mRNA_H-akashiwo_Contig112.33.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.33.1
Unique NamemRNA_H-akashiwo_Contig112.33.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A1U7ZLT5_NELNU (dnaJ homolog subfamily B member 1-like isoform X1 n=2 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZLT5_NELNU)

HSP 1 Score: 119 bits (297), Expect = 7.380e-30
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   53 INFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGGRGSPIDP-----FFATGFGASPF 391
            +++YD+L V KNA +  +K++YRKLA+KWHPDKNP+NK+EAE  FK +SEAY VLSDPQKR  YD YG +G+         P  TG G   FP G  S  +P      FA  FG+SPF
Sbjct:    3 VDYYDILKVNKNATDDDVKKSYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYEVLSDPQKRAVYDQYGEEGLKGAP-----PPGTGGGGFPFPNGSSSKFNPRNAEDIFAEFFGSSPF 115          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: F0YF77_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF77_AURAN)

HSP 1 Score: 112 bits (279), Expect = 2.970e-29
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:   59 FYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGG-RGSPID 355
            +Y VLGV ++AD+SQ+K+AYRKLA+K+HPDKNPD+K  AEE FK V+EAY VLSDPQKR  YD +G+DG  A E   +     G G G FPGG RG  +D
Sbjct:   12 YYKVLGVHRSADDSQLKKAYRKLAIKYHPDKNPDDKR-AEEYFKAVAEAYDVLSDPQKRAGYDRFGKDGAKAAEQGQDM-GGMGQGFGGFPGGSRGPQMD 109          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A7S2Z782_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z782_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 3.600e-29
Identity = 58/101 (57.43%), Postives = 71/101 (70.30%), Query Frame = 2
Query:   62 YDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGGRGS-PIDPF 361
            YD+LGVG++A ES+IK+AYRK A+KWHPDKNPDNKEEAE  FKLV+EAY +LSDP+KR+ YD YG + V +           G G G FP   G   +DPF
Sbjct:   17 YDILGVGEDATESEIKRAYRKQAIKWHPDKNPDNKEEAELRFKLVAEAYGILSDPEKREVYDAYGLEAVKSGAAPRG--GRQGAGMGGFPRSSGGFHVDPF 115          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A2I0B8T0_9ASPA (DnaJ protein like n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0B8T0_9ASPA)

HSP 1 Score: 115 bits (288), Expect = 1.850e-28
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 2
Query:   53 INFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGR---GDFPGGRGSPIDPFFATGFGASPF 391
            +++YD+L VGKNA +  +K+AYRKLA+KWHPDKNP NK+EAE  FK +SEAY VLSDPQKR+ YD YG +G+  +      P ++G G    GDF   R +  +  FA  FG+SPF
Sbjct:    3 LDYYDILKVGKNATDEDLKKAYRKLAMKWHPDKNPTNKKEAEAKFKQISEAYEVLSDPQKRELYDQYGEEGLKGIPP----PGSSGGGANGSGDFFNPRNA--EDIFAEFFGSSPF 112          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A8B6XJ43_HYDVU (dnaJ homolog subfamily B member 6-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XJ43_HYDVU)

HSP 1 Score: 109 bits (273), Expect = 2.030e-28
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   59 FYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAA 274
            +Y +LGVGK+A ++ IK+AYRKLA+KWHPDKNPD K EAEE+FK +SEAY VLSD +KR  YD+YG+DG+ A
Sbjct:    5 YYSILGVGKSATDNDIKKAYRKLALKWHPDKNPDKKAEAEEMFKKISEAYEVLSDKEKRNVYDVYGKDGLKA 76          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: UPI00077A2B8B (dnaJ homolog subfamily B member 6-B-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A2B8B)

HSP 1 Score: 108 bits (271), Expect = 2.720e-28
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 2
Query:   59 FYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRD 262
            +YDVLGV KN+ +  IK+AYRKLA+KWHPDKNPDNK++AEE FK +SEAY VLSDP+KRQ YD YG++
Sbjct:    4 YYDVLGVPKNSSDQDIKKAYRKLALKWHPDKNPDNKQQAEENFKEISEAYDVLSDPEKRQVYDRYGKE 71          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A0R3U1S7_MESCO (J domain-containing protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3U1S7_MESCO)

HSP 1 Score: 113 bits (282), Expect = 3.260e-28
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 2
Query:   44 MDNINFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGGRGSP----IDPF--FATGFGASPF 391
            M+ +++Y VL V +NAD   IK+AYRKLA+KWHPDKNPDNKEEAE  FKLVSEAY VLSDPQKR+ YD++G++G++            GP   +F G          DPF  FA  FGAS F
Sbjct:    1 MEELDYYSVLKVDRNADGETIKKAYRKLALKWHPDKNPDNKEEAERRFKLVSEAYEVLSDPQKRRIYDVHGKEGLSNG----------GPSPSNFSGYDAFSSFHFTDPFELFAEVFGASVF 112          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A0R3X7Q2_HYDTA (J domain-containing protein n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3X7Q2_HYDTA)

