mRNA_H-akashiwo_Contig11.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.18.1
Unique NamemRNA_H-akashiwo_Contig11.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S3Y8X9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8X9_HETAK)

HSP 1 Score: 495 bits (1275), Expect = 2.720e-166
Identity = 249/281 (88.61%), Postives = 260/281 (92.53%), Query Frame = 3
Query:  297 HVECIALLKEF*PIFGNGREKAGPLLQFHPGETEVTREAQRWTESDNWRSSRVLVAADTNAKSHLRHSGKEESCGRELEAFILGHGLAVVNCESPHFTFKGAQGSSNIDLTLAGHSLAQHITGWRVLGGESVADHNYVRFDLDLRNRFPSASREISKYVLRRMDVSLLRERAKEELAAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQCERLALNQAMCTAKRPSWRKFCS 1139
            H+EC AL+KEF PIFGNGREKAGPLLQFHPGETEVTREAQRWTESDNWRSSRVLVAADTNAKSHL HSG+E+  G+ELEAFILG GLAVVN  SPHFTF+GAQ SSNIDLTLAGHSLAQHITGWRVLGGESVADHNYV FDLDL NR PSASR+ISKY LRRMDV LLRERAKEELAAAVAAGRLG+PLLDPTTVDTAVAALAEA WGAFQAATPLKRRK+WKKAVPWWTPE+S LK RFRRARKKRRRSAQHEEEFQ ERLA N+AM TAKR SWRKFCS
Sbjct:   43 HLECTALVKEFQPIFGNGREKAGPLLQFHPGETEVTREAQRWTESDNWRSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQESSNIDLTLAGHSLAQHITGWRVLGGESVADHNYVCFDLDLGNRLPSASRKISKYALRRMDVILLRERAKEELAAAVAAGRLGVPLLDPTTVDTAVAALAEALWGAFQAATPLKRRKAWKKAVPWWTPEISVLKTRFRRARKKRRRSAQHEEEFQRERLAFNRAMRTAKRRSWRKFCS 323          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S4DEI5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEI5_HETAK)

HSP 1 Score: 428 bits (1101), Expect = 3.000e-141
Identity = 219/257 (85.21%), Postives = 232/257 (90.27%), Query Frame = 3
Query:  369 LLQFHPGETEVTREAQRWTESDNWRSSRVLVAADTNAKSHLRHSGKEESCGRELEAFILGHGLAVVNCESPHFTFKGAQGSSNIDLTLAGHSLAQHITGWRVLGGESVADHNYVRFDLDLRNRFPSASREISKYVLRRMDVSLLRERAKEELAAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQCERLALNQAMCTAKRPSWRKFCS 1139
            +  +   +TEVT EAQRWTESDNW+SSRVLVAADTNAKSHL HSG+E+  G+ELEAFILG GLAVVN  SPHFTF+GAQGSSNIDLTLAGHSLAQ ITGWRVLGGESVADHNYV FDLDL NR PSASR+ISKY LRRMDV LLRERAKEELAAAVAAGRLG+PLLDPTTVDTAVAALAEA WGAFQAATPLKRRK+WKKAVPWWTPE+S LK RFRRARKKRRRSAQHEEEFQ ERLA N+AM TAKR SWRKFCS
Sbjct:    1 VCSYMAKDTEVTWEAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQGSSNIDLTLAGHSLAQRITGWRVLGGESVADHNYVCFDLDLGNRLPSASRKISKYALRRMDVILLRERAKEELAAAVAAGRLGVPLLDPTTVDTAVAALAEALWGAFQAATPLKRRKAWKKAVPWWTPEISVLKTRFRRARKKRRRSAQHEEEFQRERLAFNRAMRTAKRRSWRKFCS 257          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S3Y2N9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2N9_HETAK)

HSP 1 Score: 366 bits (940), Expect = 3.530e-118
