mRNA_H-akashiwo_Contig992.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig992.5.1
Unique NamemRNA_H-akashiwo_Contig992.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S4D5A2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5A2_HETAK)

HSP 1 Score: 228 bits (582), Expect = 3.310e-74
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 2 
Query:  200 MICRQFRPTAATRHTIAKKIRLFESTPYRCALFSTQQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALAQDP 550
            MICRQFRPTAATRHTIAKKIRLFEST YRCALFSTQQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALA+DP
Sbjct:    1 MICRQFRPTAATRHTIAKKIRLFESTSYRCALFSTQQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALARDP 117
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S4D5D5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5D5_HETAK)

HSP 1 Score: 120 bits (302), Expect = 1.170e-30
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 2 
Query:  317 RKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALAQDP 550
            R VALQLDYY SAQ+AGVAVAERQGLY  RG+ L +LPDC VG EA SVR +QDAHPEALAVGT EQNVLVP LA+DP
Sbjct:   43 RPVALQLDYYLSAQFAGVAVAERQGLYAARGVRLALLPDCPVGEEAGSVRAHQDAHPEALAVGTVEQNVLVPVLAKDP 120
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S3XQR9_HETAK (Thiamine pyrimidine synthase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQR9_HETAK)

HSP 1 Score: 120 bits (302), Expect = 6.920e-30
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 2 
Query:  317 RKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALAQDP 550
            R VALQLDYY SAQ+AGVAVAERQGLY  RG+ L +LPDC VG EA SVR +QDAHPEALAVGT EQNVLVP LA+DP
Sbjct:   43 RPVALQLDYYLSAQFAGVAVAERQGLYAARGVRLALLPDCPVGEEAGSVRAHQDAHPEALAVGTVEQNVLVPVLAKDP 120
[Close]
BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S2UD29_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD29_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.640e-16
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 2 
Query:  233 TRHTIAKKIRLFESTPYRCALFSTQQSTR-----KVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALAQDP 550
            TR T+ ++     S     +L ST +  R      +A+QLDYY S Q+AGVA A     Y  +GL++  LP C VGTE  +VR +QDA+P    VGT EQN+ VP LA DP
Sbjct:   41 TRATLRERTTSIHSNRVVKSLCSTTKGKRFQHDDALAVQLDYYMSPQFAGVASALVNNSYGSKGLDISFLPTCPVGTEQANVRRHQDANPGGTTVGTVEQNIFVPTLAADP 151
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S2LEC8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LEC8_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 1.810e-13
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  290 ALFSTQQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVRE-YQDAHPEALAVGTAEQNVLVPAL 538
            AL    +  R VA+QLDYY S+Q+AGVAVA  +GLY++ GL++ +LP C  G EA  V + ++     AL VGT EQN L+PA+
Sbjct:   21 ALRKMSRIARHVAVQLDYYMSSQFAGVAVALERGLYSKAGLDVRLLPKCTPGQEANVVSDGFKRERGAALFVGTMEQNTLLPAI 104
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S3V3R4_9STRA (Thiamine pyrimidine synthase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V3R4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.720e-13
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 2 
Query:  299 STQQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALAQDP 550
            S++++   VALQLDYY S Q+AG+A A     Y + G++L  LP C VG E + VR +Q+  P +++VG+ EQN+ +P L ++P
Sbjct:   28 SSKRNAHSVALQLDYYMSPQFAGIASAVVNQTYVDAGIDLAFLPICPVGLEQECVRIHQNKSPSSVSVGSVEQNIFIPTLFRNP 111
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A448Z6D7_9STRA (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6D7_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.000e-13
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  305 QQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHP-EALAVGTAEQNVLVPALAQDP 550
            ++S   V+LQLDYY S Q+AG+A A   GLY + G++L  LP C VG E + VR+++DAHP +   VG+ EQN+  P L + P
Sbjct:   27 RRSKSTVSLQLDYYMSPQFAGIACAMVDGLYNDAGIDLRFLPICPVGLELERVRQHRDAHPTDDAVVGSVEQNIFAPLLHERP 109
[Close]
BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: K0RCN9_THAOC (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RCN9_THAOC)

