mRNA_H-akashiwo_Contig11.115.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.115.1
Unique NamemRNA_H-akashiwo_Contig11.115.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:5032180..5034440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size206
Hectar predicted targeting categoryother localisation
Exons3
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387077.0156386-CDS-H-akashiwo_Contig11:5032179..50322451681387077.0156386-CDS-H-akashiwo_Contig11:5032179..5032245Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5032180..5032245 +
1681387077.0248518-CDS-H-akashiwo_Contig11:5032572..50326701681387077.0248518-CDS-H-akashiwo_Contig11:5032572..5032670Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5032573..5032670 +
1681387077.0330749-CDS-H-akashiwo_Contig11:5034400..50344401681387077.0330749-CDS-H-akashiwo_Contig11:5034400..5034440Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 5034401..5034440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.115.1prot_H-akashiwo_Contig11.115.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 5032180..5034440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.115.1

>prot_H-akashiwo_Contig11.115.1 ID=prot_H-akashiwo_Contig11.115.1|Name=mRNA_H-akashiwo_Contig11.115.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
AASPQQREAGRIYLEGLLDVLEKACGNEDLFQDDSKSRIEDFVSKTIFEP
DENNMYVEPLVEVYWSAH
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mRNA from alignment at H-akashiwo_Contig11:5032180..5034440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.115.1 ID=mRNA_H-akashiwo_Contig11.115.1|Name=mRNA_H-akashiwo_Contig11.115.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2261bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5032180..5034440+ (Heterosigma akashiwo CCMP452)
GCAGCCAGCCCTCAGCAACGCGAAGCGGGGCGTATTTACCTAGAAGGCCT
TCTGGATGTTCTAGAGGTGAGAAATGTGGTCAAGTTGTTGAAGAATTATG
ATTGTGGTGGCAATTTTTTCAACTTCTGTCCTGACTTCTACTCTCCACTT
AGTCCTCCGTGTGCCCGTGTCCTTTGCATCAAAAGCACACTCACCACCAC
AGCAAGTATTCTACATCAATCTGTGAAAGGTAAGAATGTGGAGAGTCGAT
TACACCTCTTGTTTTCTTTTCTGGTGTATGTATTCGTTCAAGTGAAACTA
TTTAGAATACCAATGTATTATATATACACTTGGTGTGTGGTTTGCTTTGT
TCAACTCATCTGTTGATTGAATCATAACTTTTTACACACACAGAAAGCTT
GTGGCAATGAAGACCTTTTCCAAGATGATTCGAAGTCCCGTATTGAAGAT
TTTGTTTCAAAAACAATCTTTGAGCCAGATGAAAACAACATGTAATGTCA
ATATGGCACTTATGCATTGCTAGAGGGGTGTTTATACGCATAAGTGCAGT
TTTAAGTATTTTTACTGGTCTTCATCTGATTTCAAAGAACTTGCATTATT
ACTTCAGGGCCATGTTTCATAATATATTGTGATGCATCATCAATTGCTTT
CTTCTACTTATGATGCATTGCATGATAACCTTCACATGAGCTGGCACGCC
ATTTCTTCACTATAAAATAAAAGCAGTTCTGAAATCCCTGAAGCAGCATC
CTGAAGATGCTATACCAGAGCCCGATTTTCGGGTTTCGGACATCCGCTGG
TTTTCGGGGCCCGATTTCGATTTCGGGGCCGTTTCGGGAACGGTTTCGCG
CCATATTTCATCTGCGCGCTATCTCCAGGCGTCCAACATAAGCTTGAAAA
CCGGGCTAGGAAGCAGCACTCGTCGTGCTGCGAAAACAGGGGTGGACTGC
GCCAGTCTTGGTGATACCATCCCGACCCGCGGGAAGGAGAAGATGCACTC
GTCGATGGATGTGAATTGTCGGAGGAAGCGCCCACGGTAGAGACAACTGA
AAGAGGGAGATGAGGCCAAGGACAATAGAGCATGTAGGGTTAAGGATAGC
TGGAACTTcGGTTGGTCAGTAATCACACTTGGCTCGAAGAAATGCATCAG
ATGTCAAGGCAGCCTGCAAATAGACGGTGGTTGTGTGGTTCAGGATGTGA
AGGAACGCATTGCAAGTAGAACATATACAAAAAAAAAAAAAAAAAACTCG
AATCCAAAAATAAAGGATACTTTTCTATATAGCCGTTTCGCGTGTAGATT
CAGATAATAAAAAAAAAAAACTAGAAACGTAATTTTTAATTTTTCAGGCG
GGTTTTGGTATCCGCCCAACCGAAAGTGCCCTGTATCTCGGATGCGGGAC
AAAATTTACACACTGCATCATTTTTGGAAGCTTTACAAAAAACGGCTATA
AGAATGTATCCTTTATTTTCGGATCCGAGTTGGACGCCTCGCGCTACGGC
CGATCGTGCTTCATGTGAAGTTAATGATACAATGCATCATAGCAAGTATA
CATACATCATATATAATTGTCTTCACGAAGGATGAAACACAGCTGGCCCT
AGTTCAAGCATCTCCGCCCATTACTGAAAGCATGAAGATATATAGTATAA
TTTTGTTGATTATTTAGCCTCGTTCTTTGAGGATGGTAGTGGAGTTGTTA
AACCAGGGTCAGATGTGTTACATCTGTCAAGACATCGAGGTCATGTCAAA
TATATAGTGTGTATTAGAATATATTAGTTGTGTCGTTGATAAATAATTGC
CTTGGAAGAGGAGACTAACCAACACTATAATTAATATATTATATGTGTGA
TCGTATATATTGTTGCTATTTAAATATTCTTCCATTGTCATGATGGTGAT
GATGATGTTAGATTTATAATTTTACAGTCTAGCCTTTCAAATCGCTTCCT
TAGAAAAACAGCCAAAACTTATTATATATACCATCAGTGGTAGTTGATTT
TATCCTGATACTATTTTACCATTGTTTCGTCCATCCAAGCGTTCAGTAAA
CTTATACAAGGTTGTTCAGGGTGTCTTTTTCAATGGTGTAGACCCCCGAA
AAAAAAAAAACTTAAGTATTGCTATGTATGTGGTTGGTAGTGGTTCACGT
TGTTGTATATTATTTTTGAAGGACTACTGAATGCAAATATCATGTTCTTT
TCTTCTTCTTTTTGAAAAAAGGTATGTTGAACCACTTGTGGAGGTCTACT
GGTCCGCTCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:5032180..5034440+

>mRNA_H-akashiwo_Contig11.115.1 ID=mRNA_H-akashiwo_Contig11.115.1|Name=mRNA_H-akashiwo_Contig11.115.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig11:5032180..5034440+ (Heterosigma akashiwo CCMP452)
GCAGCCAGCCCTCAGCAACGCGAAGCGGGGCGTATTTACCTAGAAGGCCT
TCTGGATGTTCTAGAGAAAGCTTGTGGCAATGAAGACCTTTTCCAAGATG
ATTCGAAGTCCCGTATTGAAGATTTTGTTTCAAAAACAATCTTTGAGCCA
GATGAAAACAACATGTATGTTGAACCACTTGTGGAGGTCTACTGGTCCGC
TCAT
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