mRNA_H-akashiwo_Contig112.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.2.1
Unique NamemRNA_H-akashiwo_Contig112.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:106759..110068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size269
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.4620566-CDS-H-akashiwo_Contig112:106758..1068091681387087.4620566-CDS-H-akashiwo_Contig112:106758..106809Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 106759..106809 -
1681387087.4710615-CDS-H-akashiwo_Contig112:107840..1079801681387087.4710615-CDS-H-akashiwo_Contig112:107840..107980Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 107841..107980 -
1681387087.4798565-CDS-H-akashiwo_Contig112:109992..1100591681387087.4798565-CDS-H-akashiwo_Contig112:109992..110059Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 109993..110059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.48886-UTR-H-akashiwo_Contig112:110059..1100681681387087.48886-UTR-H-akashiwo_Contig112:110059..110068Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 110060..110068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.2.1prot_H-akashiwo_Contig112.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 106759..110059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.2.1

>prot_H-akashiwo_Contig112.2.1 ID=prot_H-akashiwo_Contig112.2.1|Name=mRNA_H-akashiwo_Contig112.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=86bp
MNHKDFYHPICKKMVGKDLGVEESLFMTPKPPATKKKATPTQPPVATAMA
AADNPRGKAMAGESSRSALGMAGGVLLGALAAAAVA
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mRNA from alignment at H-akashiwo_Contig112:106759..110068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.2.1 ID=mRNA_H-akashiwo_Contig112.2.1|Name=mRNA_H-akashiwo_Contig112.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3310bp|location=Sequence derived from alignment at H-akashiwo_Contig112:106759..110068- (Heterosigma akashiwo CCMP452)
AAAACATTTATGAACCATAAAGACTTTTACCATCCGATTTGTAAAAAAAT
GGTTGGGAAAGATCTAGGTGTTGAAGGTATTATCATTATATATATACACA
CACATCATTAAACTTGGAGTGCGCAAATCTTTACCCATGTATCTGTATCC
ACCTACTCCAAAATATTATGAATCAGAATCGACAATTCTGCACACAAATT
ACTATTTTGGGGCATCTCAGAAATGGAATTGGAATGCATCATGCATGTAT
ATACATATAGTGTTTTTTTTTTGTGAAGGTGAAAGGTGTTAAAGTTGATA
TTTCAAACAGTAGCTCCTACTTGCGCTTCTTTTTCTGCAATTCACATTGA
GAAAACCACCGTCATCGATAGTATTTTGAATTTTTTGGCTATTCTGGAAC
AATAATAGTGGATCTTCTTCCTCTACCCCTAGCTCCAGAATGTACCGCAA
ACTATCCAACAAACATACCACCCTAATCGGAGGTACATTCTTGGCATCCC
CGAGCTAGCCACGCCACACATTCACAGTTATTATAACCCCCTCATTGGGC
TATGCCCTCCGAGTCGGCTCATTGGGTATGTGCTCACTGAGTTAGGGCTC
ACCACCCAAACAGGACCTGTAGGTGATCCTTGGTGCGCGTGATACTGCTG
CTGGAGTATATATAATACTCTGCTGCTGTACGAGCTGCTGATGCTGCAGT
TGGAACATTCGGTACTGCTCCTTGAGCTACCTCCTCTGCTCTGCTGCTGC
TGCTGCTGCTGATCCAGTTGCTGCACAAACTGCTCATAGACCCCTTGATT
CACCAACCTCTGCTGCTGCAAGGTGGCATCTGGTTGGTGGAGGCTCAGCC
CCCGCTCCCCAAATTTCTCCTCCTTCTCCGGTGGTGCGGGTGTCCTTCCG
GGCGGCACCCCTGGCTCCTCATCATGGTCGGCAGGCTCGGCCATCACCAG
CTCTGTTGGCACTGGTTGTGGCCGGCCGCGACTGGCCACGCCCCCTGGTG
TGCGCTCTGCTTATTCCCAGTGGCACCCGCCTGCTCACCACTATTACCAC
