prot_H-akashiwo_Contig91.12.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig91.12.1
Unique Nameprot_H-akashiwo_Contig91.12.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length110
Homology
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BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A7S2XVF6_9STRA (Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVF6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 2.350e-58
Identity = 93/109 (85.32%), Postives = 100/109 (91.74%), Query Frame = 0 
Query:    1 MSIEDKRMAVDAEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNPN 109
            MS+ DK+   + E ++E F+TGPLS+LMQSVK NTQVLINVRNNHKLL RVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNPN
Sbjct:    1 MSLADKQGMPEGENKDE-FNTGPLSILMQSVKQNTQVLINVRNNHKLLARVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNPN 108
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BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: T1G160_HELRO (Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Lophotrochozoa TaxID=1206795 RepID=T1G160_HELRO)

HSP 1 Score: 178 bits (452), Expect = 4.010e-56
Identity = 89/97 (91.75%), Postives = 93/97 (95.88%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A+KE+EEF+TGPLSVL  SVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKK+KPVNKDRYISKMFLRGDSVILVLKNP
Sbjct:   16 AQKEQEEFNTGPLSVLTLSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLKNP 112
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BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A2K1JZF8_PHYPA (Small nuclear ribonucleoprotein Sm D2 n=11 Tax=Embryophyta TaxID=3193 RepID=A0A2K1JZF8_PHYPA)

HSP 1 Score: 177 bits (449), Expect = 9.210e-56
Identity = 91/102 (89.22%), Postives = 94/102 (92.16%), Query Frame = 0 
Query:    8 MAVDAEK-EEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            M  D EK EEEEFSTGPLSVL  SVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct:    6 MEEDTEKTEEEEFSTGPLSVLTMSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRFISKMFLRGDSVIIVLRNP 107
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BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A7M7RA10_APIME (Small nuclear ribonucleoprotein Sm D2 n=11 Tax=Pterygota TaxID=7496 RepID=A0A7M7RA10_APIME)

HSP 1 Score: 177 bits (448), Expect = 1.910e-55
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A++EEEEF+TGPLSVL QSVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTE+P+TGKGKKKAKPVNKDR+ISKMFLRGDSVILVL+NP
Sbjct:   17 AKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
[Close]
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A0C9RCH5_9HYME (Small nuclear ribonucleoprotein Sm D2 n=34 Tax=Pterygota TaxID=7496 RepID=A0A0C9RCH5_9HYME)

HSP 1 Score: 177 bits (448), Expect = 1.910e-55
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A++EEEEF+TGPLSVL QSVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTE+P+TGKGKKKAKPVNKDR+ISKMFLRGDSVILVL+NP
Sbjct:   17 AKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
[Close]
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A6A4JQS1_APOLU (Small nuclear ribonucleoprotein Sm D2 n=7 Tax=Neoptera TaxID=33340 RepID=A0A6A4JQS1_APOLU)

HSP 1 Score: 177 bits (448), Expect = 1.910e-55
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A++EEEEF+TGPLSVL QSVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTE+P+TGKGKKKAKPVNKDR+ISKMFLRGDSVILVL+NP
Sbjct:   17 AKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
[Close]
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: E9HAP6_DAPPU (Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Protostomia TaxID=33317 RepID=E9HAP6_DAPPU)

HSP 1 Score: 177 bits (448), Expect = 2.040e-55
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A++EEEEF+TGPLSVL QSVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTEVP+TGKGKKK+KPVNKDR+ISKMFLRGDSVILVL+NP
Sbjct:   18 AKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPRTGKGKKKSKPVNKDRFISKMFLRGDSVILVLRNP 114
[Close]
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: B9FNU1_ORYSJ (Small nuclear ribonucleoprotein Sm D2 n=13 Tax=Poales TaxID=38820 RepID=B9FNU1_ORYSJ)

