mRNA_H-akashiwo_Contig1116.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1116.5.1
Unique NamemRNA_H-akashiwo_Contig1116.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A6T5NRP6_HETAK (Ribose-5-phosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NRP6_HETAK)

HSP 1 Score: 297 bits (761), Expect = 2.480e-97
Identity = 158/187 (84.49%), Postives = 158/187 (84.49%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 686
            EL DIVAIPTSVRTKEQAESLGIP                  EVDPELNLVKG G    RE    V AKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK
Sbjct:   86 ELKDIVAIPTSVRTKEQAESLGIPLVTLDTHSDLDVAIDGADEVDPELNLVKGRGGALLREKMVEVCAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 272
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A7S0ZKY8_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZKY8_9RHOD)

HSP 1 Score: 255 bits (651), Expect = 2.360e-80
Identity = 131/184 (71.20%), Postives = 145/184 (78.80%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 677
            EL DIVAIPTS+RTKEQAESL IP       P          EVDP+LNLVKG G    RE    V AKKFIVIVDDSK+V+GLGI GAMPVEVTPFCWEHSL+RL   ESL GC A+LRMDG+KPYVTDNDNYI+DLYF+ PIKD  KAA +M+NMVGVVEHGLFL+MTTAVLIAGK+G+EVK
Sbjct:  111 ELKDIVAIPTSIRTKEQAESLNIPLVTLDTHPVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKMVEGLGISGAMPVEVTPFCWEHSLKRLKECESLAGCDAKLRMDGEKPYVTDNDNYIVDLYFETPIKDAEKAAADMINMVGVVEHGLFLNMTTAVLIAGKNGVEVK 294
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A7S1TKQ2_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKQ2_9RHOD)

HSP 1 Score: 254 bits (649), Expect = 3.230e-80
Identity = 134/184 (72.83%), Postives = 145/184 (78.80%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 677
            EL DIVAIPTS+RTKEQAESL IP       P          EVD +LNLVKG G    RE    V AKKFIVIVDDSKLV GLGI GAMPVEVTPFC+EHSL+RL  A SL GC A+LRMDGDKPYVTDNDNYIIDLYFK+PIKD  KAAEEM+NMVGVVEHGLFL+MTTAVLIAGK+G+E+K
Sbjct:   99 ELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPILDVAIDGADEVDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVTGLGISGAMPVEVTPFCYEHSLKRLQEAPSLAGCEAKLRMDGDKPYVTDNDNYIIDLYFKQPIKDANKAAEEMINMVGVVEHGLFLNMTTAVLIAGKNGVEIK 282
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A7S0T664_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T664_9RHOD)

HSP 1 Score: 248 bits (632), Expect = 1.390e-77
Identity = 129/184 (70.11%), Postives = 144/184 (78.26%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 677