CATACTCACCCCCCTGAGCAGGCGTGGGCCCTGTCCCCAGTGGACACTCC
TTTGCTCTGTTGTCCCCCATGGCTGCGTGCTCAGGCAGTGGTGTAATGTG
CCGCTTCCATTGTCGTTTTTTGCCAGATGACTTTGGACCGACATTCTTCT
TCCTCTCGGCGGGCACTTTCTGCTGCTGGTTCTGCTGGTTGTTGTTGCCC
CTCATAGGGCATAGCTTCTTTAGATGCCGATTAGACCTATACATCGCCAG
CAAAGCAGCTTTTCACGGCATTTACCTCTGCTCCACAGTCAGCTTGCTTG
TGGCCCAGCTGCAAGCAACTAAAGTATCTCTGCTTTTAGCCCAGCTTATT
AGCGCTGTCATTGACAATTGTGCTTTCAGCACCCACGGTGGCGTTCTTGG
CGCTTCCAACAGGGACCCCCAAAGCAAGACTGGGTCTCGCATAATCCTCA
CTTAAGCTGCCATGTCTTTGGTCAAAGAGAACAGATCCTCCAGGACTTCC
TCGTAGCTCGGCTGCCTCTTTTTTCAGCTGCTTGAGCTCGATCTCACCCA
TGCCGGATGAACCCGACAGTCTATTTCCGTTTGTTCCCCCCCTCTTCTAA
AAAGAGGATTCTCAACGCCCTTTTTACCGGCAATCAAGCATTTCGTGACG
GGGTCGCTCTCCCCGGAACACCACCCATTTCGCTCCACCAAGGTCATCAG
ATCTACGCTGATTTCAAGTCCCATCCTCGAAACCAGCGAACTCTCTTTGC
TTTCCATGTTTTTGGGTGAAGTAGAAAGGTATTAAAGTTGATATTTCAAA
CAGCAGCGCCTACTTGTGCTTCTTCTTCTTCTGCACTTCATATGAGAAAA
CCACGGCCATCGATCCTATTTTGAATTTCTTGGCTATTCTGGAACAAGAA
GAATGAATTTTCTTCCTCTAATCCTAGCCCCAGAATGTACCGCAAATTAT
CCAACAAACACATTGTATATATTAAATATTATGCATTCTCAATACCATGA
TAACCCGCCTCCTTGGACCGCTTTGCCCACTCTTACAGAGAGTCTCTTTA
TGACGCCCAAGCCACCGGCGACCAAGAAGAAGGCAACTCCAACACAGCCG
CCTGTGGCCACCGCCATGGCCGCCGCAGACAACCCCAGAGGGAAGGCAAT
GGCCGGAGAGTCCAGCAGGAGCGCCTTGGTAAGATGTCAATGCCAGTCAA
AGATAATGTAAAGAGGTATATTTTTGATGTTGAAGTGGAGCGACATCATC
AGGGCCATGATTTCACTTATCCGGTGCTATATGTTGTGTTGGAGTAAGCA
GCAAGTATTCAGCTCTTGAGTGGTGCAAGGTTCAAACAACAGAATCAATA
ATCTTCTGGGACATGAGTGTGAATGATTTCTTTAGATGTTAAGTGAGGTA
GAATTGATACATCAGCAAAAATATGCCCAGGGGAGGAGGTTGACATTTCA
ACAATGATGACAATGAGTACTGTACTCCTACAATAGACTGCGATGAGGCC
ACAGGGCAATAGAACATGTAGGATTTCGCGCAGCTGGGGCTTCACGGTCA
GTCAGTAGCAAATCGCTGTACGACGAAGTGTGCAGATGTCAAGGCGGCCT
GCAAGTAGACAGTGGTTGTGGCTCAGGATGTGAGAGGAGAACATTGCAAG
TTATTAGGAATGAAGGGGGGGAGGGGGGGGATGATCAAGACATCAAAAAG
TAATTCACAGCATAAAACACAAGTATGTAGTATATAGAATCGATTTGCCA
ACTTGACATTGAACCACGAGAAGCAGCAGCAGAGCAGCAGTAGTTCGACG
CTGAACATAGGAAGTCAGAGTCAAATTGATCCAGTCGTTATTGTGATATT
CACCTTTCTTTTTAAATCGACAGACCAGACTAAAATCAAGTAACCAGTAA
ATGACACGGGAGGTGGTGACTTCATGCGTCATAGTTGAACTTTTACTTGT
TCAGTATAAATCGGATAACTTTTTCCTTACAGCGATCAACATTTGCAGAG
ATAACTGGAGGAGGCACTACGTAACACACTGCAGTTTTTTATTCCATAGG
TGATCACTTTTCTAATTATATACAAGTTTATGGTTTTGGTGATAGTCCTG
CCCCACTCACCCACCCATCACAGCAGCCACCAAGTAGTTGTATCGATGAG
GTTAACCCTCCCACAACAGCCATCAACAGTTCCCCATCCTCCTCCTCCTC
CCACTATAGGGTATGGCCGGCGGTGTGCTGCTGGGCGCGCTGGCAGCTGC
GGCAGTGGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig112:106759..110068-

>mRNA_H-akashiwo_Contig112.2.1 ID=mRNA_H-akashiwo_Contig112.2.1|Name=mRNA_H-akashiwo_Contig112.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=258bp|location=Sequence derived from alignment at H-akashiwo_Contig112:106759..110068- (Heterosigma akashiwo CCMP452)
ATGAACCATAAAGACTTTTACCATCCGATTTGTAAAAAAATGGTTGGGAA
AGATCTAGGTGTTGAAGAGAGTCTCTTTATGACGCCCAAGCCACCGGCGA
CCAAGAAGAAGGCAACTCCAACACAGCCGCCTGTGGCCACCGCCATGGCC
GCCGCAGACAACCCCAGAGGGAAGGCAATGGCCGGAGAGTCCAGCAGGAG
CGCCTTGGGTATGGCCGGCGGTGTGCTGCTGGGCGCGCTGGCAGCTGCGG
CAGTGGCC
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