mRNA_H-akashiwo_Contig110.37.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig110.37.1
Unique NamemRNA_H-akashiwo_Contig110.37.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A6V1P7M0_HETAK (Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7M0_HETAK)

HSP 1 Score: 226 bits (576), Expect = 2.150e-74
Identity = 115/119 (96.64%), Postives = 118/119 (99.16%), Query Frame = 1
Query:    1 MAGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAKT 357
            MAGKAGRGKKSQT+SSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYL+AV+EYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKK KT
Sbjct:   27 MAGKAGRGKKSQTRSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKTKT 145          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A7S3UYM8_HETAK (Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UYM8_HETAK)

HSP 1 Score: 210 bits (535), Expect = 6.250e-68
Identity = 106/116 (91.38%), Postives = 112/116 (96.55%), Query Frame = 1
Query:    4 AGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            A   GRGKKSQ+KSSKAGLQFPVGRIGRYLK GRYSARVGAGAPVYL+AV+EYLCAEILELAGNAARDNKKTRI+PRHLQLAVRNDEELNKLLGGVTI+QGGVLPNIHTVLLPKK+
Sbjct:   34 AAAGGRGKKSQSKSSKAGLQFPVGRIGRYLKNGRYSARVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTISQGGVLPNIHTVLLPKKS 149          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A7S2GRL8_9STRA (Histone H2A n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRL8_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.120e-62
Identity = 97/115 (84.35%), Postives = 108/115 (93.91%), Query Frame = 1
Query:    7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRGKKS T S+KAGLQFPVGRIGRYLKQG+++ R+GAGAPVYL+AV+EYLCAEILELAGNAARDNKK+RI PRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH+VLLPKKA
Sbjct:    5 GKGGRGKKSTTSSAKAGLQFPVGRIGRYLKQGKFATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIAPRHITLAVKNDEELNKLLGGVTIAGGGVLPNIHSVLLPKKA 119          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A7S2V3S5_9STRA (Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3S5_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.860e-62
Identity = 95/110 (86.36%), Postives = 106/110 (96.36%), Query Frame = 1
Query:   25 KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAK 354
            KKS TKS+KAGLQFPVGRIGR+LK+GRY+ RVGAGAPVY++AV+EYLCAEILELAGNAARDNKK+RI+PRHLQLA+RNDEELNKLLGGVTI+QGGVLPNIH VLLPKK K
Sbjct:    7 KKSVTKSTKAGLQFPVGRIGRFLKKGRYAPRVGAGAPVYMAAVLEYLCAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGGVTISQGGVLPNIHAVLLPKKTK 116          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A7R9YCM0_9STRA (Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCM0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.120e-61
Identity = 94/110 (85.45%), Postives = 105/110 (95.45%), Query Frame = 1
Query:   28 KSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAKT 357
            KS T+SSKAGLQFPVGR+GRYLKQGRY  R+G+GAPVYL+AV+EYLCAEILELAGNAARDNKK+RI+PRH+QLAVRNDEELNKLLG VTIAQGGVLPNIH VLLPKK+K+
Sbjct:   22 KSMTRSSKAGLQFPVGRVGRYLKQGRYCDRIGSGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIIPRHVQLAVRNDEELNKLLGNVTIAQGGVLPNIHNVLLPKKSKS 131          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A6U2JFS4_9STRA (Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 RepID=A0A6U2JFS4_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.790e-61
Identity = 97/116 (83.62%), Postives = 108/116 (93.10%), Query Frame = 1
Query:    7 GKAGRG-KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRG KKS T S+KAGLQFPVGRIGRYL+QG+Y+ R+GAGAPVYL+AV+EYLCAEILELAGNAARDNKK+RIVPRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH VLLPKK+
Sbjct:    5 GKGGRGGKKSTTSSAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIASGGVLPNIHAVLLPKKS 120          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: D7FWI9_ECTSI (Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7FWI9_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.550e-61
Identity = 94/114 (82.46%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKK 348
            GK GRGKKS T+S+KAGLQFPVGR+GR+LK+G+Y++RVGAGAPVYL+AV+EYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKK
Sbjct:    5 GKGGRGKKSTTRSAKAGLQFPVGRVGRFLKKGKYASRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKK 118          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A6H5KG79_9PHAE (Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG79_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 2.730e-61
Identity = 96/115 (83.48%), Postives = 106/115 (92.17%), Query Frame = 1
Query:    7 GKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKA 351
            GK GRGKKS +KSSKAGLQFPV RIGRYLK+G+Y+ RVGAGAPVYL+AV+EYL AE+LELAGNAARDNKK RI+PRH+QLAVRNDEELNKLLG VTIA GGVLPNIH VLLPKK+
Sbjct:    5 GKGGRGKKSTSKSSKAGLQFPVARIGRYLKRGKYATRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKARIIPRHIQLAVRNDEELNKLLGEVTIASGGVLPNIHAVLLPKKS 119          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: B7FWQ2_PHATC (Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 RepID=B7FWQ2_PHATC)

HSP 1 Score: 192 bits (488), Expect = 2.900e-61
Identity = 97/119 (81.51%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    7 GKAGRG-KKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAKTT 360
            GK GRG KKS T S+KAGLQFPVGRIGRYL+QG+Y+ R+GAGAPVYL+AV+EYLCAEILELAGNAARDNKK+RIVPRH+ LAV+NDEELNKLLGGVTIA GGVLPNIH +LLPKK+  T
Sbjct:    7 GKGGRGDKKSTTASAKAGLQFPVGRIGRYLRQGKYATRMGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRIVPRHITLAVKNDEELNKLLGGVTIAAGGVLPNIHAILLPKKSGPT 125          
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Match: A0A7S0S3G4_9CHLO (Histone H2A n=2 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S3G4_9CHLO)