            EL DIVAIPTS+RTKEQAESL IP       P          EVD +LNLVKG G    RE    V AKKFIVIVDDSKLV GLG+ GAMPVEVTPFC+EH+L+RL  A SL GC A+LRMDG+KPYVTDNDNYI+DLYF++PI D  KAAEEM+NMVGVVEHGLFLDMTTAVLIAGK+G+E+K
Sbjct:  104 ELKDIVAIPTSIRTKEQAESLDIPLVTLDTHPVLDVAIDGADEVDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVPGLGVSGAMPVEVTPFCYEHTLKRLKDAPSLAGCDAKLRMDGEKPYVTDNDNYIVDLYFEKPIADANKAAEEMINMVGVVEHGLFLDMTTAVLIAGKNGVEMK 287
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BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A5J4YW31_PORPP (Ribose-5-phosphate isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YW31_PORPP)

HSP 1 Score: 239 bits (610), Expect = 2.630e-74
Identity = 127/184 (69.02%), Postives = 139/184 (75.54%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 677
            EL D+VAIPTS+RTKEQAESL IP       P          EVDP LNLVKG G    RE    V+A KFIVIVDDSKLVDGLGI GAMPVEVTPFCWE +L RL  A+SL GC A+LRM   KPYVTDNDNYI+DLYF EPIKD + AA E+ +MVGVVEHGLFLDMTTAVLIAGK+G+EVK
Sbjct:  101 ELKDVVAIPTSLRTKEQAESLNIPLVTLDTHPKLDVAIDGADEVDPALNLVKGRGGALLREKMVEVMADKFIVIVDDSKLVDGLGISGAMPVEVTPFCWEFTLNRLKQAKSLTGCDAKLRMADGKPYVTDNDNYIVDLYFTEPIKDAQAAATEINSMVGVVEHGLFLDMTTAVLIAGKNGVEVK 284
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BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A7S3A473_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A473_9RHOD)

HSP 1 Score: 238 bits (606), Expect = 7.000e-74
Identity = 123/185 (66.49%), Postives = 138/185 (74.59%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKE 680
            EL DIVAIPTS+RTKEQAE L IP       P          E D +LNLVKG G    RE    V AKKFIVIVDDSK V GLG+ GAMPVEVTPFCWE +L +L  A S+ GC A+LRM+GDKPYVTDNDNYI+DLYF+EPIKD   AA+E+L MVGVVEHGLFLDMTTAV++AGKDG+EV E
Sbjct:   88 ELKDIVAIPTSIRTKEQAEGLDIPLVTLDTHPVLDVAIDGADEYDDDLNLVKGRGGALLREKMVEVQAKKFIVIVDDSKKVPGLGVSGAMPVEVTPFCWEFTLNKLKGAASVAGCDAKLRMEGDKPYVTDNDNYIVDLYFEEPIKDANAAAKEILEMVGVVEHGLFLDMTTAVIVAGKDGVEVIE 272
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A2V3J0N4_9FLOR (Ribose-5-phosphate isomerase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0N4_9FLOR)

HSP 1 Score: 235 bits (600), Expect = 1.770e-73
Identity = 122/185 (65.95%), Postives = 141/185 (76.22%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKE 680
            EL+DIVAIPTS+RTKEQAESLGIP       P          EVDP+LNLVKG G    RE    V AKKFIVIVD+SKLVDGLGI GAMPVEVTPFC++ +L RL    S+KGCTA+LRMD DKPYVTDNDNYI+DL+F  PIKD   AA E+ ++VG+VEHGLFL M++AV+IAGKDG+ VKE