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = -2
Query: 1505 KINFSKDPEKMKAIAFTTCRDGQRGKDIAVPDTVLDCQDIPEWHGHSIPFGADIPGVILDRKLTWISHIEACTKKAKQLAVAMASCARAKWGLGRRVVQQIYKGAVEPIMLNGVVAWAAALSKRGAQRRLRSVQRLAALAMTGCFRTTSTNAALALAGLLPAEMAAGKLPVQQYCHGPLSRR 2050
            KINFSKDPEKMKAIAFTTCRDGQRGKDIAVPDTVLDCQDIPEWHGHSIPFGADIPGVILDRKLTWISHIEACTKKAKQLAVAMASCARAKWGLGRRVVQQIYKGAVEPIMLNGVVAWAAALSKRGAQRRLRSVQRLAALAMTGCFRTTSTNAALALAGLLPAEMAAGKLPVQQYCHGPLSRR
Sbjct:   17 KINFSKDPEKMKAIAFTTCRDGQRGKDIAVPDTVLDCQDIPEWHGHSIPFGADIPGVILDRKLTWISHIEACTKKAKQLAVAMASCARAKWGLGRRVVQQIYKGAVEPIMLNGVVAWAAALSKRGAQRRLRSVQRLAALAMTGCFRTTSTNAALALAGLLPAEMAAGKLPVQQYCHGPLSRR 198          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S3Y8X7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8X7_HETAK)

HSP 1 Score: 338 bits (868), Expect = 1.820e-105
Identity = 170/198 (85.86%), Postives = 179/198 (90.40%), Query Frame = -2
Query: 1463 KINFSKDPEKMKAIAFTTCRDGQRGKDIAVPDTVLDCQDIPEWHGHSIPFGADIP--GVILDRKLTWISHIEACTKKAKQLAVAMASCARAKWGLGRRVVQQIYKGAVEPIMLNGVVAWAAALSKRGAQRRLRSVQRLAALAMTGCFRTTSTNAALALAGLLPAEMAAGKLPVQQYCHGPLSRRLEIICTPCKWSSGL 2050
            KINFSKDPEKMKA+AFTTCR+G RGKDI VP  VLDCQD+PEWHGHSIP   ++   GVILDRKLTW SHIEACTKKAKQLAVAM SCARAKWGLGR VV+QIYKGAVEPIMLNGVVAWAAAL K+GAQRRLRSVQRLAALAMTGCFRTTST AALALAGLLPAEMAAGK+ VQQYCHGP+SRRLEII TPCKWS  L
Sbjct:  127 KINFSKDPEKMKAMAFTTCREGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRSVVKQIYKGAVEPIMLNGVVAWAAALPKKGAQRRLRSVQRLAALAMTGCFRTTSTKAALALAGLLPAEMAAGKVLVQQYCHGPMSRRLEIIRTPCKWSPHL 324          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S4DEH0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEH0_HETAK)

HSP 1 Score: 317 bits (813), Expect = 6.920e-99
Identity = 160/188 (85.11%), Postives = 169/188 (89.89%), Query Frame = -2
Query: 1463 MKAIAFTTCRDGQRGKDIAVPDTVLDCQDIPEWHGHSIPFGADIP--GVILDRKLTWISHIEACTKKAKQLAVAMASCARAKWGLGRRVVQQIYKGAVEPIMLNGVVAWAAALSKRGAQRRLRSVQRLAALAMTGCFRTTSTNAALALAGLLPAEMAAGKLPVQQYCHGPLSRRLEIICTPCKWSSGL 2020
            MKA+AFTTCR+G RGKDI VP  VLDCQD+PEWHGHSIP   ++   GVILDRKLTW SHIEACTKKAKQLAVAM SCARAKWGLGR VV+QIYKGAVEPIMLNGVVAWAAAL K+GAQRRLRSVQRLAALAMTGCFRTTST AALALAGLLPAEMAAGK+ VQQYCHGP+SRRLEII TPCKWS  L
Sbjct:    1 MKAMAFTTCREGHRGKDIVVPAIVLDCQDMPEWHGHSIPVADELTFLGVILDRKLTWASHIEACTKKAKQLAVAMTSCARAKWGLGRSVVKQIYKGAVEPIMLNGVVAWAAALPKKGAQRRLRSVQRLAALAMTGCFRTTSTKAALALAGLLPAEMAAGKVLVQQYCHGPMSRRLEIIRTPCKWSPHL 188          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S3Y8U4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8U4_HETAK)