HSP 1 Score: 76.6 bits (187), Expect = 5.210e-13
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2 
Query:  302 TQQSTRKVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALA-VGTAEQNVLVPALAQDP 550
            +  S+  VA+QLDY+ S Q+AGVA A   G+YT  G+E   LP C VG E  +VR YQDA+P  L  +G+ EQN+  P L  +P
Sbjct:   27 SSSSSPDVAVQLDYFMSHQFAGVATALVDGIYTSNGIEPHFLPTCPVGREMANVRAYQDANPSTLVTLGSVEQNIFTPLLYSNP 110
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BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A7S1ZZN9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZN9_TRICV)

HSP 1 Score: 75.1 bits (183), Expect = 9.210e-13
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 2 
Query:  323 VALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPALAQDP 550
            ++LQLDYY S Q+AGVA A     Y  +G+ +  LP C VG E  +VR++QDA+P  + +GT EQN+  P LA +P
Sbjct:   43 LSLQLDYYMSPQFAGVASALVNDSYASKGINISFLPTCPVGEEQANVRKHQDANPSDVTMGTVEQNIFSPTLAANP 118
[Close]
BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Match: A0A813CP73_9DINO (Hypothetical protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813CP73_9DINO)

HSP 1 Score: 73.6 bits (179), Expect = 1.660e-12
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2 
Query:  320 KVALQLDYYYSAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALAVGTAEQNVLVPA 535
            ++A+QLDYY SAQ+AG+A+A R+G+Y + GL++ +LP CH G EA  V E        L VG+ EQN L+PA
Sbjct:   11 QIAVQLDYYMSAQFAGIALACRRGIYEKAGLKVKLLPSCHPGDEAAKVCEGFSKDASKLHVGSMEQNTLIPA 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig992.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D5A2_HETAK3.310e-7498.29Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D5D5_HETAK1.170e-3078.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XQR9_HETAK6.920e-3078.21Thiamine pyrimidine synthase (Fragment) n=1 Tax=He... [more]
A0A7S2UD29_9STRA4.640e-1644.14Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2LEC8_9DINO1.810e-1348.81Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S3V3R4_9STRA2.720e-1342.86Thiamine pyrimidine synthase n=1 Tax=Chaetoceros d... [more]
A0A448Z6D7_9STRA3.000e-1346.994a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
K0RCN9_THAOC5.210e-1347.624a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7S1ZZN9_TRICV9.210e-1347.37Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A813CP73_9DINO1.660e-1250.00Hypothetical protein n=3 Tax=Symbiodinium TaxID=29... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig992contigH-akashiwo_Contig992:419350..420196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0RCN9
PFAMsTHF_DHG_CYH,THF_DHG_CYH_C
Model size550
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons3
Evalue1.04e-14
EggNOG OGsCOG0190@1|root,KOG0089@2759|Eukaryota
Descriptionmethenyltetrahydrofolate cyclohydrolase activity
Cds size351
COG categoryH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388069.9279318-CDS-H-akashiwo_Contig992:419349..4194231681388069.9279318-CDS-H-akashiwo_Contig992:419349..419423Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig992 419350..419423 -
1681388069.942993-CDS-H-akashiwo_Contig992:419611..4198141681388069.942993-CDS-H-akashiwo_Contig992:419611..419814Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig992 419612..419814 -
1681388069.9535663-CDS-H-akashiwo_Contig992:419923..4199971681388069.9535663-CDS-H-akashiwo_Contig992:419923..419997Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig992 419924..419997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388069.9614472-UTR-H-akashiwo_Contig992:419997..4201961681388069.9614472-UTR-H-akashiwo_Contig992:419997..420196Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig992 419998..420196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig992.5.1prot_H-akashiwo_Contig992.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig992 419350..419997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig992.5.1

