mRNA_H-akashiwo_Contig11.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.22.1
Unique NamemRNA_H-akashiwo_Contig11.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:615099..615651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size553
Hectar predicted targeting categoryother localisation
Exons1
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.1499395-UTR-H-akashiwo_Contig11:615098..6151341681387077.1499395-UTR-H-akashiwo_Contig11:615098..615134Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 615099..615134 +
1681387077.1693711-UTR-H-akashiwo_Contig11:615569..6156511681387077.1693711-UTR-H-akashiwo_Contig11:615569..615651Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 615570..615651 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.1595106-CDS-H-akashiwo_Contig11:615134..6155691681387077.1595106-CDS-H-akashiwo_Contig11:615134..615569Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 615135..615569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.22.1prot_H-akashiwo_Contig11.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 615135..615569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.22.1

>prot_H-akashiwo_Contig11.22.1 ID=prot_H-akashiwo_Contig11.22.1|Name=mRNA_H-akashiwo_Contig11.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp
MVVMRKGKQVGSLRVVATHKVVLARSDMSGCHLDGCWLLYVLHTSSVISC
CSLTECVRFVLNKPTAVLLCSWIMPTNNAPPQRTDEHRNTVVGEKIPHHW
AKAESCFKNKLQQKLKAPPELKAIIRNKIGPTRCGTSSSHLPLL*
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mRNA from alignment at H-akashiwo_Contig11:615099..615651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.22.1 ID=mRNA_H-akashiwo_Contig11.22.1|Name=mRNA_H-akashiwo_Contig11.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=553bp|location=Sequence derived from alignment at H-akashiwo_Contig11:615099..615651+ (Heterosigma akashiwo CCMP452)
TTGAAGAGAGAAGTGTAGTTTTAATGTTGATTATTTATGGTTGTGATGAG
AAAGGGAAAACAGGTTGGTTCACTGCGCGTGGTGGCAACACACAAAGTGG
TGCTTGCCAGGTCAGACATGAGCGGCTGTCATTTGGATGGCTGCTGGTTG
TTGTACGTACTTCACACATCATCAGTCATCAGTTGTTGTTCACTAACTGA
ATGCGTGCGGTTTGTCCTTAACAAACCAACTGCTGTGTTGCTGTGTTCAT
GGATAATGCCAACAAACAACGCCCCACCACAGCGGACAGATGAGCACAGG
AACACAGTAGTAGGAGAAAAGATCCCCCACCACTGGGCAAAAGCTGAAAG
CTGTTTCAAAAACAAGCTCCAACAGAAGTTGAAAGCCCCACCAGAGTTGA
AAGCCATCATAAGAAACAAAATAGGCCCCACCAGATGTGGAACTTCATCA
AGTCATTTACCATTATTGTAGAGGCAGGTAGTTGCCCCATAAAAATCTTT
ACTGCCCGAAGAGGGTCAGGGTGCCCCAAATGCCAAGTTGAATCAAGGCA
CAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:615099..615651+

>mRNA_H-akashiwo_Contig11.22.1 ID=mRNA_H-akashiwo_Contig11.22.1|Name=mRNA_H-akashiwo_Contig11.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=435bp|location=Sequence derived from alignment at H-akashiwo_Contig11:615099..615651+ (Heterosigma akashiwo CCMP452)
ATGGTTGTGATGAGAAAGGGAAAACAGGTTGGTTCACTGCGCGTGGTGGC
AACACACAAAGTGGTGCTTGCCAGGTCAGACATGAGCGGCTGTCATTTGG
ATGGCTGCTGGTTGTTGTACGTACTTCACACATCATCAGTCATCAGTTGT
TGTTCACTAACTGAATGCGTGCGGTTTGTCCTTAACAAACCAACTGCTGT
GTTGCTGTGTTCATGGATAATGCCAACAAACAACGCCCCACCACAGCGGA
CAGATGAGCACAGGAACACAGTAGTAGGAGAAAAGATCCCCCACCACTGG
GCAAAAGCTGAAAGCTGTTTCAAAAACAAGCTCCAACAGAAGTTGAAAGC
CCCACCAGAGTTGAAAGCCATCATAAGAAACAAAATAGGCCCCACCAGAT
GTGGAACTTCATCAAGTCATTTACCATTATTGTAG
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