mRNA_H-akashiwo_Contig1092.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1092.1.1
Unique NamemRNA_H-akashiwo_Contig1092.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1092.1.1 vs. uniprot
Match: A0A6V2ZDD0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2ZDD0_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 5.330e-22
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1 
Query:    1 GLYLSFTGIICVSSLFAANCLKAERHHTLKVGIFVGAVVFGLVPAV 138
            GLYLSFTGIICVSSLFAANCLKAERHHTLKVGIFVGAVVFGLVPAV
Sbjct:  224 GLYLSFTGIICVSSLFAANCLKAERHHTLKVGIFVGAVVFGLVPAV 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V2ZDD0_HETAK5.330e-22100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1092contigH-akashiwo_Contig1092:9645..12947 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size141
Hectar predicted targeting categorysignal peptide
Exons2
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387074.6019578-CDS-H-akashiwo_Contig1092:9644..97341681387074.6019578-CDS-H-akashiwo_Contig1092:9644..9734Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1092 9645..9734 +
1681387074.6121423-CDS-H-akashiwo_Contig1092:12897..129451681387074.6121423-CDS-H-akashiwo_Contig1092:12897..12945Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1092 12898..12945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1092.1.1prot_H-akashiwo_Contig1092.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1092 9645..12945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1092.1.1

>prot_H-akashiwo_Contig1092.1.1 ID=prot_H-akashiwo_Contig1092.1.1|Name=mRNA_H-akashiwo_Contig1092.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=46bp
GLYLSFTGIICVSSLFAANCLKAERHHTLKVGIFVGAVVFGLVPAV
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mRNA from alignment at H-akashiwo_Contig1092:9645..12947+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1092.1.1 ID=mRNA_H-akashiwo_Contig1092.1.1|Name=mRNA_H-akashiwo_Contig1092.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3303bp|location=Sequence derived from alignment at H-akashiwo_Contig1092:9645..12947+ (Heterosigma akashiwo CCMP452)
GGCTTGTATCTTAGCTTTACTGGCATTATTTGTGTATCCAGCTTGTTTGC
AGCAAACTGTCTTAAAGCGGAGCGGCACCACACCTTGAAGGTGGGAGTTG
GGCTGATTTTTACTTACATTGGACAACATAGGGCCTGTGCCTTTATTCAT
TTGTTGAATATATAGTGCAACAAGTATTGTATGTTTTTTTTTGTTGTGTT
TTGATTAATGGTGTTGAGTTAGGGTGTCTAGGAATGATTAGAACGGTTCG
GTGCAATGGGCTGAGATCGAGGGTTATAAGTTCTACTTTGCAACACGAGC
TGAGAAGCTGCTTGAAAGGGGAGCATAGAGTGAGCAAGCAGCGTCCCAGT
TCGTGTTGCAAGCAGAACTTAACCCCCGATCTCAGGCCATTTTCACATTG
TTCGATTATCAGCTCCGACCCAGTGCGAGCATGATGCATGGCCGCGATTT
TTCCCAGATGTTCAGCCGTGTCTGCCTTAGCACCATTGTGCTAAATACAA
AAAATTGATTGCCTTGAGTTCATGTTTTGGAAACAGGAGCAGTCTGAGGG
GGGCTTCAGGCCGTGATAATTATGGCAGTGATCAAACAGCAGTACAGTAT
TGAAACTACCCCCTGTTGAATAATTTGTTAAATGGATATAGAACAATAAT
GTGCCCTACAAAGTAGGTCTAGATCAATGTGGAAAGGTGCAGGTCCTAGT
TTGTGTGTTATAGAAGAAGGGAGTTGTACTGACGATGGCTTTTATAGCCG
AAACCGGTCTGCAACAGTCCTTTTAAAATATTGGAATCGCACATTATAGT
TTCATTGTGTTGTTTTCATGCGCTATAGCAGTATTTATGGCCTTGGCCTT
TAAGCTTTGATGGTGTCCGTGGAGCATTAGACTGGGTCAACGTCTTCATT