>prot_H-akashiwo_Contig992.5.1 ID=prot_H-akashiwo_Contig992.5.1|Name=mRNA_H-akashiwo_Contig992.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MICRQFRPTAATRHTIAKKIRLFESTPYRCALFSTQQSTRKVALQLDYYY
SAQYAGVAVAERQGLYTERGLELIVLPDCHVGTEAKSVREYQDAHPEALA
VGTAEQNVLVPALAQDP
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mRNA from alignment at H-akashiwo_Contig992:419350..420196-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig992.5.1 ID=mRNA_H-akashiwo_Contig992.5.1|Name=mRNA_H-akashiwo_Contig992.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=847bp|location=Sequence derived from alignment at H-akashiwo_Contig992:419350..420196- (Heterosigma akashiwo CCMP452)
TTCACCACTCTACACTCTCTCTAGCTGCTGGTAGAAAGTGATCCACTGTA
TTGTATATTTTTATCTATACACTCCTCAAAAGTAAGCGTACAGAAGTCGT
GTATCTGGTTTTCGTCTTTCTCTTTTTCCAGCTGCGATTCCTTTCCAAGG
TTTCTTTCAATCGCAGTTTCTTTGCCGAGAAACCTAACCTGAGCCAGTTA
TGATTTGCAGACAATTCCGGCCCACCGCCGCCACCAGGCATACGATAGCA
AAAAAGATTCGTCTCTTTGAAAGGTAATAGCAGAGAATCCTTGTTTTGAG
CATCAATTTAGTTATGTGTAGGCTTTTTATTGAACACAAAAAGGGACACC
CGGTCCCTTTCTGGTTGCTACTTTTCACGTAGTACTCCGTACAGATGCGC
GCTGTTCAGCACCCAGCAATCCACGCGGAAAGTGGCCTTGCAGCTGGACT
ACTACTACTCCGCGCAGTACGCAGGCGTGGCCGTGGCCGAGCGCCAGGGG
CTGTACACTGAGAGAGGGCTGGAGCTGATTGTCCTGCCTGACTGCCACGT
GGGCACCGAGGCAAAGAGTGTCCGCGAGTACCAAGGTGGGCTCTCATATG
CCCTACCCACTACCACTCATCAGGGCCTGTCCCTTTTATCGTGATCCACT
ACCACTCGTCTGGGCCCTTACCTTTTGGCGGCTTCGTCCAGGTGCATCAC
CCAACAGCACCACCGCCTTCTCATCTTCCGCGCACAGAAGACACAGGCAC
GCCCCCCCCCATCCCCCCTTCAGACGCCCACCCCGAGGCGCTGGCGGTGG
GCACCGCGGAGCAGAACGTGCTGGTGCCCGCGCTGGCCCAGGACCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig992:419350..420196-

>mRNA_H-akashiwo_Contig992.5.1 ID=mRNA_H-akashiwo_Contig992.5.1|Name=mRNA_H-akashiwo_Contig992.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig992:419350..420196- (Heterosigma akashiwo CCMP452)
ATGATTTGCAGACAATTCCGGCCCACCGCCGCCACCAGGCATACGATAGC
AAAAAAGATTCGTCTCTTTGAAAGTACTCCGTACAGATGCGCGCTGTTCA
GCACCCAGCAATCCACGCGGAAAGTGGCCTTGCAGCTGGACTACTACTAC
TCCGCGCAGTACGCAGGCGTGGCCGTGGCCGAGCGCCAGGGGCTGTACAC
TGAGAGAGGGCTGGAGCTGATTGTCCTGCCTGACTGCCACGTGGGCACCG
AGGCAAAGAGTGTCCGCGAGTACCAAGACGCCCACCCCGAGGCGCTGGCG
GTGGGCACCGCGGAGCAGAACGTGCTGGTGCCCGCGCTGGCCCAGGACCC
C
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