prot_H-akashiwo_Contig876.6.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig876.6.1
Unique Nameprot_H-akashiwo_Contig876.6.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length48
Homology
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BLAST of mRNA_H-akashiwo_Contig876.6.1 vs. uniprot
Match: A0A7S3USZ5_HETAK (Methenyltetrahydrofolate synthase domain-containing protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USZ5_HETAK)

HSP 1 Score: 98.6 bits (244), Expect = 1.800e-23
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:    1 TNLPYKASTKDLQEHFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW 47
            TNLPYKASTKDLQ+HFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW
Sbjct:  295 TNLPYKASTKDLQDHFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig876.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3USZ5_HETAK1.800e-2397.87Methenyltetrahydrofolate synthase domain-containin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 1..31
e-value: 3.0E-5
score: 23.8
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..42
e-value: 1.2E-6
score: 30.5
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 1..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig876contigH-akashiwo_Contig876:276245..276670 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig876.6.1mRNA_H-akashiwo_Contig876.6.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig876 276245..276786 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig876.6.1 ID=prot_H-akashiwo_Contig876.6.1|Name=mRNA_H-akashiwo_Contig876.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
TNLPYKASTKDLQEHFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf