mRNA_H-akashiwo_Contig991.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig991.4.1
Unique NamemRNA_H-akashiwo_Contig991.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: A0A6V1V4J2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V4J2_HETAK)

HSP 1 Score: 457 bits (1175), Expect = 2.260e-158
Identity = 224/243 (92.18%), Postives = 229/243 (94.24%), Query Frame = 1
Query:    1 LEVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGV-VEEXXXXXXDKPTIFSPFM 726
            LEVVRQKLEED+TL ERTPWSPAQIVELLEICLETHF TIDGRIFTQSDGTPIGKSISGPIA IYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL SHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKE HTF YLHW S+HPKKTKLGVMKCLIHRAHRLCD+EEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGV VEE      DKPTIF+PF+
Sbjct:  155 LEVVRQKLEEDETLPERTPWSPAQIVELLEICLETHFKTIDGRIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKETHTFRYLHWRSNHPKKTKLGVMKCLIHRAHRLCDREEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVEVEEEE----DKPTIFAPFV 393          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: A0A7S4DDA1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDA1_HETAK)

HSP 1 Score: 231 bits (589), Expect = 3.050e-67
Identity = 126/334 (37.72%), Postives = 192/334 (57.49%), Query Frame = 1
Query:    1 LEVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRC---KHKPTLWVRMRDDVFIIWDHGEEKLQEL*S-HVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVE--------------EXXXXXXDKPTIFSPFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQHQ 948
            LEV+ +KL++D+TL +RT   P QI+ LL +C+ETHF  IDG I+TQ+DG PIGKSISG IA IY+  +EE+ + +++    K +P  W R +DDV ++W  G E+       ++N +E+RIQ++ E E +G L  LD+   RVG  + T +YRK  HT  +    ++ P+K  LG +K L++RA RL D EEDL  E+  L D FI  G+ V EVD    +Y+  +                E       +  I S ++PG S+   + ++ + V++VF +  +L S + N+K  R   ++K V+YK+ C  C   YIGET + +  R  +HQ
Sbjct:  219 LEVIYRKLQKDRTLKDRTDLKPRQIITLLRVCMETHFKDIDGDIWTQTDGCPIGKSISGVIAGIYMADYEERHVLNNKQLPPKWRPKFWKRQKDDVIVVWPSGAEEFDNFRKEYLNTREERIQWSGEFEVDGKLNVLDMVCMRVGRGIRTKIYRKPTHTLKFASVRTNRPRKEALGSLKGLVNRAVRLTDSEEDLAEEIKLLSDAFIVEGFAVEEVDTTVENYLAKIRSKESKEGDQTQVADGECQQEEEKRHVITSLYVPGVSDKLRRQLKGYNVDLVFKRGQTLGSLISNVKEKRTPERQKGVIYKIPCKHCEECYIGETKRHWGTRKGEHQ 552          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: A0A7S3XWS7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWS7_HETAK)

HSP 1 Score: 199 bits (507), Expect = 4.120e-61
Identity = 94/123 (76.42%), Postives = 108/123 (87.80%), Query Frame = 1
Query:    1 LEVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTME 369
            +E+VRQKLEE++TLS+RTPWSPAQI+EL EICLETHF TI GRIF+Q  GTPIGKSISGPIA IYLNWF+E+FIYS+RCK+KPTLW RMR     IWDHGEEKLQEL  HVN QE+R+QFT+E
Sbjct:    1 MEIVRQKLEEEETLSQRTPWSPAQIIELWEICLETHFKTIYGRIFSQPGGTPIGKSISGPIAGIYLNWFDEEFIYSERCKNKPTLWKRMRG----IWDHGEEKLQELLGHVNEQEERVQFTIE 119          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: UPI001C91F7F2 (uncharacterized protein LOC122370714 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C91F7F2)

