prot_H-akashiwo_Contig884.3.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig884.3.1
Unique Nameprot_H-akashiwo_Contig884.3.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length294
Homology
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A836CMW4_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW4_9STRA)

HSP 1 Score: 337 bits (863), Expect = 6.300e-113
Identity = 181/291 (62.20%), Postives = 220/291 (75.60%), Query Frame = 0
Query:    6 AIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITL--PFGVDVILGTNGFIWITRSIEQ---GAASSSAD-DSAPL---AEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSI 287
            +IVVPG+ ITAE GF+RGHGTY+    ++ ++ G+  L+A VAGVVERVNKLISVRP+KSRYIGEVGDLVVGR+T +G KRW VD+  ++ AILMLSSVNLPGG QR RTYEDQLQMR+F++E+DLISAEVQ I  DGS+ LHTRSLKYGKLENG L+ V   L+KRLKQHFITL  P GVDV+LGTNG +WITR++     G  S  AD D+  L   AE L Q R++HA TPIL + RE+ICRVRN+V  L   +  + PDAI  VY  S+  G AAKDMLQ + + S+
Sbjct:    3 SIVVPGQVITAEGGFLRGHGTYI----QESEDGGEPQLIACVAGVVERVNKLISVRPVKSRYIGEVGDLVVGRVTEVGGKRWKVDVGGHQDAILMLSSVNLPGGAQRKRTYEDQLQMRTFFKENDLISAEVQQIQQDGSIVLHTRSLKYGKLENGQLLRVPQVLVKRLKQHFITLAPPIGVDVVLGTNGRVWITRAMPAEWTGGTSEGADMDTNVLTSKAETLMQLRRLHAETPILRDERERICRVRNAVVTLQHAFALITPDAIAAVYARSVEAGMAAKDMLQAEALASL 289          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A6H5KMR3_9PHAE (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR3_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 2.220e-111
Identity = 177/296 (59.80%), Postives = 223/296 (75.34%), Query Frame = 0
Query:    1 NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSI-------EQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSIT 288
            + A H IVVPG+ IT+  G++RGHGTY+    E+  + G   L+A VAGVVERVNKLISVRPIKSRYIGEVGDLVVGR+  +  KRWSV++ +++SA+LMLSSVNLPGG QRIRTYEDQLQMRSF+QE DLISAEVQ + SDG ++LHTRSLKYGKLENG LV+V P LI+RLKQH ++LP  GVDVILGTNG +WI+R+        E+G A+ +    AP AE L +QR+ HA T  + E R  ICRVRN++ AL  V+H V P++I+ VY  S++ G   KDML G+ +L++T
Sbjct:    2 SAAGHIIVVPGQEITSVQGYLRGHGTYV----EEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVAEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRIRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGS-VAPKAETLTRQRKQHAETETIGEVRTNICRVRNAIVALRNVFHLVTPESIMSVYRRSVTMGLQPKDMLSGEAVLALT 292          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A1V9YN11_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN11_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.040e-99
Identity = 151/264 (57.20%), Postives = 203/264 (76.89%), Query Frame = 0
Query:    3 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 266
            A + +V PG+ IT+EPGF+RGHGTY+        E G+  L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+TVQPSL+KRLKQH + LP G+DVILG NG+IW++RSIE  A S + ++S   A+V  +++  HA+T    E R+KI +V N++  L+  +  + P++I+ +YN
Sbjct:   27 AQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLVKRLKQHMLQLPIGIDVILGCNGYIWVSRSIEHDAESLTTNESR--ADVWTERKATHAATVTSAEDRKKIAKVTNAIAQLNTRFQTITPESIMALYN 278          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A7S1CHY9_9STRA (Ribosomal RNA-processing protein 4 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHY9_9STRA)