HSP 1 Score: 192 bits (489), Expect = 3.010e-61
Identity = 93/115 (80.87%), Postives = 109/115 (94.78%), Query Frame = 1
Query:   10 KAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSAVMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIHTVLLPKKAK 354
            K G GKK+Q++S+KAGLQFPVGRI RYLK+G+Y+ R+GAGAPVYL+AV+EYLCAE+LELAGNAARDNKKTRIVPRH+QLA+RNDEEL+KLLG VTIA GGVLPNIH+VLLPKK+K
Sbjct:   16 KGGSGKKAQSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLCAEVLELAGNAARDNKKTRIVPRHIQLAIRNDEELSKLLGEVTIASGGVLPNIHSVLLPKKSK 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig110.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P7M0_HETAK2.150e-7496.64Histone H2A n=2 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A7S3UYM8_HETAK6.250e-6891.38Histone H2A n=1 Tax=Heterosigma akashiwo TaxID=282... [more]
A0A7S2GRL8_9STRA1.120e-6284.35Histone H2A n=1 Tax=Helicotheca tamesis TaxID=3740... [more]
A0A7S2V3S5_9STRA1.860e-6286.36Histone H2A n=1 Tax=Fibrocapsa japonica TaxID=9461... [more]
A0A7R9YCM0_9STRA1.120e-6185.45Histone H2A n=1 Tax=Pinguiococcus pyrenoidosus Tax... [more]
A0A6U2JFS4_9STRA1.790e-6183.62Histone H2A n=6 Tax=Bacillariophyta TaxID=2836 Rep... [more]
D7FWI9_ECTSI2.550e-6182.46Histone H2A n=6 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6H5KG79_9PHAE2.730e-6183.48Histone H2A n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
B7FWQ2_PHATC2.900e-6181.51Histone H2A n=9 Tax=Bacillariophyta TaxID=2836 Rep... [more]
A0A7S0S3G4_9CHLO3.010e-6180.87Histone H2A n=2 Tax=Chlamydomonas leiostraca TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig110contigH-akashiwo_Contig110:1413671..1414033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps19793
PFAMsHistone,Histone_H2A_C
Model size363
Max annot lvl2836|Bacillariophyta
KEGG koko:K11251
KEGG Pathwayko04217,ko05034,ko05322,map04217,map05034,map05322
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.95e-63
EggNOG OGsCOG5262@1|root,KOG1756@2759|Eukaryota,2XCAY@2836|Bacillariophyta
DescriptionHistone H2A
Cds size363
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387082.239482-CDS-H-akashiwo_Contig110:1413670..14140331681387082.239482-CDS-H-akashiwo_Contig110:1413670..1414033Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig110 1413671..1414033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig110.37.1prot_H-akashiwo_Contig110.37.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig110 1413671..1414033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig110.37.1

>prot_H-akashiwo_Contig110.37.1 ID=prot_H-akashiwo_Contig110.37.1|Name=mRNA_H-akashiwo_Contig110.37.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=121bp
MAGKAGRGKKSQTKSSKAGLQFPVGRIGRYLKQGRYSARVGAGAPVYLSA
VMEYLCAEILELAGNAARDNKKTRIVPRHLQLAVRNDEELNKLLGGVTIA
QGGVLPNIHTVLLPKKAKTT*
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mRNA from alignment at H-akashiwo_Contig110:1413671..1414033+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig110.37.1 ID=mRNA_H-akashiwo_Contig110.37.1|Name=mRNA_H-akashiwo_Contig110.37.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1413671..1414033+ (Heterosigma akashiwo CCMP452)
ATGGCCGGAAAAGCTGGACGCGGAAAGAAGTCTCAGACCAAGAGCTCTAA GGCTGGTCTTCAGTTCCCTGTGGGCCGTATCGGCCGCTATCTGAAGCAGG GCCGCTACTCTGCTCGTGTGGGTGCTGGTGCCCCTGTGTACCTCTCCGCC GTGATGGAGTACCTATGCGCTGAGATTCTTGAACTCGCTGGAAACGCCGC CCGCGATAACAAGAAGACCAGAATTGTCCCTCGTCACCTGCAGCTCGCCG TCAGAAACGACGAGGAGCTGAACAAGCTTCTAGGTGGTGTGACCATCGCC CAGGGTGGTGTGCTGCCCAACATCCACACCGTCCTTCTCCCCAAGAAGGC CAAGACTACTTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig110:1413671..1414033+

>mRNA_H-akashiwo_Contig110.37.1 ID=mRNA_H-akashiwo_Contig110.37.1|Name=mRNA_H-akashiwo_Contig110.37.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig110:1413671..1414033+ (Heterosigma akashiwo CCMP452)
ATGGCCGGAAAAGCTGGACGCGGAAAGAAGTCTCAGACCAAGAGCTCTAA
GGCTGGTCTTCAGTTCCCTGTGGGCCGTATCGGCCGCTATCTGAAGCAGG
GCCGCTACTCTGCTCGTGTGGGTGCTGGTGCCCCTGTGTACCTCTCCGCC
GTGATGGAGTACCTATGCGCTGAGATTCTTGAACTCGCTGGAAACGCCGC
CCGCGATAACAAGAAGACCAGAATTGTCCCTCGTCACCTGCAGCTCGCCG
TCAGAAACGACGAGGAGCTGAACAAGCTTCTAGGTGGTGTGACCATCGCC
CAGGGTGGTGTGCTGCCCAACATCCACACCGTCCTTCTCCCCAAGAAGGC
CAAGACTACTTAA
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