HSP 1 Score: 201 bits (510), Expect = 2.560e-57
Identity = 114/316 (36.08%), Postives = 175/316 (55.38%), Query Frame = 1
Query:    1 LEVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVEEXXXXXXDKPTIFS-PFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQH 945
            ++V+  KL ED TL ER+      I +L+  CLE  +    G  + Q +G P+G S+S  +A  Y+   E+  + S   K  PTLW R  DD FI+W HG+E LQE    +N     IQFT+ERE +  L FLD+ ++R   ++ TSVYRK   +  YL ++SSHP   K G+++C+  RA R+C     ++ E   ++D F++NGYP   + R           +      D+    + P++PG SE  AK++R H ++V   K   L+  L N+K+P ++ ++K  VY++ C  CG SYIGE+ +   DR K+H
Sbjct:  104 VDVICDKLAEDDTLFERSEIGVDSIRKLMLACLECRYFLCLGAFYEQKEGAPMGLSLSVVLANAYMEHLEQSILTSATLK--PTLWRRYVDDTFILWPHGDEALQEFHQRLNDFCPSIQFTLEREVDQKLPFLDVLVQRSEGRLGTSVYRKATASNVYLKYNSSHPAAMKAGLIRCMEARARRVCSDMSSVKEEKSKIRDVFVANGYPEPFIKRAMRRRDASQTVQGEAAARDQEAYAAVPYVPGLSERIAKVLRPHRIKVAH-KSKRLRGHLVNVKDPVEQSKKKGAVYEIKCS-CGSSYIGESGRPKQDRLKEH 415          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: UPI001BB2C68D (uncharacterized protein LOC121430263 n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB2C68D)

HSP 1 Score: 190 bits (482), Expect = 3.310e-51
Identity = 110/315 (34.92%), Postives = 165/315 (52.38%), Query Frame = 1
Query:    4 EVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGE-KVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVEEXXXXXXDKPTIFSPFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQH 945
            +V  Q+LE D +L +RT  SP Q+ ELL   L++ +   DGR + Q +G  +G  +S  IA +Y+  FEE  +++   +  P +W R  DD FI+ D        L ++VN Q+  I+FTMERE N  +AFLD  + R  E ++ T+VYRK  HT  YL + S HP+  K GV+KCL  RA R+  + +    E   +    +SNGYP   ++RV       V EE       K T+  PF+   S    + +  + +  VF    +++ +L   K+P    +   VVYK+ CG C   YIGET +   +R  +H
Sbjct:  259 DVALQRLEADASLPDRTDLSPTQVTELLRFVLKSTYFMYDGRFYEQQEGAAMGSPVSAVIANLYMESFEEDALHACPPEFSPRIWKRYVDDTFIVTDRSTTDC--LLNYVNAQQPSIRFTMEREDNNRIAFLDTLVHRDDEGRLTTTVYRKPTHTDQYLAYDSHHPQSVKRGVVKCLYDRASRIVSKPQCTAAEKQRIASALVSNGYPRSFLNRVTKR--KNVAEEDIVRC--KSTVVLPFVDSISRQLRRHLEKYSIRAVFKSDTTIRKQLVRPKDPALPGRLDGVVYKIPCGACDKVYIGETGRPVNERMLEH 567          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: UPI001BB23F7E (uncharacterized protein LOC121414914 n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB23F7E)

