mRNA_H-akashiwo_Contig1124.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1124.7.1
Unique NamemRNA_H-akashiwo_Contig1124.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A7S3XRH0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XRH0_HETAK)

HSP 1 Score: 268 bits (684), Expect = 1.270e-86
Identity = 121/169 (71.60%), Postives = 145/169 (85.80%), Query Frame = 1
Query:    1 WNMFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYLEAMINEILPRVKEHWI-KMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVKGWNIRLLPQPPHSPDLN 504
            WN+FH+DEKWFNQKQKKTR++CL  ESPE R+TIHKNHIPK+MFLSCTT PAP+PR+ G+YL GQIAIH F A+K AK SSH RPAGTLE+K VNV  +VY++AMI  ILP+VK+HW  KMG  + +RL+IQEDNASPHKL +DP+WV+AVKGWNI+LLPQP  SP+LN
Sbjct:   17 WNVFHIDEKWFNQKQKKTRAICLPKESPEVRTTIHKNHIPKIMFLSCTTKPAPDPRKPGEYLPGQIAIHPFCALKPAKKSSHNRPAGTLEMKTVNVTAEVYMKAMIKTILPKVKDHWTTKMGRSKKERLYIQEDNASPHKLAEDPKWVKAVKGWNIKLLPQPAQSPELN 185          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A392MKF8_9FABA (Transposase n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MKF8_9FABA)

HSP 1 Score: 121 bits (304), Expect = 1.030e-30
Identity = 71/172 (41.28%), Postives = 101/172 (58.72%), Query Frame = 1
Query:    1 WNMFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYL-RGQIAIHAFTAMKAAKVSSHRRPAGTLELKPV-NVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRW--VEAVKGWNIRLLPQPPHSPDLN 504
            +N  H+DEKWFN K K  +   L+DE    R+   KN IPK+MFL+   +  P    +G  L  G+I +      + A+ SS  RPAGTLE+KP+ +VNKDV    ++ +ILP +KE W +    Q   +FIQ+DNA  H    D  +  V +  G++IRL+ QPP+SPD+N
Sbjct:   19 YNTIHIDEKWFNLKVKSKKFYLLQDEEEPVRTCKSKNFIPKIMFLAA--MARPRFDAQGNVLFDGKIGLFPLVTQEPARRSSVNRPAGTLEIKPIQSVNKDVIRTYLLEKILPAIKEKWPREDIGQP--IFIQQDNARTHIDSNDEEFCRVASQDGFDIRLMRQPPNSPDMN 186          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.400e-30
Identity = 68/166 (40.96%), Postives = 95/166 (57.23%), Query Frame = 1
Query:   13 HVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHK--LRQDPRWVEAVKGWNIRLLPQPPHSPDLN 504
            H+DEKWF  K+ K  +  L  E+    ++  KNH+ KVMFL  T  P  +      +  G+I I  F   + AK SS  RP GTL  KP NV+ +VY   ++ ++LP + E W +     T  +FIQEDNA PHK  +R++ +   A KGWNI +  QPP+SPD+N
Sbjct:  267 HIDEKWFYLKRTKQTTYLLPGEAEPKSTSKSKNHMTKVMFLCATARPRWDTNNCA-WFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGS--STPEIFIQEDNAKPHKATIREEVKAAAASKGWNITVKTQPPNSPDMN 429          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A6A4Z322_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z322_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.050e-28
Identity = 68/166 (40.96%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   13 HVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVK--GWNIRLLPQPPHSPDLN 504
            HVDEKWFN  + K+R   L  E+P  R+T  K  I KVMFL+    P  +  +  +   G+I    FT    A  SS  RPAGTLEL+P+NV + +Y + +I+ ++P +K  W     E +  + IQ+DNA PH    D   V A    GW++ L  QPP+SPDLN
Sbjct:  184 HVDEKWFNATRVKSRFYLLPGETPPHRTTQSKRFITKVMFLTAVARPRWDDAK-SECWDGKIGTWHFTETVPAARSSRNRPAGTLELRPINVTRPIYKKMLIDNVIPAIKAKW---PAESSRSVVIQQDNARPHVAPWDAAVVSACTSDGWSMSLKCQPPNSPDLN 345          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A024TMH1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMH1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.020e-27
Identity = 66/169 (39.05%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    4 NMFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEA--VKGWNIRLLPQPPHSPDLN 504
            N+ H+DEKWF   + + R L   DE+   R    K HI KVMFL     P P          G++          A  SS  RPAGT  L+ VNV +DVY + ++N++LP +KE W        + +++Q+DNA PH   +D  +  A  V GW+IR+L QPP SPDLN
Sbjct:   63 NVVHLDEKWFYLTKLRRRFLVWHDETILPRYIQSKAHITKVMFLVAVARPRPG-------WDGKVGCWEIVERTTAARSSVNRPAGTEVLRSVNVTRDVYRDLLVNKVLPAIKEKWPTAN----EPVYLQQDNARPHISPEDAAFAAAACVGGWDIRILNQPPKSPDLN 220          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: K7LU34_SOYBN (Uncharacterized protein n=9 Tax=Glycine subgen. Soja TaxID=1462606 RepID=K7LU34_SOYBN)