Sbjct:   52 ELSDIVAIPTSIRTKEQAESLGIPLVQLDTHPVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVQAKKFIVIVDESKLVDGLGISGAMPVEVTPFCYQFNLDRLLNLPSIKGCTAKLRMDADKPYVTDNDNYIVDLFFDTPIKDAALAASEIRSLVGIVEHGLFLGMSSAVIIAGKDGVYVKE 236
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: A0A6T6DAD6_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DAD6_9RHOD)

HSP 1 Score: 227 bits (578), Expect = 2.510e-69
Identity = 122/185 (65.95%), Postives = 135/185 (72.97%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGD-KPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 677
            EL DIVAIPTS+RTK+QAE L IP       P          EVD ELNLVKG G    RE    V AKKFIVIVDDSKLV GLGI GAMPVE+TPFCW+HSL RL  A +L GCTA+LRMD +  PYVTDNDNYI+DLYF  PIKD + AAEE+ +MVG+VEHGLFLDMTTA +IA   GIEVK
Sbjct:  112 ELKDIVAIPTSIRTKDQAEGLKIPLVTLDTHPILDVAIDGADEVDSELNLVKGRGGALLREKMVEVQAKKFIVIVDDSKLVSGLGISGAMPVEITPFCWQHSLNRLLNAPTLAGCTAKLRMDANGNPYVTDNDNYIVDLYFDTPIKDPKAAAEEINSMVGIVEHGLFLDMTTACIIAKSGGIEVK 296
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BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: D8LDV8_ECTSI (Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV8_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.090e-68
Identity = 118/184 (64.13%), Postives = 131/184 (71.20%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVK 677
            EL DIVAIPTS+RTKEQAESL IP                  EVDP+LNLVKG G    RE    V AKKFIVIVDDSK V GLGI GAMPVEVTPFCWEH+L  +    S+KGC A+LR +  KPYVTDNDNYI+DLYF +PIKD  +A +EML  VGVVEHGLFLDM+ AV+ AG DGI VK
Sbjct:   49 ELKDIVAIPTSIRTKEQAESLDIPLVTLDTHSVLDVAIDGADEVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKGCDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVK 232
[Close]
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Match: K8Z9G7_NANGC (Ribose-5-phosphate isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z9G7_NANGC)

HSP 1 Score: 215 bits (547), Expect = 6.850e-65
Identity = 113/188 (60.11%), Postives = 132/188 (70.21%), Query Frame = 3 
Query:  126 ELTDIVAIPTSVRTKEQAESLGIPWSPWTPTPTWAWPSAAPGEVDPELNLVKGSGAPAAREDGRGVLAKKFIVIVDDSKLVDGLGIDGAMPVEVTPFCWEHSLQRLTAAESLKGC-TAELRMDGDKPYVTDNDNYIIDLYFKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK 686
            EL DIVAIPTS+RTKEQAESLG+P                  EVDP LNLVKG G    RE    V AKKFIVIVDDSK+V GLG+ GAMPVE+TPFC EH+ + +     +KG  T +LRMDGDKPYVTDNDNYI+DLY+ +PI D +  A  +  +VGVVEHG FLDMTTAV++AGK+GIEV   K
