mRNA_H-akashiwo_Contig1113.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1113.1.1
Unique NamemRNA_H-akashiwo_Contig1113.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: D7FLE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLE7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 1.220e-52
Identity = 91/147 (61.90%), Postives = 112/147 (76.19%), Query Frame = 1
Query:    4 PSLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAYG 444
            P L   LVQDN+PA++   L+IGSIHA FNQ+ + D  ITH+LNASG+PATFP  +TYFTV +RDKE +NIL  + A NIF+EAG+   G VLVHC GGRSRSA   +AF+MS++  +Y+ A   VR ARPVASVNRGFE+QLRAYG
Sbjct:    8 PPLSRSLVQDNVPAKVTDRLWIGSIHAAFNQDSMQDRGITHVLNASGLPATFPRQFTYFTVDIRDKESSNILTAIGAVNIFVEAGIEK-GGVLVHCAGGRSRSAAFVVAFIMSTQGCSYDAAYAQVRRARPVASVNRGFEQQLRAYG 153          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A836CLF0_9STRA (Protein-tyrosine phosphatase-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLF0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.530e-50
Identity = 81/143 (56.64%), Postives = 107/143 (74.83%), Query Frame = 1
Query:   28 QDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAYGMMSY 456
            QDNLPA+++  ++IGSIHA FNQ+GL    ITH+LNASG+PATFP S+TYF V +RDKE+A+IL  + A+++FIEAG    G VLVHC GGRSRSA    A+LM  +  T++ A++ ++ ARPV ++NRGFE QLRAY    Y
Sbjct:    1 QDNLPAKVVDRVYIGSIHAAFNQDGLLARGITHVLNASGLPATFPRSFTYFNVDLRDKEEADILGALGAASVFIEAGTEK-GGVLVHCAGGRSRSAAFIAAYLMMKQDFTFDQAVEQLKAARPVVAINRGFELQLRAYEATGY 142          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A835Z9L3_9STRA (MAP kinase phosphatase with leucine-rich repeats protein 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L3_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.660e-49
Identity = 78/145 (53.79%), Postives = 109/145 (75.17%), Query Frame = 1
Query:    7 SLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAY 441
            SL + LVQDN PA+++  ++IGSIHA FNQ+GL    ITH+LNASG+PATFP ++TYF V +RD+E A IL  + A+ +FI+AG+   G VLVHC GGRSRSA +   +LM+  + T++ AL+ +R  RPV ++N+GFE+QLRA+
Sbjct:    8 SLKSELVQDNAPARVVANVYIGSIHAAFNQDGLAQRGITHVLNASGLPATFPRAFTYFNVDIRDREDAAILGALGATAVFIDAGVEK-GGVLVHCAGGRSRSAAIIAGYLMAKHAYTFDRALEALRVVRPVVAINKGFEQQLRAF 151          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A6G0WNR0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNR0_9STRA)

HSP 1 Score: 171 bits (434), Expect = 2.220e-48
Identity = 78/144 (54.17%), Postives = 110/144 (76.39%), Query Frame = 1
Query:    4 PSLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLR 435
            PSL + LVQDN+P ++IP L+IGSIHA FN E L++ KI+H+LN S   AT+P ++TY TV +RDK+  N+L+C+P +++FIEAG++  G +LVHC GGRSRS  + +A+LM +  ++Y DAL  VR ARPV ++N GFE+QLR
Sbjct:   17 PSLQSSLVQDNVPCEVIPKLWIGSIHAAFNLEALHERKISHVLNVSSTVATYPQAFTYLTVDIRDKDYTNLLSCIPITSVFIEAGINQ-GGILVHCAGGRSRSPAIVMAYLMLTMGLSYEDALTKVRTARPVVALNSGFEDQLR 159          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A7S2RFR6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFR6_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.680e-48
Identity = 79/146 (54.11%), Postives = 109/146 (74.66%), Query Frame = 1
Query:   10 LDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAG--MSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAY 441
            L+  +V+D LP +++PGLFIGSIH  FN+  L    ITHI+NA+G+P TFP+ ++Y T+++RDKE ANIL+C+ ASN FI +   +S   NVLVHC  GRSRSA L +AFLMS ++++Y+ A  +V+  RPV S+N GFE+QLRAY
Sbjct:   22 LNRSIVRDELPVEVVPGLFIGSIHCAFNEAALRGAGITHIVNAAGLPPTFPHLFSYLTINIRDKENANILSCIAASNKFIGSADHLSKTKNVLVHCSFGRSRSAALIVAFLMSFKNLSYSLAHSIVKKQRPVISINPGFEQQLRAY 167          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A485LIB3_9STRA (Aste57867_21739 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIB3_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.010e-47
Identity = 80/145 (55.17%), Postives = 106/145 (73.10%), Query Frame = 1
Query:    7 SLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAY 441
            +L   LVQDN+P ++IP L+IGSIH+ FN E + + KI+H+LN SG  AT+P  +TY TV +RDKE  NIL+CVP + +F+E GM   G VLVHC GGRSRS  + IA +MS+  ++Y+DAL  VR ARPV S+N GFE+QLR +
Sbjct:   14 ALQPSLVQDNIPCEVIPKLWIGSIHSAFNFEAIKERKISHVLNVSGTVATYPQEFTYLTVDLRDKEYTNILSCVPITTVFLETGMQQ-GGVLVHCAGGRSRSPAIAIAHIMSTLGLSYDDALTKVRTARPVVSLNTGFEDQLRCF 157          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A1V9ZRS5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRS5_9STRA)