HSP 1 Score: 112 bits (281), Expect = 5.120e-28
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 2
Query:   38 ATMDNINFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGGRGSPI---DPF--FATGFGASPF 391
            ++M+ +++Y VL + + AD   IK+AYRKLA++WHPDKNPDNKEEAE  FKLVSEAY VLSDPQKR+ YD YG++G+             G G  DF    G P    DP   FA  FG+S F
Sbjct:   12 SSMEEVDYYTVLKIDRGADGESIKKAYRKLALRWHPDKNPDNKEEAERQFKLVSEAYEVLSDPQKREIYDTYGKEGLTNG----------GVGPSDFSAFGGFPFHFRDPMEIFAQVFGSSLF 124          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A426ZNM1_ENSVE (J domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A426ZNM1_ENSVE)

HSP 1 Score: 111 bits (277), Expect = 6.460e-28
Identity = 60/122 (49.18%), Postives = 73/122 (59.84%), Query Frame = 2
Query:   53 INFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGGRGSPID---------PFFATGFGASPF 391
            +++Y++L VGKNA E  +K+AYRKLA+KWHPDKNP NK+EAE  FK +SEAY VLSDPQKR  YD YG DG+  +                 PG  G P D           FA  FG+SPF
Sbjct:   32 VDYYNILKVGKNASEEDLKKAYRKLAMKWHPDKNPTNKKEAEAKFKKISEAYEVLSDPQKRGVYDQYGEDGLKGMPP---------------PGSSGGPNDVHFNPRNAEDIFAEFFGSSPF 138          
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Match: A0A7S3JK23_9SPIT (Hypothetical protein n=2 Tax=Euplotes harpa TaxID=151035 RepID=A0A7S3JK23_9SPIT)

HSP 1 Score: 112 bits (280), Expect = 8.520e-28
Identity = 51/84 (60.71%), Postives = 68/84 (80.95%), Query Frame = 2
Query:   26 FNEKATMDNI---NFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKLVSEAYSVLSDPQKRQAYDLYGRDGV 268
            F +  TM N+   +FY++LGV K A +++IK+AYRKLA+KWHPDKNPDNKEEAEE FK ++EAY VLSD  KR+ YD+YG++G+
Sbjct:    5 FRKTHTMANLKSDDFYEILGVSKEASDAEIKKAYRKLAIKWHPDKNPDNKEEAEENFKKIAEAYEVLSDANKRKTYDMYGKEGL 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U7ZLT5_NELNU7.380e-3051.69dnaJ homolog subfamily B member 1-like isoform X1 ... [more]
F0YF77_AURAN2.970e-2959.00J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
A0A7S2Z782_9CHLO3.600e-2957.43Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A2I0B8T0_9ASPA1.850e-2852.59DnaJ protein like n=1 Tax=Apostasia shenzhenica Ta... [more]
A0A8B6XJ43_HYDVU2.030e-2866.67dnaJ homolog subfamily B member 6-like n=1 Tax=Hyd... [more]
UPI00077A2B8B2.720e-2870.59dnaJ homolog subfamily B member 6-B-like n=1 Tax=A... [more]
A0A0R3U1S7_MESCO3.260e-2853.28J domain-containing protein n=2 Tax=Mesocestoides ... [more]
A0A0R3X7Q2_HYDTA5.120e-2851.22J domain-containing protein n=2 Tax=Hydatigena tae... [more]
A0A426ZNM1_ENSVE6.460e-2849.18J domain-containing protein n=2 Tax=Ensete ventric... [more]
A0A7S3JK23_9SPIT8.520e-2860.71Hypothetical protein n=2 Tax=Euplotes harpa TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:746561..747385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4432.XP_010254209.1
PFAMsDnaJ,DnaJ_C
Model size394
Max annot lvl35493|Streptophyta
KEGG koko:K09510
Hectar predicted targeting categoryother localisation
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0008047,GO:0008150,GO:0016020,GO:0030234,GO:0031974,GO:0031981,GO:0032781,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0050790,GO:0051087,GO:0051336,GO:0051345,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0070013,GO:0071944,GO:0098772
Exons4
Evalue1.41e-30
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota,37RT4@33090|Viridiplantae,3G7UU@35493|Streptophyta
DescriptionDnaJ homolog subfamily B member
Cds size351
COG categoryO
BRITEko00000,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.1650345-UTR-H-akashiwo_Contig112:746560..7466031681387089.1650345-UTR-H-akashiwo_Contig112:746560..746603Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 746561..746603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387089.17804-CDS-H-akashiwo_Contig112:746603..7467051681387089.17804-CDS-H-akashiwo_Contig112:746603..746705Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 746604..746705 +
1681387089.1879532-CDS-H-akashiwo_Contig112:746840..7468971681387089.1879532-CDS-H-akashiwo_Contig112:746840..746897Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 746841..746897 +
1681387089.1964393-CDS-H-akashiwo_Contig112:747067..7471881681387089.1964393-CDS-H-akashiwo_Contig112:747067..747188Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 747068..747188 +
1681387089.2043104-CDS-H-akashiwo_Contig112:747314..7473851681387089.2043104-CDS-H-akashiwo_Contig112:747314..747385Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 747315..747385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.33.1prot_H-akashiwo_Contig112.33.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 746604..747385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.33.1