Sbjct:   94 ELKDIVAIPTSIRTKEQAESLGVPLVTLDSHSVLDVAIDGADEVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1116.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6T5NRP6_HETAK2.480e-9784.49Ribose-5-phosphate isomerase n=1 Tax=Heterosigma a... [more]
A0A7S0ZKY8_9RHOD2.360e-8071.20Ribose-5-phosphate isomerase n=1 Tax=Timspurckia o... [more]
A0A7S1TKQ2_9RHOD3.230e-8072.83Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A7S0T664_9RHOD1.390e-7770.11Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A5J4YW31_PORPP2.630e-7469.02Ribose-5-phosphate isomerase n=1 Tax=Porphyridium ... [more]
A0A7S3A473_9RHOD7.000e-7466.49Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A2V3J0N4_9FLOR1.770e-7365.95Ribose-5-phosphate isomerase n=1 Tax=Gracilariopsi... [more]
A0A6T6DAD6_9RHOD2.510e-6965.95Ribose-5-phosphate isomerase n=1 Tax=Compsopogon c... [more]
D8LDV8_ECTSI1.090e-6864.13Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus si... [more]
K8Z9G7_NANGC6.850e-6560.11Ribose-5-phosphate isomerase n=3 Tax=Monodopsidace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1116contigH-akashiwo_Contig1116:147523..154623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDV8
Preferred nameRPI2
PFAMsRib_5-P_isom_A
Model size973
Max annot lvl2759|Eukaryota
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
Exons6
Evalue1.9e-39
EggNOG OGsCOG0120@1|root,KOG3075@2759|Eukaryota
EC5.3.1.6
Descriptionribose-5-phosphate isomerase activity
Cds size297
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1116.5.1prot_H-akashiwo_Contig1116.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1116 147807..149923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.7667322-UTR-H-akashiwo_Contig1116:147522..1478061681387086.7667322-UTR-H-akashiwo_Contig1116:147522..147806Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 147523..147806 -
1681387086.8008294-UTR-H-akashiwo_Contig1116:149923..1499971681387086.8008294-UTR-H-akashiwo_Contig1116:149923..149997Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 149924..149997 -
1681387086.8088138-UTR-H-akashiwo_Contig1116:150918..1510151681387086.8088138-UTR-H-akashiwo_Contig1116:150918..151015Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 150919..151015 -
