protein n=1 Tax=Ooceraea biroi Tax... [more]
UPI001D077B581.960e-1530.71uncharacterized protein LOC123308587 n=1 Tax=Cocci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1130contigH-akashiwo_Contig1130:153661..154110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8090.ENSORLP00000025642
PFAMsRVT_1
Model size450
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.07e-15
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata,49D09@7742|Vertebrata
Cds size450
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.3841348-CDS-H-akashiwo_Contig1130:153660..1541101681387092.3841348-CDS-H-akashiwo_Contig1130:153660..154110Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1130 153661..154110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1130.3.1prot_H-akashiwo_Contig1130.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1130 153661..154110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1130.3.1

>prot_H-akashiwo_Contig1130.3.1 ID=prot_H-akashiwo_Contig1130.3.1|Name=mRNA_H-akashiwo_Contig1130.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
MITSLYVPGVSDKLRRQLKGYNVDLVLKMGQTLGSLISNVKEKRTPERQK
GVIYKIPCKHCEECYIGETKQHWGTRKGEHQGYVRRGEASKSGVANHAVN
MLHYPDWEKLHVVAKESNAYRRRMMESILIQARTGRDNIMPGTMNVDNNY
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mRNA from alignment at H-akashiwo_Contig1130:153661..154110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1130.3.1 ID=mRNA_H-akashiwo_Contig1130.3.1|Name=mRNA_H-akashiwo_Contig1130.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig1130:153661..154110+ (Heterosigma akashiwo CCMP452)
ATGATCACCAGTCTGTATGTACCAGGGGTATCCGACAAGTTGAGGAGGCA GCTCAAGGGGTACAACGTGGACTTGGTTTTAAAAATGGGGCAGACCCTTG GCAGTTTGATCAGCAATGTCAAGGAGAAGCGAACCCCGGAGAGGCAGAAA GGGGTGATCTATAAGATACCTTGCAAGCACTGTGAGGAGTGCTACATCGG TGAAACGAAACAACATTGGGGCACAAGGAAAGGAGAACACCAGGGCTACG TCAGAAGAGGAGAAGCAAGCAAGAGTGGTGTGGCCAACCATGCTGTAAAC ATGCTTCATTACCCCGACTGGGAGAAGTTGCATGTAGTAGCCAAAGAGAG CAACGCGTACAGAAGAAGGATGATGGAGTCAATCCTGATCCAAGCAAGAA CAGGAAGAGACAATATTATGCCTGGAACCATGAATGTGGACAACAACTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1130:153661..154110+

>mRNA_H-akashiwo_Contig1130.3.1 ID=mRNA_H-akashiwo_Contig1130.3.1|Name=mRNA_H-akashiwo_Contig1130.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig1130:153661..154110+ (Heterosigma akashiwo CCMP452)
ATGATCACCAGTCTGTATGTACCAGGGGTATCCGACAAGTTGAGGAGGCA
GCTCAAGGGGTACAACGTGGACTTGGTTTTAAAAATGGGGCAGACCCTTG
GCAGTTTGATCAGCAATGTCAAGGAGAAGCGAACCCCGGAGAGGCAGAAA
GGGGTGATCTATAAGATACCTTGCAAGCACTGTGAGGAGTGCTACATCGG
TGAAACGAAACAACATTGGGGCACAAGGAAAGGAGAACACCAGGGCTACG
TCAGAAGAGGAGAAGCAAGCAAGAGTGGTGTGGCCAACCATGCTGTAAAC
ATGCTTCATTACCCCGACTGGGAGAAGTTGCATGTAGTAGCCAAAGAGAG
CAACGCGTACAGAAGAAGGATGATGGAGTCAATCCTGATCCAAGCAAGAA
CAGGAAGAGACAATATTATGCCTGGAACCATGAATGTGGACAACAACTAC
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