HSP 1 Score: 244 bits (623), Expect = 1.620e-72
Identity = 123/149 (82.55%), Postives = 132/149 (88.59%), Query Frame = 3
Query:  369 LLQFHPGETEVTREAQRWTESDNWRSSRVLVAADTNAKSHLRHSGKEESCGRELEAFILGHGLAVVNCESPHFTFKGAQGSSNIDLTLAGHSLAQHITGWRVLGGESVADHNYVRFDLDLRNRFPSASREISKYVLRRMDVSLLRERAK 815
            +  +   +TEVT EAQRWTESDNW+SSRVLVAADTNAKSHL HSG+E+  G+ELEAFILG GLAVVN  SPHFTF+GAQ SSNIDLTLAGHSLAQHITGWRVLGGESVADHNYV FDLDL NR PSASR+ISKY LRRMDVSLLRERAK
Sbjct:    1 VCSYMAKDTEVTWEAQRWTESDNWKSSRVLVAADTNAKSHLWHSGREDGRGQELEAFILGQGLAVVNRVSPHFTFEGAQESSNIDLTLAGHSLAQHITGWRVLGGESVADHNYVCFDLDLGNRLPSASRKISKYALRRMDVSLLRERAK 149          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S3Y954_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y954_HETAK)

HSP 1 Score: 220 bits (561), Expect = 5.750e-64
Identity = 107/112 (95.54%), Postives = 109/112 (97.32%), Query Frame = 3
Query: 2205 DEVQRRVGRIFTDGSKQDEGVGAAFVVMDGQGRVLATGLLRLSPWATLEWCRGHQQERGWVVASDSCAVLSNVLSQRRLTPITAQAVRLAGDCHSLVYVPGHQGIPGNEEAD 2540
            DEVQRRVGRIFTDGSKQDEGVGAAFVV+DGQGRVLATGLLRLSPWATLEWCRGHQQERGWVVASDSCAVLSNVLSQRRLTPITA+ VRLAGDCHSLVYVPGHQGI GN EAD
Sbjct:    1 DEVQRRVGRIFTDGSKQDEGVGAAFVVVDGQGRVLATGLLRLSPWATLEWCRGHQQERGWVVASDSCAVLSNVLSQRRLTPITAEVVRLAGDCHSLVYVPGHQGILGNGEAD 112          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S3XPL3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPL3_HETAK)

HSP 1 Score: 226 bits (577), Expect = 6.120e-63
Identity = 184/453 (40.62%), Postives = 209/453 (46.14%), Query Frame = 3
Query:  966 KAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQCERLALNQAMCTAKRPSWRKFCSEEKQP-FGRVYNKVLPH*QLPSGAAVQLERELVQLLQAPSPGLSPRGVGPPIYWTTHNDRVAVYVEVGGEALFIGYADDNGFTVEGGPDELDALVELAARVLVSVMKQCRPLDHLHGVQMISSLLDRGPWQYCCTGSFPAAISAGSRPASASAALVEVVRKQPVMARAARRCTLRSLLCAPRLDRAAAHATTPLSMMGSTAPL*ICWTTLRPSPHFARAQLAIATASCLAFFVQASMWLIQVSFLSKITPGMSAPNGMECPCHSGISWQSSTVSGTAMSLPLWPSLQVVKAIAFIFSGSFEKFILPHLWHVRQLLQSAGIRLDWSFERRVQNYEMGYPPHRGEVRVVLGTRDSWAEDEVQRRVGRIFTDGSKQDEGVGAAFVVMDGQGRVLATGL 2321
            KAVPWWTPELS LK RFRRARKKRRRS+QHEEE QCE LALN+ M TAK  SW KFCSE+KQP F  VY  +L      S   +  ER +  LL    P                 DR A   E                         DA V   A V   V +     ++L     +  ++ RG               AG RPA         + KQ    R      LR + C       AA A T    M ST+                    A+A A  L   + A   L+Q                    CH+ +S +  T+         W                     LP LWHVRQLLQ AGI LDW FERR QN+EM YPPHR EVRVVLGTRDSWA+DEV RRVGRIFTDGSK+DEGVGAAFVVMDGQGRVLATGL
