mRNA_H-akashiwo_Contig1122.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1122.9.1
Unique NamemRNA_H-akashiwo_Contig1122.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1122.9.1 vs. uniprot
Match: A0A7S3Y266_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y266_HETAK)

HSP 1 Score: 123 bits (308), Expect = 2.020e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 FSTALRFAWELQGLKIVSEEKVGVTLFGTTNKGPGEDFLQDNVYELQSLDIPSAQNIKEL 180
            FSTALRFAWELQGLKIVSEEKVGVTLFGTTNKGPGEDFLQDNVYELQSLDIPSAQNIKEL
Sbjct:   12 FSTALRFAWELQGLKIVSEEKVGVTLFGTTNKGPGEDFLQDNVYELQSLDIPSAQNIKEL 71
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1122.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y266_HETAK2.020e-31100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1122contigH-akashiwo_Contig1122:380885..381346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog6087.XP_002160929.2
Preferred nameXRCC6
PFAMsKu,Ku_C,Ku_N,SAP
Model size182
Max annot lvl33208|Metazoa
KEGG koko:K10884
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000723,GO:0000726,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0001067,GO:0001775,GO:0001817,GO:0001819,GO:0001932,GO:0001934,GO:0002200,GO:0002218,GO:0002252,GO:0002253,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0002562,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003723,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006266,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006972,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008022,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009314,GO:0009628,GO:0009651,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010165,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010562,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010720,GO:0012505,GO:0016032,GO:0016043,GO:0016192,GO:0016444,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016829,GO:0016835,GO:0016887,GO:0017111,GO:0019042,GO:0019043,GO:0019219,GO:0019220,GO:0019222,GO:0022008,GO:0022607,GO:0030141,GO:0030154,GO:0030332,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032200,GO:0032268,GO:0032270,GO:0032392,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032508,GO:0032940,GO:0032991,GO:0032993,GO:0033151,GO:0033554,GO:0033674,GO:0034641,GO:0034774,GO:0036230,GO:0042119,GO:0042127,GO:0042162,GO:0042325,GO:0042327,GO:0042538,GO:0042592,GO:0042623,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043549,GO:0043564,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045055,GO:0045088,GO:0045089,GO:0045321,GO:0045595,GO:0045597,GO:0045859,GO:0045860,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045937,GO:0045944,GO:0046483,GO:0046903,GO:0046982,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048660,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051259,GO:0051262,GO:0051276,GO:0051290,GO:0051291,GO:0051338,GO:0051347,GO:0051575,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060205,GO:0060249,GO:0060255,GO:0060284,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070419,GO:0071103,GO:0071214,GO:0071470,GO:0071472,GO:0071474,GO:0071475,GO:0071478,GO:0071479,GO:0071480,GO:0071481,GO:0071704,GO:0071840,GO:0075713,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097680,GO:0097708,GO:0098687,GO:0099503,GO:0101002,GO:0104004,GO:0140097,GO:1901360,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904813,GO:1990391,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue0.000111
EggNOG OGsKOG2327@1|root,KOG2327@2759|Eukaryota,38BYP@33154|Opisthokonta,3BFEB@33208|Metazoa
Description5'-deoxyribose-5-phosphate lyase activity
Cds size180
COG categoryL
BRITEko00000,ko00001,ko00002,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387090.1051114-CDS-H-akashiwo_Contig1122:380884..3809711681387090.1051114-CDS-H-akashiwo_Contig1122:380884..380971Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 380885..380971 +
1681387090.1172788-CDS-H-akashiwo_Contig1122:381252..3813451681387090.1172788-CDS-H-akashiwo_Contig1122:381252..381345Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1122 381253..381345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1122.9.1prot_H-akashiwo_Contig1122.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1122 380885..381345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1122.9.1

>prot_H-akashiwo_Contig1122.9.1 ID=prot_H-akashiwo_Contig1122.9.1|Name=mRNA_H-akashiwo_Contig1122.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
FSTALRFAWELQGLKIVSEEKVGVTLFGTTNKGPGEDFLQDNVYELQSLD
IPSAQNIKEL
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mRNA from alignment at H-akashiwo_Contig1122:380885..381346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1122.9.1 ID=mRNA_H-akashiwo_Contig1122.9.1|Name=mRNA_H-akashiwo_Contig1122.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=462bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:380885..381346+ (Heterosigma akashiwo CCMP452)
TTTTCCACTGCCTTAAGATTTGCTTGGGAGCTACAAGGGCTGAAGATCGT
GTCCGAAGAAAAAGTTGGCGTTACTCTTTTCGGCACGGTACGTGGTGAAT
AAGGAAATCATGCGTATCTAGCATAGAACATAAGGAAAGGACAACCAAAC
TGAATAGTCTCAGCCCTTGGTGTGATATACCTGGTGGTATTCGTATAAAA
TTATGCTGGAGTAATAGTTGCTTCAAAATTTGGGACTGTGGACGGTTTAT
AGGACGAATCAATAACGGAAAAAGCAAGAAGTCAAGGCGAATGTATAAGT
GCGCTTGTCTTTTGCCTTCATCAGGTGGATGATTGAAGTATCGCCTTCTT
CATTTGTGTTTTTGACAGACAAACAAAGGACCAGGCGAGGATTTCCTTCA
AGACAACGTTTATGAACTCCAGTCTTTGGACATTCCTAGTGCACAGAACA
TCAAAGAACTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1122:380885..381346+

>mRNA_H-akashiwo_Contig1122.9.1 ID=mRNA_H-akashiwo_Contig1122.9.1|Name=mRNA_H-akashiwo_Contig1122.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig1122:380885..381346+ (Heterosigma akashiwo CCMP452)
TTTTCCACTGCCTTAAGATTTGCTTGGGAGCTACAAGGGCTGAAGATCGT
GTCCGAAGAAAAAGTTGGCGTTACTCTTTTCGGCACGACAAACAAAGGAC
CAGGCGAGGATTTCCTTCAAGACAACGTTTATGAACTCCAGTCTTTGGAC
ATTCCTAGTGCACAGAACATCAAAGAACTT
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