HSP 1 Score: 172 bits (436), Expect = 5.350e-47
Identity = 78/145 (53.79%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    7 SLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAY 441
            +L   LVQDNLP++++P L++GSIHA FN E + + KITH+LN SG  AT+P  +TY  + VRDKE  NIL+C+P + +F+EAGM  +G VLVHC GGRSRS  + IA++MS+   +Y+DAL  +R+ RPV S+N GFEEQL+ +
Sbjct:  394 ALQPSLVQDNLPSEVVPKLWVGSIHAAFNFEAIKERKITHVLNVSGTVATYPQDFTYLAIDVRDKEYTNILSCIPVATVFLEAGMQ-NGGVLVHCAGGRSRSPAIAIAYIMSTLGFSYDDALAKLRSIRPVVSLNSGFEEQLQCF 537          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A0A7CLY8_9STRA (Secreted protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A0A7CLY8_9STRA)

HSP 1 Score: 172 bits (436), Expect = 7.190e-47
Identity = 78/145 (53.79%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    7 SLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAY 441
            +L   LVQDNLP++++P L++GSIHA FN E + + KITH+LN SG  AT+P  +TY  + VRDKE  NIL+C+P + +F+EAGM  +G VLVHC GGRSRS  + IA++MS+   +Y+DAL  +R+ RPV S+N GFEEQL+ +
Sbjct:  435 ALQPSLVQDNLPSEVVPKLWVGSIHAAFNFEAIKERKITHVLNVSGTVATYPQDFTYLAIDVRDKEYTNILSCIPVATVFLEAGMQ-NGGVLVHCAGGRSRSPAIAIAYIMSTLGFSYDDALAKLRSIRPVVSLNSGFEEQLQCF 578          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: W4G0P6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0P6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.510e-46
Identity = 76/145 (52.41%), Postives = 108/145 (74.48%), Query Frame = 1
Query:    7 SLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAY 441
            +L   LVQDNLP +++P L++GS+HA FN E + + KI+H+LN SG  AT+P  +TY TV +RDK+  N+L+CVP + +F+E+GM   G VLVHC GGRSRS  + +A+LMS+   ++++AL  VR ARPVAS+N GFE+QLR +
Sbjct:   27 ALQPSLVQDNLPCEVVPKLWVGSVHAAFNFEAIKERKISHVLNVSGTVATYPQEFTYLTVDIRDKDYTNLLSCVPIATVFLESGMQ-HGGVLVHCAGGRSRSPAIVVAYLMSTLGTSFDEALIKVRTARPVASLNSGFEDQLRCF 170          
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Match: A0A7S2W1B1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1B1_9STRA)