Sbjct:   59 KAVPWWTPELSVLKTRFRRARKKRRRSSQHEEELQCELLALNRPMHTAKSRSWHKFCSEDKQPPFDGVYKAILQG--RGSNPIIDTERSVSTLLNNLFP-----------------DRAAEASE-------------------------DAAV---AAVQERVERWVSQFENLCSKGAVELIMVRGV--------------AGGRPAG--------LTKQGTARR------LRGVPCL------AALAMTGCFQMTSTSA-------------------ALALAGLLPEEMAAGKKLVQQQH-----------------CHARLSSRLETIRTPCK----W---------------------LPPLWHVRQLLQPAGISLDWRFERRAQNHEMDYPPHRVEVRVVLGTRDSWAQDEVLRRVGRIFTDGSKRDEGVGAAFVVMDGQGRVLATGL 369          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S4DBB4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBB4_HETAK)

HSP 1 Score: 214 bits (545), Expect = 1.240e-60
Identity = 112/120 (93.33%), Postives = 114/120 (95.00%), Query Frame = 3
Query:  822 LAAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQCERLALNQAMCTAKRPSWRKFCSEEKQPFGRVYNKVL 1181
            +AAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQ ERLA N+AM TAKR SWRKFCS EKQPFGRVY KVL
Sbjct:    1 MAAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQRERLAFNRAMRTAKRRSWRKFCSGEKQPFGRVY-KVL 119          
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Match: A0A7S4DB43_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB43_HETAK)

HSP 1 Score: 218 bits (556), Expect = 6.270e-59
Identity = 173/456 (37.94%), Postives = 180/456 (39.47%), Query Frame = 3
Query:  822 LAAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQCERLALNQAMCTAKRPSWRKFCSEEKQPFGRVYNKVLPH*QLP-----------------------------------SGAAV---------------------------------QLERELVQL--LQAPSP-----------------------------GLSPRG----------------------------------------------------------------------------------------------------------------------------------------------------------VGPPIYWTTHNDRVAVYVEVGGEALFIGYADDNGFTVEGGPDELDALVELA 1430
            +AAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQ ERLA N+AM TAKR SWRKFCS EKQPFGRVY  +      P                                     AAV                                 +L RE+ Q    +AP P                             G  PRG                                                                                                                                                          VGPPIYWTTHN+RVAVYVEVGGEALFIGYADDNGFTVEGGPDEL ALVELA