HSP 1 Score: 117 bits (292), Expect = 1.350e-27
Identity = 67/171 (39.18%), Postives = 96/171 (56.14%), Query Frame = 1
Query:    1 WNMFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPV-NVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVK--GWNIRLLPQPPHSPDLN 504
            +N+ H+DEKWF   +K  R   L DE    RS   KN +PKVMFL+    P  +  +   +  G+I I  F   + AK +S  R AGT+E K + ++N+D+     I ++LP  KE W +     T  +FIQ+DNA  H    DP +V+A    G++IRL+ QPP+SPD N
Sbjct:  239 YNIIHIDEKWFYMTKKSERYYLLPDEDKPHRSCKSKNFVPKVMFLTAVARPRFDSEKNVTF-SGKIGIFPFVTQEPAKRTSVNRVAGTMETKAITSINRDLIRSVFIEKVLPATKEVWPRDELGST--IFIQQDNARTHINPDDPEFVQAATQDGFDIRLMCQPPNSPDFN 406          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: W4FWJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWJ6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.920e-27
Identity = 66/166 (39.76%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   13 HVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVK--GWNIRLLPQPPHSPDLN 504
            HVDEKWF+    ++R   L  E P  RST  K  I KVMFLS    P  +   + ++  G+I    FT    A  SS  RPAGT+EL+PVNV + VY + +I+ ++P +K  W     + +  +FIQ+DNA  H    D   ++A    GW ++L  QPP+SPD+N
Sbjct:    6 HVDEKWFHATPIRSRFYLLPGEEPPHRSTQSKRFITKVMFLSAVARPLWD-NAKSEWFDGKIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVYKKMLIDNVIPAIKALW---PADCSKTVFIQQDNARLHVPPSDADIIKACTSDGWAMKLKYQPPNSPDMN 167          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A1U8HCR4_CAPAN (uncharacterized protein LOC107876564 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HCR4_CAPAN)

HSP 1 Score: 114 bits (286), Expect = 1.970e-27
Identity = 66/171 (38.60%), Postives = 99/171 (57.89%), Query Frame = 1
Query:    1 WNMFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVN-VNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVK--GWNIRLLPQPPHSPDLN 504
            +N  H+DEKWF   +K  R   L ++    R+   KN+I KVMFL  T  P  + R   +   G+I I+ F   +AAK  S  R A TLE K ++ +N+DV    +I +I+P +K+ W+K   +    +FIQ+DNA PH   +D  + +  +  G++IRL+ QPP+SPDLN
Sbjct:   98 YNTVHIDEKWFYMTRKCQRYYLLPEKEDPVRTCKSKNYIEKVMFLVATARPRFDSREN-ELFSGKIGIYPFITQQAAKRDSVNRVASTLETKSISSINRDVMRSFLIEKIIPDIKKIWLKE--DSCYLIFIQQDNAKPHIRHKDEEFQQVAQQDGFDIRLICQPPNSPDLN 265          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: A0A6A4YXI9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YXI9_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.340e-27
Identity = 67/166 (40.36%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   13 HVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVK--GWNIRLLPQPPHSPDLN 504
            HVDEKWF   +   R      E+P  R+   K  I KVMFLS    P  N    G++  G+I    FT   AA  +S  RPAGTLE +PV+V + VY   +I++++P +K  W          + IQ+DNA PH    D   V+A K  GWN++++ QPP+SPDLN
Sbjct:  180 HVDEKWFFATRVSKRYYLAPGEAPPHRTCKSKRFISKVMFLSAVARPRLNDDT-GEWFDGKIGTWHFTEKVAAARTSRNRPAGTLETQPVSVTRPVYKAMLIDKVIPTIKSKWPSSAGRN---VIIQQDNARPHVPPSDSAIVDACKSGGWNMKVVYQPPNSPDLN 341          
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Match: UPI0000F6FE50 (uncharacterized protein LOC112417147 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI0000F6FE50)