TTTGGAACTTCCTATGCCCTGATGGTGGTCCTATTAATCAAGGGAGGCAA
TACTTATAACAAGTTTTTTTTTTGTGCAAAGTAATCGCAATAACATCATA
TACTTTGGAAATGATGCATTCTCGCTCAGTTGGAATGTTTGCAGCAACCC
GCACGCTTTTCAGAAACAACAAAACTTGATGATATTTTTGTGATCCACAT
AGTACAACAATGACGTATACATACTGACAGCTGCTCTACTGACAAGAACC
AGGATGGTGTTGAGCTGCTGTTGAGAACTCCAATCCTTATTTTGAAATGC
TAGATCATTGGAACTCGTGTTGTCAACCTTCTTTCTCTTTTTACATCACT
CCCACTTATCCACCTTTTTATATCACTCCCACTTATCCTCCTTTAAAAAG
ATCGTTTTTTCCACAACATTACTTTTGGGGGCCTGGGCTTTGCCCTTCCC
CCCCCCATGGTCTTCCAGCTGGGCTGCCCCCACACCTAAAGGTTATTAAG
GGCCCACGTTTTGACTGTCTCTTCATATGCGGCGGCCCGCTGGATGCTTT
CAAGATCGTGATCTCTGCCCGTCACTCTACGTCGCACTGGACCTGTGAAG
ACCCTAGAAGGCCGATTCTGTGTTCACCTTGGTCTGGCTTTGTGTCAATT
CTGAACTGGGTGGCCTGGGCTAGAGCCAACGCGTTGAGACAACCGGCTCG
CCTGGATGGCTCGTGTTCTTCTGGGGACTTTGATTTTTTCATTCTTCACT
TTGTCCGAAGTTGTGCTCCTTTGTTTGGAGGAGGAGCAGCTTCGAGCTTC
TTCTGTTGTTTTCTTCTGCTCCACTGCAGAAGAAGCTAACCGTGAAAGTG
CGTCTCAGCCATCGCAATTCTCTTCTGCACCACGGCCATGTGGTGGGCTT
CTGCTGACCGAAGCGGCACACAGCTGTGACCCCTAGATTCTGCTCTTGAA
CATGATGATCATGATGATGACAACGACGACAACGGCTTCTTCCTGGTTTT
TGCCTCTTCTTGGTGATTCAAAAAGAATTTTCATTCCTTCTTCCTGATCA
TTTGGACTTTGCACATCTCTGAAGCGCTTTCTGTGATGCTCTTGACTCTC
TCTGCCACGTTCGTTCACTCAGCACTGGAATCAACGGTGGGGGAAGAACT
ACTACCCCCTGCTGCCAGAGCTTGGAGGCTCTTGATGCACTTGTCTTCGG
CCAAGTTTTTGCTGCTGCCAAATCTTCGATAACAGCTGTTTACTCTCTTC
CTTCTGTGCTTTGACTCCACTTAGCATTTGAGGCACCCTGACCTTTGGCT
CTTGTCTTGGGCAGTTTAGATATAGATGGAGTGGCTACCTGCCTCTAAAT
AAAGGTAAATGAAATGGTGGACTTTTGTGCCTACACATCCTTGGTGGACC
TCTTTTCTGACAACCTCACTCGACTGTGGTGGGACTTTTAGCACTCGAGC
TCAGTTGTCTACACTGAACTGGTGGGCAGCTTCTCCTCACAACTTCTGCT
CGCCTGTGGTGGGCCTGTGGAAATGGTGCATTCTCGCTCAGTTGGAATGT
TTTCAGCAACCCAAACAAAATTTGAGTATGTTGTTGTGACCCGCATAGTC
CAACAATGACGTACCTGCTGACAGCTGCTGTGCTGACAAGAACCAGGATG
GTGTTGAGCTGCCGTTGAGAACTCCAGTCCTTAATTTGAGATGCTAGATC
ATTCAAACTCGTGTTGTCAACCTTCTTTCTCTTTTAATATATCACTCCCC
CACTTATCCACCTTTAAAAAGATCAATTTCTCCACAACATTACTTTTGGG
GGCCTGGGCTTTCAGGGCTTTGCCCTTGCCCCCCCATGGTCTTCCAGCTG
GGCTGCCCCCACACCCAAAGTCATAACACAAAGAGATACTAAAAAAAAAG
GCGATACTGGCAAAAGTATCGTTGTTGATGCCATTGCAGCAAAGTTTTTT
GCCATACAACCAGACTCAACAGCCGTCAGCACAGTTTGTCAGAGGGCTGC
TACTAGGATAGTCCTTCAAATACTATGATATTTGCACATACATACATGCT
TATTCACAAGCAATGATTACAACCACGTGATGATGATGTTAGACTTATGT
TTCAGTCTTGCCACTCATGCCGCCCACGTATAGTATGTTTGCTGCATAAG
ATGGTGTTTTCAAAATATACGGGTTTTTTTTTCTTTCTTTTTTGCCTACC
TGTAAGCACAAAGTGGAGAAAATAGTTCAGCTAGGCTAATGCTACCTCTG
CTCATGTCATTTGCATTTTTCTTTCTTTCCCCTTTTTTTAATATATCATG
ACTTATCTGCGTGACCCGTTGCGCTCCACATGACCGAGTGCCCCCCCTCC
TAGGTGGGGATCTTCGTGGGGGCGGTGGTCTTTGGCCTGGTGCCGGCGGT
CCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1092:9645..12947+

>mRNA_H-akashiwo_Contig1092.1.1 ID=mRNA_H-akashiwo_Contig1092.1.1|Name=mRNA_H-akashiwo_Contig1092.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=138bp|location=Sequence derived from alignment at H-akashiwo_Contig1092:9645..12947+ (Heterosigma akashiwo CCMP452)
GGCTTGTATCTTAGCTTTACTGGCATTATTTGTGTATCCAGCTTGTTTGC
AGCAAACTGTCTTAAAGCGGAGCGGCACCACACCTTGAAGGTGGGGATCT
TCGTGGGGGCGGTGGTCTTTGGCCTGGTGCCGGCGGTC
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