1681387086.8167765-UTR-H-akashiwo_Contig1116:154142..1542691681387086.8167765-UTR-H-akashiwo_Contig1116:154142..154269Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 154143..154269 -
1681387086.8247268-UTR-H-akashiwo_Contig1116:154529..1546231681387086.8247268-UTR-H-akashiwo_Contig1116:154529..154623Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1116 154530..154623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387086.7767713-CDS-H-akashiwo_Contig1116:147806..1479351681387086.7767713-CDS-H-akashiwo_Contig1116:147806..147935Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 147807..147935 -
1681387086.7848167-CDS-H-akashiwo_Contig1116:149202..1492971681387086.7848167-CDS-H-akashiwo_Contig1116:149202..149297Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 149203..149297 -
1681387086.7928157-CDS-H-akashiwo_Contig1116:149850..1499231681387086.7928157-CDS-H-akashiwo_Contig1116:149850..149923Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1116 149851..149923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1116.5.1

>prot_H-akashiwo_Contig1116.5.1 ID=prot_H-akashiwo_Contig1116.5.1|Name=mRNA_H-akashiwo_Contig1116.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=99bp
MPVEVTPFCWEHSLQRLTAAESLKGCTAELRMDGDKPYVTDNDNYIIDLY
FKEPIKDTRKAAEEMLNMVGVVEHGLFLDMTTAVLIAGKDGIEVKEAK*
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mRNA from alignment at H-akashiwo_Contig1116:147523..154623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1116.5.1 ID=mRNA_H-akashiwo_Contig1116.5.1|Name=mRNA_H-akashiwo_Contig1116.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7101bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:147523..154623- (Heterosigma akashiwo CCMP452)
TTGAACTCACAGGTTGGCTACAAGGCCATCGATGACTACGTCACGAGCGG
CATGGTCGTGGGTTTGGGTACAGGATCCACTGCTGCCTTCGCTGGTAAGC
TACTGATAACTTTGCTTGCACTTTTTGGCCTTGCTTTTTGGTAAAAAAAA
TGCTGCAGCCTCCCTAAGTGTCGCCTCAAACACACGTAGTATAGTCGCAT
AGTTATAGTAAATTTTACTACCAGTAGAACTTTTTCCAGTCACAAACAGC
TTTACCAGTAACATTTTGGCTCCAGGTTATTTCAAGATGTAGCTCTAGTA
CTGTTCGCCCTGTAATAAATATTCTTTGGCCTGCCCCCTCCCTGGCGGCG
CCAGTGGAGCGCCTCGGCGAGCTGATGGCCTCCGCGAGCTCACGGACATC
GTGGCCATCCCCACCTCCGTGCGCACCAAGGAGCAGGCGGAGTCCCTCGG
CATCCCCTGGTCACCCTGGACACCCACTCCGGTCTTGGGCGGGCCCGGCC
GTGCCCCTCAGTGTCGCCCACGCACCCCGGGTGCTGTGGCGGGTGAGGGT
GCCTTTCCTTCCATAGAGCAGTTCCAGAGGGTGGTTGCGACTTAAAACCC
TATGGTCAAGCAGCTCTGAAACAACCAGTTGCCCCCGCCAAACGTAACCA
ACCCTAAAACCCTAACCCTAACCCAACCCAAACCCAAGCAATATGGCCAG
TGCCGGGCACGGTGGGTTGCTGCAATTTTCGCTATCATCGATTTCGAGAG