HSP 1 Score: 155 bits (393), Expect = 3.310e-46
Identity = 75/124 (60.48%), Postives = 95/124 (76.61%), Query Frame = 1
Query:   10 LDTGLVQDNLPAQI--IPGLFIGSIHAGFNQEGLNDLKITHILNASGMPATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGGRSRSAGLCIAFLMSSRSMTYNDALQ 375
            L T LVQDN+PAQI   P +FIGSIHA FN + L ++ ITHILNASG+PATFP ++ Y T+ +RDK  ANIL C+PA+NIFIEAG+   G+VLVHC GGRSRSA    AFLMS++ ++ + AL+
Sbjct:    8 LSTSLVQDNIPAQISECPRVFIGSIHAAFNVDKLREIGITHILNASGLPATFPRAFNYLTIELRDKNHANILGCIPAANIFIEAGLDQGGSVLVHCAGGRSRSAAFITAFLMSTQGLSLDRALR 131          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1113.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLE7_ECTSI1.220e-5261.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CLF0_9STRA1.530e-5056.64Protein-tyrosine phosphatase-like protein (Fragmen... [more]
A0A835Z9L3_9STRA1.660e-4953.79MAP kinase phosphatase with leucine-rich repeats p... [more]
A0A6G0WNR0_9STRA2.220e-4854.17Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S2RFR6_9STRA6.680e-4854.11Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A485LIB3_9STRA1.010e-4755.17Aste57867_21739 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZRS5_9STRA5.350e-4753.79Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A0A7CLY8_9STRA7.190e-4753.79Secreted protein n=1 Tax=Thraustotheca clavata Tax... [more]
W4G0P6_9STRA1.510e-4652.41Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A7S2W1B1_9STRA3.310e-4660.48Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1113contigH-akashiwo_Contig1113:249974..250429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLE7
PFAMsDSPc
Model size457
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2e-53
EggNOG OGsCOG2453@1|root,KOG1716@2759|Eukaryota
Descriptionprotein tyrosine/serine/threonine phosphatase activity
Cds size456
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.8911276-CDS-H-akashiwo_Contig1113:249973..2504291681387085.8911276-CDS-H-akashiwo_Contig1113:249973..250429Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1113 249974..250429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1113.1.1prot_H-akashiwo_Contig1113.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1113 249974..250429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1113.1.1

>prot_H-akashiwo_Contig1113.1.1 ID=prot_H-akashiwo_Contig1113.1.1|Name=mRNA_H-akashiwo_Contig1113.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=152bp
MPSLDTGLVQDNLPAQIIPGLFIGSIHAGFNQEGLNDLKITHILNASGMP
ATFPNSYTYFTVSVRDKEQANILNCVPASNIFIEAGMSMDGNVLVHCFGG
RSRSAGLCIAFLMSSRSMTYNDALQMVRNARPVASVNRGFEEQLRAYGMM
SY
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mRNA from alignment at H-akashiwo_Contig1113:249974..250429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1113.1.1 ID=mRNA_H-akashiwo_Contig1113.1.1|Name=mRNA_H-akashiwo_Contig1113.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1113:249974..250429+ (Heterosigma akashiwo CCMP452)
ATGCCCTCCTTGGACACAGGGCTTGTTCAGGATAATCTTCCAGCCCAGAT TATCCCCGGCCTTTTTATTGGGTCGATCCATGCCGGCTTCAACCAGGAAG GGCTCAACGACCTGAAAATAACTCATATTTTGAACGCTTCTGGGATGCCT GCTACCTTTCCTAATTCTTACACCTACTTCACCGTTTCTGTTCGAGATAA GGAACAGGCCAATATCCTGAACTGCGTTCCAGCTTCTAATATTTTTATAG AAGCTGGTATGTCTATGGATGGGAATGTTTTGGTGCATTGCTTTGGTGGA AGGTCGAGATCTGCAGGTCTATGCATTGCATTTCTGATGTCAAGTCGATC AATGACCTACAATGATGCACTCCAGATGGTCCGCAACGCCCGACCGGTTG CATCCGTTAATCGGGGATTTGAGGAACAACTGCGCGCCTATGGAATGATG AGCTAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1113:249974..250429+

>mRNA_H-akashiwo_Contig1113.1.1 ID=mRNA_H-akashiwo_Contig1113.1.1|Name=mRNA_H-akashiwo_Contig1113.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=456bp|location=Sequence derived from alignment at H-akashiwo_Contig1113:249974..250429+ (Heterosigma akashiwo CCMP452)
ATGCCCTCCTTGGACACAGGGCTTGTTCAGGATAATCTTCCAGCCCAGAT
TATCCCCGGCCTTTTTATTGGGTCGATCCATGCCGGCTTCAACCAGGAAG
GGCTCAACGACCTGAAAATAACTCATATTTTGAACGCTTCTGGGATGCCT
GCTACCTTTCCTAATTCTTACACCTACTTCACCGTTTCTGTTCGAGATAA
GGAACAGGCCAATATCCTGAACTGCGTTCCAGCTTCTAATATTTTTATAG
AAGCTGGTATGTCTATGGATGGGAATGTTTTGGTGCATTGCTTTGGTGGA
AGGTCGAGATCTGCAGGTCTATGCATTGCATTTCTGATGTCAAGTCGATC
AATGACCTACAATGATGCACTCCAGATGGTCCGCAACGCCCGACCGGTTG
CATCCGTTAATCGGGGATTTGAGGAACAACTGCGCGCCTATGGAATGATG
AGCTAT
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