HSP 1 Score: 296 bits (758), Expect = 7.680e-97
Identity = 148/288 (51.39%), Postives = 204/288 (70.83%), Query Frame = 0
Query:    5 HAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSITEGLR 292
            H +V PGE IT EPGF+RGHG +M          G++ LVA+VAG+VERVNKL+SVRP+ +RY GEVGD++VGR+  +G +RW+VDI++ + A+LMLSSVNL GGVQR RT EDQ+ MR++Y+E DLISA+V ++ +DG+VSLH RSLK+GKLENG  + V  +LIKRLKQHF+ LP GVDVILG NGF+WI+ ++ +       +    LA+ ++ +++  A+  +  E R ++ RVRN+V AL+ VY  V P  I++VY AS+      KDML  D +L +T   R
Sbjct:   29 HVVVTPGEVITTEPGFLRGHGVHM---------RGEE-LVASVAGIVERVNKLVSVRPLNARYTGEVGDVIVGRVREVGTRRWTVDINARQDAVLMLSSVNLSGGVQRRRTTEDQMNMRAYYEEHDLISADVHSMFADGAVSLHARSLKFGKLENGAFIAVPHALIKRLKQHFVALPCGVDVILGCNGFVWISEALSRAEGRYDDEAKTGLADAVEARKEYAAARVVSAEGRLRMARVRNAVAALAAVYTVVSPQTIMDVYGASVEMRLEPKDMLNPDYLLDLTATAR 306          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A067C1K3_SAPPC (Ribosomal RNA-processing protein 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1K3_SAPPC)

HSP 1 Score: 295 bits (754), Expect = 7.930e-97
Identity = 149/263 (56.65%), Postives = 198/263 (75.29%), Query Frame = 0
Query:    3 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVY 265
            A + +V PG+ IT+EPGF+RGHGTY+        E G+  L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+ VQP+L+KRLKQH + LP G+DVILG NG+IWI R IE  A S + ++S   A+V  +++  HA+TP     R+KI  V N +  L+  +  + P++I+E+Y
Sbjct:    6 AQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIAVQPALVKRLKQHMLQLPIGIDVILGCNGYIWIARRIEHDAESLTTNESR--ADVWTERKATHAATPTDAADRKKIAAVYNVLSTLNAQFKTITPESIMELY 256          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A1V9YVZ5_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVZ5_9STRA)

HSP 1 Score: 294 bits (752), Expect = 3.010e-96
Identity = 148/264 (56.06%), Postives = 200/264 (75.76%), Query Frame = 0
Query:    3 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 266
            A + +V PG+ I++EPGF+RGHGTY+        E G+  L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+ VQP+L+KRLKQH + LP G+DVILG NG+IWI+RSIE  + S + ++S   A+V  +++  HA TP     R+ I +V N +  L+  +  + P++I+E+YN
Sbjct:   27 ATYVVVTPGQVISSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEECELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIVVQPALVKRLKQHMLQLPIGIDVILGCNGYIWISRSIEHDSESLTTNESR--ADVWTERKATHAQTPTSAIDRKTIAKVYNVISTLNANFKTITPESIMEMYN 278          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A6G0WPF3_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPF3_9STRA)

HSP 1 Score: 286 bits (733), Expect = 2.280e-93
Identity = 146/264 (55.30%), Postives = 198/264 (75.00%), Query Frame = 0
Query:    3 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 266
            + + +V PG+ IT+EPGF+RGHGTY+        E G+  L+A+VAG+VE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLP G QR RT EDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+TVQPSLIKRLKQH + LP GVDVILG NG++WI RS+      +  + +A   +   +++QVHA+T      R+KI RV N++ AL+  +  + P++I+E+Y+
Sbjct:   26 SQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGIVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGNKRWKVDINGQQDAVLMLSSVNLPSGAQRRRTTEDQLQMRSFFEEGELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLIKRLKQHMVQLPIGVDVILGCNGYLWIMRSMNHETDGTQNEFTA---DTWTERKQVHATTVTDVLDRQKIARVYNALAALNSAFRLISPESIMEMYD 276          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A8K1FMX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMX9_PYTOL)

HSP 1 Score: 285 bits (729), Expect = 1.410e-92
Identity = 148/266 (55.64%), Postives = 195/266 (73.31%), Query Frame = 0
Query:    7 IVVPGETITAEPG-FIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSIEQGAASSSADDSAP-----LAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVY 265
            +V PGE I+ E G F+RGHGTYM++            L+A+VAGVVE+VN+LI+VRP+ SRYIGEVGD+VVGRIT +G KRW VD++  + A LMLSSVNLPGG QR RTYEDQLQMR+F+ E+DLISAE+Q +  DGS+SLHTRSL+YGKLENG  V VQPSL+KR+KQH +TL   GVD+ILGTNG+IWITRS+         +D+ P       EVL ++RQVHA+T +  + R K+ RV  ++  L++ +  + P++I+ +Y
Sbjct:   34 VVTPGEVISTETGAFLRGHGTYMSN----------NELIASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRITEVGKKRWKVDVNGQQDASLMLSSVNLPGGAQRRRTYEDQLQMRNFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVQVQPSLVKRMKQHMVTLSSIGVDLILGTNGYIWITRSMSALGLDDQMEDTGPGNMETRVEVLMEKRQVHANTKLDVDDRVKVARVYRAILQLNEQFRMITPESILSLY 289          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A2D4BZY9_PYTIN (Ribosomal RNA-processing protein 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZY9_PYTIN)