AGACCATGTCGCCCCTTGCATGTTCACCACAGATTAGGCCCTCCCTCGCA
AAAAAGTGAAGTTGAAATTCTTTTTTATCCCTGAAGCAATAGCGGGAACC
ATAAGCGCACTTCACAAAGACCATGCCTCTGGCTGTGTGGTACTGGCACA
CTCTGCTTTCCTCAACCCCTGGCAGATCATGGGTAGGAAACTCAACACAA
TCTAGAACTTCACCTGGGGTAATGCTGAGCCCTTTACTGTTGTTGTAAAG
GGGTAACTTGGAAGCACAGCTCGTAGCGCGTGCACACCTCAAAAGGCACT
TCCCTAATTTCTCAGTGCTCGTCACAGTGCAGCCCTTGTGGTGTTCATGC
AAAAAAGCCGTTAAATACGATGAAGTTGCTGCAATTTTCGCTATCATCGC
TTTTAGAGAGACCAGGTTGCCCCTGTCGTTTACACCACTGATGAGGCCCT
CCCTCGCATCAGTGAAGTTGGAAATCTTTTTTATCCCTGAAGCAATAGCG
GGGACCATAAGCGCACTTCTCAATGGCCATGCCTCTGGCTGTGTGGTACT
GGCACACACTGCTTTCCTCATCCTCATCCCCTGGTAGACCATGGGTAGGA
AAATCAACACAATCTAGAACTTCACAGTTGATCTGTTTCATCCCCTCGGT
CCTGTGATCATAACATACCATGCCACTGCTACAGATATCTGGGGAGAGCC
AAAGAGAGGCATCTGGCGGCACTCAGGTGTGTTTGACATCAACAGAGCAT
GAGGCAGCGCAGTGGCAGCCGGGTTCTGTGGAAAAAAAAAGTGTTCTGGT
AGGCTGATCAGTGGGAACTGCAATTGCACTCCAGCACCACGCTCACTCTT
GCCCATCTTTCTGGACCAGAGGTGCTTCGTGGACACAAATTTGCAGTTCC
CATTGTTCAACATACCAGACCACTTTTCTGCTACACAACCCTTCTGTAGC
TGCGCGTCTCATGCTGTTGGTGGTGTGTAACACACCTGAGTGCCGCCAGA
TGCCCCTCTTTGGCCCTACCCCCGAATTCTGTAGCAGTGGCATGGTCTGT
TGGGATCACAGGACCGAGGGCATAAAACAGATCAACTGCGAAGTTCAGAT
TGCGTTGAGTTTCCTACCCATGCTCTGCCAGGGGCTGGGGCAAGCAGTGT
GTGCGTTGTGCATCAGGGATAAAAGTCAATTTCAACTTCACTGATGCGAG
GGAGGGCCTGCCTGTTCTATGTGGTGTACATATGCAAGGTGTGACAAGGT
CGCTTTTGAAAGCGATGACGGCGAGAATTGCAGTAACTTCGTCGTAGTTA
ATGGTTTTTTTCATGAACACCACAAGGGCTGGCACTGTGGTGAGCGCTGG
GTAATGAGGGAAGTGCCTTATTTAAGGTGCACGCACGAGCTATGCTTCCA
ATTTACTCCTTTACAACTTAAAGGGGCTCAGCATAACCCCAGGTGCAGTA
CTGAGGCCTCCATCAACCACGCCCGGCGCGGCGCGTCTTAGACTTAGCTG
TGTGCGTGGAGCCATTCCGTCAGCACCATCAATATCGCGTGGAGCATTAA
ATGTAGTTCTTAGTGCAGCAGACCTGGTGAATCAAAAGAAGCTAGGTGCG
GACTTTTTTGAGCCTAGGCCAGGAAGAAGAGGACTGCAAGTTGTCCACTG
AATGAAGCACTGCGAGCAGGCCAGGACCAACAAGATGCTGTTTGGCTATA
CCACGCGCCACATACCAGCTGCTGTTCCTCCCTGAACACAAAGGATGTAC
GCTAATGCTGCAATACCTGGGCCAGCTGAGGTCCAGGAAAGGATGAACAC
TGATGCATGTACGCTAGTGTATACTGCAGCAGTGGAAGGAGGTCGAGGCA
ATGCCTGACACTGCCGCCTTTTCTGCCTTCTCATCAGCAACAGAGAACAG
ATGATGGTCAGAACAAGAATAGCGCTGTCCGACAGACATGATTGACAGTA
CTTCAGATTTTGGTCCTCTCCTGTACAAAGGACATTGATAAACAAAAGCC
TCTCTCATCGAAGATGTGCGTCCCTCGGAAATTGAAGGCTGGCTGGGACT
TACTTTCGTCATACTTTTACTAGTAACAGCTTCTAGTTTCTGCTCTGCTG
TGTGCCTGGGCAACAACAACAAGATCAAGTCGCACCACCCATGTCAAGTT
GAACGTATGCATCACAGGGGGAAAATGGAGTTGGTGGGGCTGTTATAGTT
GGGGGGTGGTCTTCTGGAAGTTGGTGGGGTGTGAGCGTGTGATCCAAAGT
ACAAGTTAGGGGAAGAGGCGCAGGTGATCTGGAGTACCAGGTGGAGGGAG
AGTGAGTGGGTGATATGGAGCATGAGGTGGTGGAGGGGTGGTGGCATTCG