HSP 1 Score: 176 bits (447), Expect = 2.800e-48
Identity = 103/301 (34.22%), Postives = 158/301 (52.49%), Query Frame = 1
Query:   16 QKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTMEREKNGVLAFLDLKMER-VGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVEEXXXXXXDKPTIFSPFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETA 915
            Q+++ D TLSERT   P QI +LL+  L + +    G  + Q++G  +G  +S  +A +Y+  FE+  +       +P +W R  DD FII ++ E     L +++N Q+  IQFT+E E+ G LAFLD+ ++R  G K+ TSVYRK  HT  Y+ + S H K  K G++KCL  RA R+     +L  E   ++    SNGYP R +   F    P   ++          +F   + G S+   + +  HG+  VF    ++  +L + K+P    +R  VVY + C  C  SYIGETA
Sbjct:  146 QRMQSDPTLSERTTLMPEQIADLLKFVLRSTYFLYRGSFYEQTEGAAMGSPVSAVVANLYMEGFEQNALPKCPSTCRPRVWKRYVDDTFIIVNNSEA--DSLLAYMNSQQPSIQFTLETEQGGKLAFLDMLVQRHEGGKLSTSVYRKPTHTDLYIPYDSHHDKSVKKGLVKCLFDRAARIITHPPELPKERAHIRVPLYSNGYPRRFIKNTFKKKQPPRDQK----------VFKN-IDGLSQQLKRRLEGHGIRTVFRSDTTIHKQLVHPKDPIPDHRRDGVVYNIPCQGCDGSYIGETA 433          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: A0A1B6GFD0_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6GFD0_9HEMI)

HSP 1 Score: 173 bits (439), Expect = 1.500e-47
Identity = 100/316 (31.65%), Postives = 163/316 (51.58%), Query Frame = 1
Query:    1 LEVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVEEXXXXXXDKPTIFS-PFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQH 945
            L+++   L ED+ L+ERT      I+ELLE+C + ++  ++G+I+ Q +G  +G  +S   A I++  FE++ +     + KP +W R  DD F+++ HG+ KL E   H+N     I+ TME E    L FLD+ + R  + + T+V++K+ HT  YL++ S+H K  K GV   L  RA  LC  ++ L+ E   ++    SNGYP   +++        ++ E      DK    S P++PG SE   ++ R + +   F    +L+  L   K        K+ VY + C  C   YIGET +    R K+H
Sbjct:    3 LKIIESCLNEDQKLNERTKLPVPVIMELLELCTQCNYFELEGKIYRQYEGMAMGSPLSPIFANIFMEEFEQKALAL--AQFKPKIWWRYVDDTFVVFPHGDTKLNEFLDHINSISPSIRLTMEVEVQNKLPFLDVCVLRDRDVLKTTVFQKKTHTGKYLNYHSNHQKSAKEGVAYSLFDRAKSLCSDKDGLKEEFKKVESDLRSNGYPQSVINK--CKRTRKIIPESVNQKSDKFAFMSIPYVPGLSEKIRRVGRKYNIRTAFKTHNTLRQSLVKTKPKNGTQDSKNCVYSIKCS-CDREYIGETKRPLNVRIKEH 313          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: L7M0W9_RHIPC (Putative tick transposon n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7M0W9_RHIPC)

HSP 1 Score: 171 bits (433), Expect = 2.050e-46
Identity = 108/315 (34.29%), Postives = 165/315 (52.38%), Query Frame = 1
Query:    1 LEVVRQKLEEDKTLSERTPWSPAQIVELLEICLETHFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQEKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVEEXXXXXXDKPTIFSPFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQH 945
            L V R+ LEED TL+ERTP S  Q+  LLE CL + + + +   F Q+ GT +G +IS  +AA+ +   E++ +       KP L+VR  DD F +   GE  +  L + +N  E  IQFT+ERE    L FLD+ + R  + +  SV+RK  HT  YLH+SS+HP   K  V++ L+ RA R+C      + E   +     +NGY    V R       G           + +I  P++ G SE  A++M+  GV+V      ++ S +   K+     + + VVY++ C +C  SY+GET + F +R +QH
Sbjct:   19 LSVTRRALEEDSTLNERTPLSVDQVCRLLEFCLSSTYFSYNNAFFKQTSGTAMGAAISATVAALVMEDVEKRAL--SVFDPKPKLFVRYVDDCFCVVKSGE--VDNLLACLNSVEPDIQFTVERENQLALPFLDVLVRRQRQSLSFSVFRKPTHTGRYLHFSSNHPACHKSSVVRSLVRRAERICSSPRQRKEERERIISDLGANGYTKAFVRRALLKSKNGGSVTPASPPRHRVSI--PYITGASEAIARIMKKAGVDVAHKPSTTIGSFIPRPKDRAPAEKAQGVVYRIPCADCPASYVGET-KNFCERMRQH 326          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: A0A5S6QH72_TRIMR (Reverse transcriptase domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QH72_TRIMR)