Sbjct:    1 MAAAVAAGRLGIPLLDPTTVDTAVAALAEAQWGAFQAATPLKRRKSWKKAVPWWTPELSALKVRFRRARKKRRRSAQHEEEFQRERLAFNRAMRTAKRRSWRKFCSGEKQPFGRVYKVLKGRGSNPISTIRGPDGVLISDPEQSVATLLDNFFPDKAAEVSEDAAVAAAQECVERQASQFENWCRLSLPDDDDGPFTTFELRREIFQRGGYKAPGPDMIIGRVLKECIDEVEPHLASVTNACRDLGYFPRGWKVEDGVACAKPGKKDYTLMKAYRLLALLCAASKILEGMITSRVSWRAERGSWFHEHAYGFRPDRNKDGAVEELVTRAERAIHRGRVLVAVFFDVDGAFNQSWHPAVLTALQEKGCPPGLFCLISSFLRERQCNLNVNGFSASKLLRLGFPQGGVGPPIYWTTHNNRVAVYVEVGGEALFIGYADDNGFTVEGGPDELGALVELA 456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8X9_HETAK2.720e-16688.61Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DEI5_HETAK3.000e-14185.21Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y2N9_HETAK3.530e-118100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8X7_HETAK1.820e-10585.86Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4DEH0_HETAK6.920e-9985.11Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y8U4_HETAK1.620e-7282.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y954_HETAK5.750e-6495.54Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XPL3_HETAK6.120e-6340.62Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DBB4_HETAK1.240e-6093.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DB43_HETAK6.270e-5937.94Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:560112..562822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog5037.XP_001537962.1
PFAMsExo_endo_phos_2,RNase_H,RVT_1
Model size2670
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.94e-05
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39XVS@33154|Opisthokonta,3P0R9@4751|Fungi,3QZKV@4890|Ascomycota,20J9K@147545|Eurotiomycetes,3B663@33183|Onygenales
DescriptionEncoded by
Cds size825
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.7375255-UTR-H-akashiwo_Contig11:560111..5619551681387077.7375255-UTR-H-akashiwo_Contig11:560111..561955Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 560112..561955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.7474806-CDS-H-akashiwo_Contig11:561955..5626521681387077.7474806-CDS-H-akashiwo_Contig11:561955..562652Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 561956..562652 +
1681387077.756296-CDS-H-akashiwo_Contig11:562694..5628221681387077.756296-CDS-H-akashiwo_Contig11:562694..562822Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 562695..562822 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.18.1prot_H-akashiwo_Contig11.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 561956..562822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.18.1