GTGGTGTGGACCATTGCGTTGATGCCGGGTGGTTTGCCCTACCAACTGCA
GCTGAGTCGGGGTTTGGGCCCACTTGGAGTCAGGAGTAAGGAAAAAAGGC
ATGGTGTGTTTGCGAGCGCAGGGGTGGTGGGTGGTGCTCGAGTGATCTGG
AGCACATGGGTGGTTCGAGGCTGAGCGGGTTATCCAGAGCACGAGGGAAA
ATAAAGGGCGCGAGTGATCCAGGGCACGAGGTGGAGGGGGCGTGTTAGCG
GGTGCTCTGCCAGAGCACCCGCATTTCCAGCCCGGGACCGGGGTGGGTGC
AGTGTGGGACGGAAAAAACGGGTGCTCCGGAACGCGCGGCCATTTCATTC
GTGCTATATCATCCCCACCGCCCCCAGCGCCGTGATCTGTGAACCGCTCC
TGCCTCGAACACGGCGCCCCGCCGCGCGCCGCTCGGCCCGTCCCCACCCA
CCGCCCGCCCTCCCCGGCGACCACCACCCGCGCCGCCCGCCCCCCCCCCC
GCCCCCAGACCTGGGCGTGGCCATCGGCGGCGCCCGGCGAGGTGGACCCC
GAGCTGAACCTGGTGAAGGGCAGCGGCGCCCCTGCTGCGCGAGAAGATGG
TCGAGGTGGGCGGGTCCCCCAGCAGGTGTGTGTGAGGGTATGGATGGACA
AGGGGCAGCAGGTGTGAAGCGCGCGGCGCCTGGTTGTCACGGAGCGCGCC
GCGAGAGAGGGAAGGGCACGGGCAGGGTGGAGCCGTCTTGTCGAGTCGAG
GGGAGCTCGCTGTGAGAAGGATGCAAAGAAGAGCAGGCGCAGAGTCACGA
AGCCTCTTCATTAGCTTGTGGTGAGATGGCTAATGGCATGAACAGACGGA
CTGAGGATTGGCCTGTGCCCGAACAAGTTCTTCCCTTTACTAGTATACAC
GCTGAAGAAACAAGAAAAACTTGGTGCTACATATCATCACACCCGGTGGT
TGTTCAATGACTTGCATTTTTCAACAACTGTACAGAGGGGACTTTTGGCT
CCTTGCATTTTTTTCTGAGATGAGCGGTTGAAGCCGCAGCATAAATTGAG
AAGTCTTTAGCTTCAGTCTATTTGAAAATTTTGGGACTGGCCCCCGGCAT
ATCCGCCAACAAGCTATGAACTACCTGGTCAGCTGCCACCAACGGGGTGG
TTCCTGCACTTCTTCAGCGGGCCTGGCGCCCTGTGCGCAATGAACCCAAC
CCTCATTGGGCTGCTCGGGAGCACTCATAGTGCTCATGAAGAAAAATCAC
AAGTGCGGGGTTTGTGCTTGGCGAATCCCGTGGTATAACTCTGGCAGGAC
GATTCCAAGCCTGAAGAAGGGCTCTCAACTAACTGTGCTCTCAACTAACT
GTACACTTGTATGGTCGAGGTTTGTTGTTATTGTCACGTCATCACTGCCT
CAATTGAAAGAACAAAACACTCTATCAGGGCCAGTACAGACAGCTATTTA
GAGCCCGAAGTCCAAAACAATCTCTTGAACATCACGTCTTGCGGCCCCCT
TCCGTTCTCTTTTGGCCCCCCCTCAGGTGTGCTTGCCAAGAAGTTCATTG
TGATCGTGGACGACTCCAAGCTGGTGGACGGGCTGGGCATCGACGGGGCC
ATGCCCGTGGAGGTCACCCCTTTCTGCTGGGAGCACTCGCTGCAGCGCCT
CACCGCCGCCGAGTCCCTCAAGGGTATAGAAACAAAAGACCCCCTCGAGC
CACTCGAGGTTGAAGAAAGCCCCCTCCACCCGTCGTTGAGGACAGCTGCG
GTCTTGTACAAGGTGCTGCTGTGCCTTCACCCCCGTTCAGCACCTCAAGT
CAAAGCCCCATCTTGAGTCTAGATGTGTTCTTGTGTATATGTAATTCGGT
GTGTGCCCCCCCCCACTCCTCCTGATGTGTGTGCTGGTATGTTACAAACT
GGTCCTCTGCGAAAGGTATTCATTCCCTTCCCTTCGCAATGCTACTCCGT
ATAGTGCTGCCTGACCTGGCCCTTCTCCGCTACTGCCTGTTGGGGGTCCC
AGCAAAGGTCCCAGCAGAGTGCTACTGCTCTCCACCACCCTTTCGTACTT
TGTACCATTTGATCGCAGCAGCCTTTCGCAAAATTATTTATGATCTTCTT
CTGTTTCATCCTCTGCACCTCCTGCACTGCTCCATGTGAACCACATTTTT
TTTCACAACAACAGCAAACGCAGCGCTACTACATAGATAATATTACCGGC
CCCCTGTTTCGACCCCTCACCCCCAGGGTGCACTGCCGAGCTCCGCATGG
ACGGCGACAAGCCCTACGTGACCGACAATGACAACTACATCATCGACCTG
TACTTCAAGGAGCCCATCAAGGTATCGAAACCAATTGAGGAAAGGGGGGC