HSP 1 Score: 283 bits (725), Expect = 6.080e-92
Identity = 157/280 (56.07%), Postives = 203/280 (72.50%), Query Frame = 0
Query:    7 IVVPGETITAEPG-FIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSIE--QGAAS-SSADDSAP-----LAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAK 276
            +V PGE I+ E G F+RGHGTY+++            LVA+VAGVVE+VN+LI+VRP+ SRYIGEVGD+VVGR+T +G KRW VD++  + A LMLSSV LPGG QR RTYEDQLQMRSF+ E+DLISAE+Q +  DGS+SLHTRSL+YGKLENG  V V+PSL+KR+KQH +TLP  GVDVILGTNG++WI+RS+    G    +S +D+ P       EVL  +RQ HA+T +  E REKI RV  +V  L++ +  + PD+I+ VY+  L+R  A K
Sbjct:   30 VVTPGEVISTETGAFLRGHGTYLSN----------NELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGNKRWKVDVNGQQDAGLMLSSVTLPGGAQRRRTYEDQLQMRSFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVRPSLVKRMKQHMVTLPTLGVDVILGTNGYLWISRSLSALDGVDDVASTEDTGPGSMETRVEVLTHKRQRHAATKMSHEDREKIARVYRAVLQLNEQFRVITPDSILAVYH-ELARQDAEK 298          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: D8LIC3_ECTSI (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC3_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 3.940e-91
Identity = 151/237 (63.71%), Postives = 185/237 (78.06%), Query Frame = 0
Query:    1 NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSI-------EQGAASSSADDSAPLAEVLQQQRQVHAST 229
            + A H IVVPG+ IT+  G++RGHGTY+    E+  + G   L+A VAGVVERVNKLISVRPIKSRYIGEVGDLVVGR+T +  KRWSV++ +++SA+LMLSSVNLPGG QR+RTYEDQLQMRSF+QE DLISAEVQ + SDG ++LHTRSLKYGKLENG LV+V P LI+RLKQH ++LP  GVDVILGTNG +WI+R+        E+G A+ +    AP AE L +QR+ HA T
Sbjct:    2 SAAGHIIVVPGQEITSVQGYLRGHGTYV----EEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVTEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRMRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGS-VAPKAETLTRQRKQHAET 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMW4_9STRA6.300e-11362.20Ribosomal RNA-processing protein 4 n=1 Tax=Tribone... [more]
A0A6H5KMR3_9PHAE2.220e-11159.80Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
A0A1V9YN11_9STRA2.040e-9957.20Ribosomal RNA-processing protein 4 n=1 Tax=Achlya ... [more]
A0A7S1CHY9_9STRA7.680e-9751.39Ribosomal RNA-processing protein 4 (Fragment) n=1 ... [more]
A0A067C1K3_SAPPC7.930e-9756.65Ribosomal RNA-processing protein 4 n=2 Tax=Saprole... [more]
A0A1V9YVZ5_9STRA3.010e-9656.06Ribosomal RNA-processing protein 4 n=1 Tax=Thraust... [more]
A0A6G0WPF3_9STRA2.280e-9355.30Ribosomal RNA-processing protein 4 n=1 Tax=Aphanom... [more]
A0A8K1FMX9_PYTOL1.410e-9255.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BZY9_PYTIN6.080e-9256.07Ribosomal RNA-processing protein 4 n=1 Tax=Pythium... [more]
D8LIC3_ECTSI3.940e-9163.71Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 6..67
e-value: 8.3E-24
score: 84.9
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 5..282
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 66..157
e-value: 4.41898E-37
score: 124.969
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 6..65
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 7..54
e-value: 3.2E-13
score: 49.2
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 68..158
e-value: 1.5E-19
score: 71.8
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 65..157
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 160..199
e-value: 4.1E-11
score: 43.2
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 5..282
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 159..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig884contigH-akashiwo_Contig884:17676..18557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig884.3.1mRNA_H-akashiwo_Contig884.3.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig884 17676..18557 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig884.3.1 ID=prot_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=294bp
NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGV
VERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILM
LSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTR
SLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSI
EQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALS
QVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSITEGLRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR012340NA-bd_OB-fold
IPR004088KH_dom_type_1
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR036612KH_dom_type_1_sf