>prot_H-akashiwo_Contig11.18.1 ID=prot_H-akashiwo_Contig11.18.1|Name=mRNA_H-akashiwo_Contig11.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=275bp
MWLIQVSFLSKITPGMSAPNGMECPCHSGISWQSSTVSGTAMSLPLWPSL
QVVKAIAFIFSGSFEKFILPHLWHVRQLLQSAGIRLDWSFERRVQNYEMG
YPPHRGEVRVVLGTRDSWAEDEVQRRVGRIFTDGSKQDEGVGAAFVVMDG
QGRVLATGLLRLSPWATLEWCRGHQQERGWVVASDSCAVLSNVLSQRRLT
PITAQAVRLAGDCHSLVYVPGHQGIPGNEEADLDVPRAHTRRLARDYLWG
QWEREWASTGSPADLLPVYKRFARS
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mRNA from alignment at H-akashiwo_Contig11:560112..562822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.18.1 ID=mRNA_H-akashiwo_Contig11.18.1|Name=mRNA_H-akashiwo_Contig11.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2711bp|location=Sequence derived from alignment at H-akashiwo_Contig11:560112..562822+ (Heterosigma akashiwo CCMP452)
GAAAAAGGTTTACTGTTAATGGATGGAATAGACAGCTTCCTACACCTTCC ATGGAGATCTTGAACCTCAACCTTGTCCCAACATAAACTTCTGCTTCTGA AGCGTGGATCTTCGAGCGGGGTTGGTGAAAATTCAGGTGCCAAGAGGCCC TGTTCTGTTCCTGTGGCCGAGTATGTGATAACATTTTATGGTTTTGGTCA AGGAAGAGTGGGAAGAAGGATCTTCATTTTGGGGGGCGAAACTAGCAAGG TGTCCCACCATTCGAGACACGCACCTGATGAGTGGGTCAATGAATACACG TTGAGTGTATTGCTTTGCTGAAAGAATTTTAGCCAATCTTTGGAAACGGC AGGGAAAAGGCTGGTCCATTGCTACAATTCCATCCCGGGGAAACTGAGGT CACACGGGAGGCACAGCGCTGGACTGAGTCGGACAACTGGAGATCCAGCA GAGTACTGGTGGCGGCCGACACCAACGCGAAGTCGCACCTCCGGCACAGC GGCAAGGAGGAAAGCTGCGGCCGGGAGCTCGAGGCCTTCATATTGGGCCA TGGGCTGGCAGTGGTGAATTGTGAGTCACCCCATTTCACCTTCAAGGGGG CCCAGGGATCTTCAAATATCGACCTGACCCTGGCTGGCCACAGTCTGGCG CAGCACATCACTGGCTGGAGAGTTCTGGGGGGTGAGTCCGTGGCCGACCA CAACTATGTGCGTTTCGACCTGGATCTGAGGAACAGGTTTCCCTCTGCTA GCCGGGAAATCTCCAAGTATGTGTTGCGGCGCATGGACGTCAGCCTTCTG AGAGAGCGTGCCAAGGAGGAGCTGGCGGCGGCGGTAGCGGCTGGGCGCCT GGGTATACCTCTGTTGGACCCAACCACGGTAGACACCGCGGTTGCAGCGC TCGCTGAAGCCCAGTGGGGCGCTTTCCAGGCAGCCACCCCACTGAAGCGC CGCAAGTCGTGGAAGAAGGCTGTGCCATGGTGGACGCCTGAGCTCTCAGC GCTGAAGGTACGTTTCCGCCGGGCACGCAAGAAGAGAAGGAGGTCAGCGC AGCACGAGGAGGAGTTCCAGTGCGAGCGCCTGGCTTTGAACCAGGCCATG TGCACGGCCAAGAGGCCGAGCTGGCGTAAGTTCTGCTCGGAGGAGAAGCA GCCCTTCGGCCGGGTCTACAACAAGGTCCTGCCTCATTAGCAGCTTCCTT CGGGAGCGGCAGTGCAACTTGAACGTGAACTGGTTCAGCTCCTCCAAGCT CCTTCGCCTGGGCTTTCCCCAAGGGGAGTTGGCCCGCCCATCTACTGGAC CACACACAACGACAGGGTGGCGGTGTACGTGGAGGTGGGTGGTGAGGCAC TTTTTATCGGCTATGCAGACGACAACGGGTTCACCGTGGAGGGGGGGCCC GACGAGCTCGACGCCTTGGTGGAGCTGGCAGCTCGTGTGCTTGTCTCCGT GATGAAGCAGTGCAGGCCACTCGACCACTTGCACGGGGTACAGATGATCT CCAGTCTCCTGGACAGGGGGCCATGGCAGTACTGCTGTACCGGCAGCTTC