HSP 1 Score: 110 bits (274), Expect = 3.520e-27
Identity = 67/170 (39.41%), Postives = 93/170 (54.71%), Query Frame = 1
Query:    4 NMFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPAPNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPV-NVNKDVYLEAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVK--GWNIRLLPQPPHSPDLN 504
            N+ H+DEKWF   +K      L DE    R+   KN I KVMFL     P  +     +   G+I +  F   + AK +S  R AGTLE KP+ +V K+V    +I ++LP ++E W +      D +FIQ+DNA  H    D  + EA K  G++IRL+ QPP+SPDLN
Sbjct:    3 NIVHIDEKWFYITKKSMHYYLLPDEEEPLRTCKSKNFIAKVMFLVAVARPRFDAEGN-EVFSGKIGVFPFVTQEPAKRNSVNRAAGTLETKPITSVTKEVSRTFLIEKVLPAIREKWPEDCVR--DPIFIQQDNARTHIDHNDAEFCEAAKLGGFDIRLMCQPPNSPDLN 169          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1124.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XRH0_HETAK1.270e-8671.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A392MKF8_9FABA1.030e-3041.28Transposase n=1 Tax=Trifolium medium TaxID=97028 R... [more]
A0A448ZNT1_9STRA1.400e-3040.96Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6A4Z322_9STRA3.050e-2840.96Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024TMH1_9STRA1.020e-2739.05Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
K7LU34_SOYBN1.350e-2739.18Uncharacterized protein n=9 Tax=Glycine subgen. So... [more]
W4FWJ6_9STRA1.920e-2739.76Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A1U8HCR4_CAPAN1.970e-2738.60uncharacterized protein LOC107876564 n=1 Tax=Capsi... [more]
A0A6A4YXI9_9STRA2.340e-2740.36Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
UPI0000F6FE503.520e-2739.41uncharacterized protein LOC112417147 n=1 Tax=Medic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1124contigH-akashiwo_Contig1124:304464..304967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3847.GLYMA12G11564.1
PFAMsHTH_Tnp_Tc3_2
Model size504
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.72e-27
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size498
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.4557836-UTR-H-akashiwo_Contig1124:304463..3044691681387090.4557836-UTR-H-akashiwo_Contig1124:304463..304469Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1124 304464..304469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.4647784-CDS-H-akashiwo_Contig1124:304469..3049671681387090.4647784-CDS-H-akashiwo_Contig1124:304469..304967Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1124 304470..304967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1124.7.1prot_H-akashiwo_Contig1124.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1124 304470..304967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1124.7.1

>prot_H-akashiwo_Contig1124.7.1 ID=prot_H-akashiwo_Contig1124.7.1|Name=mRNA_H-akashiwo_Contig1124.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=166bp
MFHVDEKWFNQKQKKTRSLCLKDESPEARSTIHKNHIPKVMFLSCTTLPA
PNPRRRGKYLRGQIAIHAFTAMKAAKVSSHRRPAGTLELKPVNVNKDVYL
EAMINEILPRVKEHWIKMGYEQTDRLFIQEDNASPHKLRQDPRWVEAVKG
WNIRLLPQPPHSPDLN
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mRNA from alignment at H-akashiwo_Contig1124:304464..304967+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1124.7.1 ID=mRNA_H-akashiwo_Contig1124.7.1|Name=mRNA_H-akashiwo_Contig1124.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig1124:304464..304967+ (Heterosigma akashiwo CCMP452)
TGGAACATGTTTCACGTCGATGAGAAATGGTTTAATCAGAAACAGAAAAA GACCAGATCGCTCTGTCTTAAAGATGAATCTCCTGAAGCAAGGTCTACTA TTCACAAAAATCACATTCCGAAGGTGATGTTTCTGTCTTGCACGACCTTG CCTGCCCCGAATCCCAGAAGGCGAGGTAAGTATCTCCGCGGTCAGATCGC CATCCATGCATTTACCGCAATGAAGGCTGCAAAGGTTAGTTCTCACAGAC GACCTGCAGGGACTCTTGAGTTGAAGCCTGTCAATGTGAATAAAGATGTG TACTTGGAGGCCATGATTAATGAAATCTTGCCCCGTGTCAAGGAGCATTG GATAAAAATGGGATACGAACAAACAGATCGCCTCTTCATTCAGGAGGACA ACGCTTCCCCGCACAAGCTTAGGCAGGACCCGAGGTGGGTGGAAGCTGTC AAGGGCTGGAACATCAGGCTACTTCCTCAGCCACCCCATAGTCCCGATCT CAAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1124:304464..304967+

>mRNA_H-akashiwo_Contig1124.7.1 ID=mRNA_H-akashiwo_Contig1124.7.1|Name=mRNA_H-akashiwo_Contig1124.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=498bp|location=Sequence derived from alignment at H-akashiwo_Contig1124:304464..304967+ (Heterosigma akashiwo CCMP452)
ATGTTTCACGTCGATGAGAAATGGTTTAATCAGAAACAGAAAAAGACCAG
ATCGCTCTGTCTTAAAGATGAATCTCCTGAAGCAAGGTCTACTATTCACA
AAAATCACATTCCGAAGGTGATGTTTCTGTCTTGCACGACCTTGCCTGCC
CCGAATCCCAGAAGGCGAGGTAAGTATCTCCGCGGTCAGATCGCCATCCA
TGCATTTACCGCAATGAAGGCTGCAAAGGTTAGTTCTCACAGACGACCTG
CAGGGACTCTTGAGTTGAAGCCTGTCAATGTGAATAAAGATGTGTACTTG
GAGGCCATGATTAATGAAATCTTGCCCCGTGTCAAGGAGCATTGGATAAA
AATGGGATACGAACAAACAGATCGCCTCTTCATTCAGGAGGACAACGCTT
CCCCGCACAAGCTTAGGCAGGACCCGAGGTGGGTGGAAGCTGTCAAGGGC
TGGAACATCAGGCTACTTCCTCAGCCACCCCATAGTCCCGATCTCAAC
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