HSP 1 Score: 176 bits (446), Expect = 2.400e-55
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 0 
Query:    9 AVDAEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A   +KEEEEFSTGPLSVLM SVKNNTQVLIN RNN KLLGRV+AFDRHCNMVLENV+EMWTEVPKTGKGKKKA PVNKDR+ISKMFLRGDSVI+VL+NP
Sbjct:    5 ATQGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 104
[Close]
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A0A9Y193_LYGHE (Small nuclear ribonucleoprotein Sm D2 (Fragment) n=4 Tax=Panheteroptera TaxID=33351 RepID=A0A0A9Y193_LYGHE)

HSP 1 Score: 177 bits (448), Expect = 2.550e-55
Identity = 87/97 (89.69%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A++EEEEF+TGPLSVL QSVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTE+P+TGKGKKKAKPVNKDR+ISKMFLRGDSVILVL+NP
Sbjct:   17 AKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNP 113
[Close]
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Match: A0A2J7QXR4_9NEOP (Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QXR4_9NEOP)

HSP 1 Score: 178 bits (451), Expect = 2.630e-55
Identity = 88/97 (90.72%), Postives = 94/97 (96.91%), Query Frame = 0 
Query:   12 AEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDSVILVLKNP 108
            A++EEEEFSTGPLSVL QSVKNNTQVLIN RNN KLLGRVKAFDRHCNMVLENVKEMWTE+P+TGKGKKKAKPVNKDR+ISKMFLRGDSVILVL+NP
Sbjct:   60 AKREEEEFSTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKAKPVNKDRFISKMFLRGDSVILVLRNP 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig91.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2XVF6_9STRA2.350e-5885.32Small nuclear ribonucleoprotein Sm D2 n=1 Tax=Fibr... [more]
T1G160_HELRO4.010e-5691.75Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Loph... [more]
A0A2K1JZF8_PHYPA9.210e-5689.22Small nuclear ribonucleoprotein Sm D2 n=11 Tax=Emb... [more]
A0A7M7RA10_APIME1.910e-5589.69Small nuclear ribonucleoprotein Sm D2 n=11 Tax=Pte... [more]
A0A0C9RCH5_9HYME1.910e-5589.69Small nuclear ribonucleoprotein Sm D2 n=34 Tax=Pte... [more]
A0A6A4JQS1_APOLU1.910e-5589.69Small nuclear ribonucleoprotein Sm D2 n=7 Tax=Neop... [more]
E9HAP6_DAPPU2.040e-5589.69Small nuclear ribonucleoprotein Sm D2 n=5 Tax=Prot... [more]
B9FNU1_ORYSJ2.400e-5587.00Small nuclear ribonucleoprotein Sm D2 n=13 Tax=Poa... [more]
A0A0A9Y193_LYGHE2.550e-5589.69Small nuclear ribonucleoprotein Sm D2 (Fragment) n... [more]
A0A2J7QXR4_9NEOP2.630e-5590.72Small nuclear ribonucleoprotein Sm D2 n=2 Tax=Cryp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 27..106
e-value: 1.4E-18
score: 77.7
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 32..104
e-value: 1.6E-18
score: 66.2
NoneNo IPR availableGENE3D2.30.30.100coord: 17..109
e-value: 7.6E-43
score: 146.2
NoneNo IPR availablePANTHERPTHR12777:SF1SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 8..108
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 8..108
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 19..108
e-value: 3.21344E-57
score: 169.819
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 22..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig91contigH-akashiwo_Contig91:399833..400447 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig91.12.1mRNA_H-akashiwo_Contig91.12.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig91 399763..400876 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig91.12.1 ID=prot_H-akashiwo_Contig91.12.1|Name=mRNA_H-akashiwo_Contig91.12.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=110bp
MSIEDKRMAVDAEKEEEEFSTGPLSVLMQSVKNNTQVLINVRNNHKLLGR
VKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKPVNKDRYISKMFLRGDS
VILVLKNPN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027248Sm_D2
IPR010920LSM_dom_sf