prot_H-akashiwo_Contig863.4.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig863.4.1
Unique Nameprot_H-akashiwo_Contig863.4.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length112
Homology
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BLAST of mRNA_H-akashiwo_Contig863.4.1 vs. uniprot
Match: A0A835YUL6_9STRA (Smr domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUL6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.290e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:   30 RHRADRAWHDPASGPLQVITGQGRNSEDGVAVIKPAVLELLNTDLGIKAD----------------VMRYNQGCIELSKAQLTKWVK 100
            R  + R +HDPA+ P+ +ITG GR SE+GVAVIKPA+L++LN +L I A+                V ++N GC+E+    L  W +
Sbjct:  243 RQPSGRPFHDPAA-PMHIITGVGRRSEEGVAVIKPAILDMLNVELQIPAEXXXXXXXXXXXXXXXXVQKHNPGCVEIQPQHLQAWAR 328
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BLAST of mRNA_H-akashiwo_Contig863.4.1 vs. uniprot
Match: D7G4J1_ECTSI (Smr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4J1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.910e-8
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:   46 QVITGQGRNSEDGVAVIKPAVLELLNTDLGIKADVMRYNQGCIELSKAQLTKWVKETQQKASS 108
            ++ITG G NS+D  A+IKPAV+ELL  DLG++ +  + N+GC+EL  A L  +++    KAS+
Sbjct:  237 RIITGMGNNSKDREAIIKPAVVELLE-DLGLRPEFQQRNEGCVELKPANLEAYIRRQVTKASA 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig863.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YUL6_9STRA4.290e-1140.23Smr domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G4J1_ECTSI1.910e-846.03Smr domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036063Smr domain superfamilyGENE3D3.30.1370.110coord: 1..92
e-value: 1.7E-9
score: 39.8
IPR036063Smr domain superfamilySUPERFAMILY160443SMR domain-likecoord: 40..88
IPR002625Smr domainPROSITEPS50828SMRcoord: 1..91
score: 8.571985

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig863contigH-akashiwo_Contig863:204227..215768 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig863.4.1mRNA_H-akashiwo_Contig863.4.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig863 204183..218489 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig863.4.1 ID=prot_H-akashiwo_Contig863.4.1|Name=mRNA_H-akashiwo_Contig863.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=112bp
MTSALAVAAVRSRWRTCCSAPRVFPIPPSRHRADRAWHDPASGPLQVITG
QGRNSEDGVAVIKPAVLELLNTDLGIKADVMRYNQGCIELSKAQLTKWVK
ETQQKASSIGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036063Smr_dom_sf
IPR002625Smr_dom