CCAGCAGCCATTTCCGCCGGTAGCAGGCCCGCCAGTGCCAGTGCCGCGTT GGTTGAGGTCGTTCGGAAGCAGCCGGTCATGGCCAGGGCCGCCAGGCGCT GTACACTCCGCAGTCTCCTCTGTGCCCCCCGCTTGGACAGGGCGGCCGCC CATGCCACAACCCCATTAAGCATGATGGGCTCCACCGCCCCCTTGTAAAT CTGCTGGACCACCCTGCGCCCCAGCCCCCACTTCGCCCGTGCACAGCTTG CCATCGCCACCGCCAGCTGCTTGGCCTTCTTCGTGCAGGCCTCAATGTGG CTTATCCAGGTGAGCTTCCTGTCCAAGATCACCCCAGGAATGTCAGCTCC AAACGGGATGGAGTGTCCATGCCACTCCGGTATATCCTGGCAGTCCAGCA CGGTGTCCGGGACAGCTATGTCCTTACCCCTCTGGCCATCTCTGCAGGTT GTGAAGGCAATAGCTTTCATCTTCTCCGGGTCCTTTGAGAAGTTTATCTT GCCACACCTGTGGCACGTTCGGCAGCTGCTGCAGTCGGCCGGAATCAGGC TGGACTGGAGCTTCGAACGGCGCGTGCAGAATTACGAGATGGGCTACCCG CCCCATCgggGGGAGGTCCGCGTGGTGCTGGGCACGAgGGACAGTTGGGC GGAGGATGAGGTACAGAGGCGCGTCGGGCGCATCTTCACGGACGGATCTA AGCAGGACGAgGGGGTAgGGGCGGCCTTCGTCGTCATGGACGGCCAAGGG AGGGTGCTGGCGACAGGCCTTCTTCGGCTGTCGCCGTGGGCAACTTTGGA GTGGTGCCGGGGTCATCAACAGGAGAGGGGTTGGGTCGTTGCCTCGGACT CGTGCGCCGTGCTATCCAATGTGCTGAGCCAGCGCAGGCTCACCCCCATC ACGGCACAGGCGGTGCGGCTGGCGGGCGACTGCCACTCCCTGGTCTACGT CCCAGGGCACCAGGGCATTCCAGGGAACGAGGAGGCAGACCGCCTTGCCA ACCTCGCAGTGAAGAATATGATCTACACTCCAGTGGATGTGCCCCGTGCG CACACAAGGCGCCTGGCCAGGGACTACCTCTGGGGGCAGTGGGAGAGGGA GTGGGCAAGTACTGGCTCCCCTGCAGACCTCCTGCCGGTGTACAAGCGCT TCGCCCGGAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:560112..562822+

>mRNA_H-akashiwo_Contig11.18.1 ID=mRNA_H-akashiwo_Contig11.18.1|Name=mRNA_H-akashiwo_Contig11.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=825bp|location=Sequence derived from alignment at H-akashiwo_Contig11:560112..562822+ (Heterosigma akashiwo CCMP452)
ATGTGGCTTATCCAGGTGAGCTTCCTGTCCAAGATCACCCCAGGAATGTC
AGCTCCAAACGGGATGGAGTGTCCATGCCACTCCGGTATATCCTGGCAGT
CCAGCACGGTGTCCGGGACAGCTATGTCCTTACCCCTCTGGCCATCTCTG
CAGGTTGTGAAGGCAATAGCTTTCATCTTCTCCGGGTCCTTTGAGAAGTT
TATCTTGCCACACCTGTGGCACGTTCGGCAGCTGCTGCAGTCGGCCGGAA
TCAGGCTGGACTGGAGCTTCGAACGGCGCGTGCAGAATTACGAGATGGGC
TACCCGCCCCATCgggGGGAGGTCCGCGTGGTGCTGGGCACGAgGGACAG
TTGGGCGGAGGATGAGGTACAGAGGCGCGTCGGGCGCATCTTCACGGACG
GATCTAAGCAGGACGAgGGGGTAgGGGCGGCCTTCGTCGTCATGGACGGC
CAAGGGAGGGTGCTGGCGACAGGCCTTCTTCGGCTGTCGCCGTGGGCAAC
TTTGGAGTGGTGCCGGGGTCATCAACAGGAGAGGGGTTGGGTCGTTGCCT
CGGACTCGTGCGCCGTGCTATCCAATGTGCTGAGCCAGCGCAGGCTCACC
CCCATCACGGCACAGGCGGTGCGGCTGGCGGGCGACTGCCACTCCCTGGT
CTACGTCCCAGGGCACCAGGGCATTCCAGGGAACGAGGAGGCAGACCTGG
ATGTGCCCCGTGCGCACACAAGGCGCCTGGCCAGGGACTACCTCTGGGGG
CAGTGGGAGAGGGAGTGGGCAAGTACTGGCTCCCCTGCAGACCTCCTGCC
GGTGTACAAGCGCTTCGCCCGGAGC
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