GGGGGCGTGCCTGGAAGAAGGGGGCGGCGACTTCTGCCTTACCTGAGGCC
GGGGAGGAAGGGGGCGTGGGGGGGGGATGGTCGGGCAGTTGAGCTGCCTC
AGCGTTGCCTGGTGGGGCCAGGGGGGGAAGGGAAGAGGGGGAGGGGGGAT
GGTCGGGCATTTCAGAGGGAGGGAGAGGAAAGGGAGGGTGCTCGACAATT
GTAAATGAGGGTAAAGGGGAAAGAACAAGTTGTGCGAGTGGGTTGGTTGG
TCATGATCCGGAGAAGGAGGTATATATTATATAGAAGAATATGCAGTGAA
TAATAGTTCAATGGTCACACAGTATGGATGTCAAAACTGGGTCAGTAGAA
AGCAGCACTGTGGCTGTGGCTGGCGAGTGGTATCTCAGCAATAATACAAA
TATGGTCATGCTCACAAACCCAACAATGCCGCTAAAGTCCATTATTATAC
ATATCATGTACGAAGCAGAGATCATACACAGTGCGCTAGCATGGATATAT
GTTGTGCACTCAAAGGTGTAAAATATGCTTTGTTTAATGAATCTGTGTGC
CCAGATCTTAAGCTAACACCGTCTGTGTGTCAGTTTCAAAATGGGGCAAG
AGCTAGTTTTGAAACTGTGGTGCAACCTTTTCTTTCATCAACCTCTTGCC
AGTTCACTGGAGTAGAGTCGTTTAGAGTATCCAATTGTACCTTAGGGTGA
CTGGGGATACACAGAGTGCGCAGAGGCTTAGCGGGGATACACAGAGTGCG
CAGAGGCTTAGCAGCTGGGGAACACTTCATCCCTCTCCAGGCCTCCTGGA
TGGAGGCGTCTCCAATCTGCCCACATTTGCAGCCTTCCCTCTCCTCTCTC
TTTATAGCCAGGAAATTTGCAGAGGGGGCCGAAGTCTTGTACTACAGCTG
AGCGAGTCCTTTGAATCTCTAAACACCCACCCAAACCAAAGCTGGCAATG
TCTGTTACATATACCGCAATACCACATACATGGAGCCTGGCAGATAAGAC
AGGCAGAGGCTGTAACATAAGTCTACTAAGTAGTAGATAATGCCAGAAGT
GAAAGAGTCCCTTCCCTGTATGGAGGCCGGGGCTTCGGTCCTTGTATAGT
TATCAAAAAGGCTGGACCTTGAATAGATTATAGCATAATCATCATTATCA
TGAGTCTACATAGATACGAGTTGCCAAACTCTCATCATGGCCAACAAATT
GCCCCCTTTTTTTGTACCATTGCGAACAAACTGCACAGGACACCCGGAAG
GCTGCTGAGGAGATGCTGAACATGGTGGGCGTCGTCGAGCACGGGCTTTT
CCTCGACATGACCACCGCCGTTCTGATTGCGGGCAAGGACGGCATCGAGG
TCAAAGAGGCAAAGTAAGCGCGGTCAGACCGGCCAACCTGCTGCTGCCCC
GGTGCAAGGGCAGCCAGGGGCTGTGGGTGTGCAGATGCTGGATGGTGATG
CGAACAGCTAGCCTCTTGGTCTTTCATCTTGGACATCGAATTGGTGTATC
ATTGGCTACCTGCATGATGTAGGACATGGAGCAGCAGTGGTGGCATTACA
CTGCACTGTTTTTTGTCAAAACAAGCAGGAACAACTATTGTACTGCCACT
GCAGCCGGCTGGATGGATGGTGATGCAGTGCCTGTTGTGTGCCTTGACGT
T
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1116:147523..154623-

>mRNA_H-akashiwo_Contig1116.5.1 ID=mRNA_H-akashiwo_Contig1116.5.1|Name=mRNA_H-akashiwo_Contig1116.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=297bp|location=Sequence derived from alignment at H-akashiwo_Contig1116:147523..154623- (Heterosigma akashiwo CCMP452)
ATGCCCGTGGAGGTCACCCCTTTCTGCTGGGAGCACTCGCTGCAGCGCCT
CACCGCCGCCGAGTCCCTCAAGGGGTGCACTGCCGAGCTCCGCATGGACG
GCGACAAGCCCTACGTGACCGACAATGACAACTACATCATCGACCTGTAC
TTCAAGGAGCCCATCAAGGACACCCGGAAGGCTGCTGAGGAGATGCTGAA
CATGGTGGGCGTCGTCGAGCACGGGCTTTTCCTCGACATGACCACCGCCG
TTCTGATTGCGGGCAAGGACGGCATCGAGGTCAAAGAGGCAAAGTAA
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