>prot_H-akashiwo_Contig112.33.1 ID=prot_H-akashiwo_Contig112.33.1|Name=mRNA_H-akashiwo_Contig112.33.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MDNINFYDVLGVGKNADESQIKQAYRKLAVKWHPDKNPDNKEEAEEIFKL
VSEAYSVLSDPQKRQAYDLYGRDGVAAVEDEDNYPAATGPGRGDFPGGRG
SPIDPFFATGFGASPFF
back to top

mRNA from alignment at H-akashiwo_Contig112:746561..747385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.33.1 ID=mRNA_H-akashiwo_Contig112.33.1|Name=mRNA_H-akashiwo_Contig112.33.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=825bp|location=Sequence derived from alignment at H-akashiwo_Contig112:746561..747385+ (Heterosigma akashiwo CCMP452)
AGTAGATTGACATAAACGGGGCAAATTCAACGAAAAGGCAACGATGGACA ATATCAACTTCTACGATGTTCTTGGTGTTGGGAAAAACGCCGACGAAAGC CAAATTAAGCAGGCTTACAGAAAACTAGCTGTGAAATGGCACCCTGTAAG CCAAGTGGAACCATATTTAGTCAAAAATTATCTCAACTTTTTTTTTTGCT TGTTTGAGAGCTTTCCAAATGGAAAATGTACGACTGTTGGCAGCAAAAAA CTCTTCCGTCCTCCCTGTTTTTGGAAATAGGACAAAAACCCTGATAACAA AGAAGAAGCCGAAGAAATATTCAAGCTTGTGTCCGAGGTGATATTCTGAA ATCACTATGTATAATACTCCTCTCTCAGCAATAAATTTTGGTTCCTCTCC ACCTTTGTGGAGAAATATACATATCTCTGACACCGAATGAAAGCAAAATT CCGATTATCCACCACTGCCCTGAGAATATTTGGTGTTGTCCTTGCTGCTG CCTCCAGGCGTATTCCGTGCTAAGTGACCCACAGAAGCGCCAGGCATATG ACTTGTATGGGCGAGATGGAGTTGCTGCAGTTGAAGACGAGGATAATTAT CCGGCAGCAACGGGCCCCGGCCGTGGAGGTGGGTGCAGCGTGGATCTTTT GATGTGCCCTTTTTGGCACTTTGGCGAAATCCCATCACATCACAAACTTC TTGTCTACCGAAGTATTATGACCCCCAACCCTGCCGCGTTGCCCTTCCCC CCAGATTTCCCTGGCGGACGGGGCTCCCCCATCGACCCTTTCTTCGCTAC GGGGTTCGGTGCCAGTCCGTTCTTC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig112:746561..747385+

>mRNA_H-akashiwo_Contig112.33.1 ID=mRNA_H-akashiwo_Contig112.33.1|Name=mRNA_H-akashiwo_Contig112.33.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig112:746561..747385+ (Heterosigma akashiwo CCMP452)
ATGGACAATATCAACTTCTACGATGTTCTTGGTGTTGGGAAAAACGCCGA
CGAAAGCCAAATTAAGCAGGCTTACAGAAAACTAGCTGTGAAATGGCACC
CTGACAAAAACCCTGATAACAAAGAAGAAGCCGAAGAAATATTCAAGCTT
GTGTCCGAGGCGTATTCCGTGCTAAGTGACCCACAGAAGCGCCAGGCATA
TGACTTGTATGGGCGAGATGGAGTTGCTGCAGTTGAAGACGAGGATAATT
ATCCGGCAGCAACGGGCCCCGGCCGTGGAGATTTCCCTGGCGGACGGGGC
TCCCCCATCGACCCTTTCTTCGCTACGGGGTTCGGTGCCAGTCCGTTCTT
C
back to top