prot_H-akashiwo_Contig846.1.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig846.1.1
Unique Nameprot_H-akashiwo_Contig846.1.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length55
Homology
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A7S3XT50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT50_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 3.650e-24
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 MSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            MS EQ D AR+TIQEMI++GV+R SKSPYASCTV+VRKPDG WRCCIDFRRLNA
Sbjct:   70 MSPEQLDVARETIQEMIDLGVVRKSKSPYASCTVIVRKPDGAWRCCIDFRRLNA 123          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: UPI00145835C2 (uncharacterized protein LOC117317109 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145835C2)

HSP 1 Score: 68.6 bits (166), Expect = 3.830e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   13 IQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            ++ M+E+GVIRPSKSPYAS  VLV+KPD T R CIDFRRLNA
Sbjct:  491 VKSMLEMGVIRPSKSPYASPVVLVKKPDNTTRFCIDFRRLNA 532          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: UPI000904D3F5 (uncharacterized protein LOC109221637 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904D3F5)

HSP 1 Score: 67.4 bits (163), Expect = 9.810e-12
Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:    5 QRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            Q+D+    I+EM++ GVIRPS SPY+S  V+V+K DGTWR CID+R+LN+
Sbjct:  699 QKDEIEKMIKEMLDSGVIRPSVSPYSSPIVMVKKKDGTWRLCIDYRQLNS 748          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A6P9EHI2_JUGRE (uncharacterized protein LOC118347680 n=1 Tax=Juglans regia TaxID=51240 RepID=A0A6P9EHI2_JUGRE)

HSP 1 Score: 67.4 bits (163), Expect = 9.810e-12
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:    5 QRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            Q+++    +QE++E GVIRPS+SPY+S  +LVRK DGTWR C+D+R LN+
Sbjct:  540 QKEEIEKIVQELMESGVIRPSQSPYSSPCLLVRKADGTWRLCVDYRALNS 589          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: UPI000D097A2B (uncharacterized protein LOC112184282 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D097A2B)

HSP 1 Score: 67.4 bits (163), Expect = 9.830e-12
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:    5 QRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            Q+++    IQE++E+G+IRPS SPY+S  +LV+K DG+WR C+D+R LNA
Sbjct:  933 QKEEIEKIIQELLEVGIIRPSVSPYSSPVLLVKKKDGSWRLCVDYRSLNA 982          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A0R0LXY7_9MICR (Putative LTR transposable element (Fragment) n=2 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LXY7_9MICR)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-11
Identity = 29/53 (54.72%), Postives = 38/53 (71.70%), Query Frame = 0
Query:    2 SEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            S EQ D   + IQ+ +E+G+IR S S YAS  +LVRK DG WR C+D+R+LNA
Sbjct:   42 SPEQNDIITNQIQKWLELGIIRHSNSKYASPVILVRKKDGGWRLCVDYRKLNA 94          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A2K3MLW1_TRIPR (Retrotrans_gag domain-containing protein n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MLW1_TRIPR)

HSP 1 Score: 67.0 bits (162), Expect = 1.330e-11
Identity = 27/42 (64.29%), Postives = 36/42 (85.71%), Query Frame = 0
Query:   13 IQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            I EM++ G+IRPS+SP++S  +LV+K DGTWRCCID+R LNA
Sbjct:  560 IAEMLQTGMIRPSRSPFSSPVLLVKKKDGTWRCCIDYRALNA 601          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A833XH35_JUGRE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Juglans regia TaxID=51240 RepID=A0A833XH35_JUGRE)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 0
Query:    5 QRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLN 53
            Q D+    I+E++E GVIRPS+SPY+S  +LVRK DGTWR C+D+R LN
Sbjct:  594 QNDEIEKIIKELLESGVIRPSQSPYSSPVLLVRKADGTWRLCVDYRALN 642          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: UPI001967F511 (uncharacterized protein LOC112421302 n=1 Tax=Medicago truncatula TaxID=3880 RepID=UPI001967F511)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    5 QRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            Q++Q    +Q+M+E G+I+PS SP++S  +LV+K DGTWRCC D+R LNA
Sbjct:  633 QKEQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNA 682          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A396IDV6_MEDTR (Putative nucleotidyltransferase, Ribonuclease H n=1 Tax=Medicago truncatula TaxID=3880 RepID=A0A396IDV6_MEDTR)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-11
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:    5 QRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA 54
            Q++Q    +Q+M+E G+I+PS SP++S  +LV+K DGTWRCC D+R LNA
Sbjct:  633 QKEQIEKMVQDMLEEGIIQPSLSPFSSPIILVKKKDGTWRCCTDYRALNA 682          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XT50_HETAK3.650e-2481.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI00145835C23.830e-1273.81uncharacterized protein LOC117317109 n=1 Tax=Pecte... [more]
UPI000904D3F59.810e-1258.00uncharacterized protein LOC109221637 n=1 Tax=Nicot... [more]
A0A6P9EHI2_JUGRE9.810e-1256.00uncharacterized protein LOC118347680 n=1 Tax=Jugla... [more]
UPI000D097A2B9.830e-1254.00uncharacterized protein LOC112184282 n=1 Tax=Rosa ... [more]
A0A0R0LXY7_9MICR1.200e-1154.72Putative LTR transposable element (Fragment) n=2 T... [more]
A0A2K3MLW1_TRIPR1.330e-1164.29Retrotrans_gag domain-containing protein n=2 Tax=T... [more]
A0A833XH35_JUGRE1.340e-1159.18Reverse transcriptase domain-containing protein (F... [more]
UPI001967F5111.340e-1154.00uncharacterized protein LOC112421302 n=1 Tax=Medic... [more]
A0A396IDV6_MEDTR1.340e-1154.00Putative nucleotidyltransferase, Ribonuclease H n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 1..54
e-value: 3.6E-19
score: 70.8
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 1..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig846contigH-akashiwo_Contig846:93665..93829 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig846.1.1mRNA_H-akashiwo_Contig846.1.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig846 93331..93889 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig846.1.1 ID=prot_H-akashiwo_Contig846.1.1|Name=mRNA_H-akashiwo_Contig846.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
MSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFR
RLNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043502DNA/RNA_pol_sf