HSP 1 Score: 170 bits (430), Expect = 8.090e-46
Identity = 102/316 (32.28%), Postives = 172/316 (54.43%), Query Frame = 1
Query:    7 VVRQKLEEDKTLSERTPWSPAQIVELLEICLE-THFNTIDGRIFTQSDGTPIGKSISGPIAAIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQEL*SHVNGQ-EKRIQFTMEREKNGVLAFLDLKMERVGEKVVTSVYRKEMHTF*YLHWSSSHPKKTKLGVMKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGVVEEXXXXXXDKPT-IFSPFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQH 945
            ++ + L +D +L++RT  +P  +V+L++ C+E ++F    G+ ++Q  G P+G S+S  IA +++   EE+   S   +H   L+ R  DD+F I   G+E   EL +H+N     +IQFT+ERE+ G L FLD+ + + G ++ T VYRK  ++  YL++ S+HPK  K G++  ++ RA ++C +E  L+ E+ F++     N +P+R  +      +               T +  P+ PG S+     +R  GVEVVF   ++L++ L + KN     Q +  VY + C  CG  YIGET      R +QH
Sbjct:    5 LILEALSKDSSLNQRTKLNPFHLVQLVKFCMEESNFFQWRGKFYSQEKGAPMGSSLSPVIAELFMEHLEEKAFPSGLSEHNVKLFKRYVDDIFAIVKQGKE--DELLNHLNNLFPGKIQFTIEREEEGCLPFLDVLVVKEGNQLKTKVYRKATNSGKYLNFLSNHPKSVKKGIVTAMVDRATKICSREY-LQEEIDFIRQTLRKNDFPIRLTEYCIEKKLHTWRNRVLRRNAAPHTRLVIPYYPGLSDRLQMAIRKLGVEVVFKNHINLRAILRSDKNKLSAEQIQGAVYMIQCS-CGARYIGETGHTVDVRFQQH 316          
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Match: A0A7S3Y8W7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8W7_HETAK)

HSP 1 Score: 160 bits (406), Expect = 9.840e-46
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 1
Query:  721 FMPGFSENFAKLMRTHGVEVVFTKPVSLQSELCNLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQHQYCVQTEN 969
            F+PGFSENFAKLMR HGVEVVFTKPVSLQSELCNLK PRD+LQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQHQY V+TE+
Sbjct:    2 FLPGFSENFAKLMRAHGVEVVFTKPVSLQSELCNLKPPRDRLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQHQYSVRTED 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig991.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1V4J2_HETAK2.260e-15892.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDA1_HETAK3.050e-6737.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XWS7_HETAK4.120e-6176.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001C91F7F22.560e-5736.08uncharacterized protein LOC122370714 n=1 Tax=Amphi... [more]
UPI001BB2C68D3.310e-5134.92uncharacterized protein LOC121430263 n=3 Tax=Lytec... [more]
UPI001BB23F7E2.800e-4834.22uncharacterized protein LOC121414914 n=1 Tax=Lytec... [more]
A0A1B6GFD0_9HEMI1.500e-4731.65Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
L7M0W9_RHIPC2.050e-4634.29Putative tick transposon n=1 Tax=Rhipicephalus pul... [more]
A0A5S6QH72_TRIMR8.090e-4632.28Reverse transcriptase domain-containing protein n=... [more]
A0A7S3Y8W7_HETAK9.840e-4691.57Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig991contigH-akashiwo_Contig991:374232..375200 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size969
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.64e-10
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size450
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388069.780768-UTR-H-akashiwo_Contig991:374231..3747501681388069.780768-UTR-H-akashiwo_Contig991:374231..374750Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig991 374232..374750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388069.7922208-CDS-H-akashiwo_Contig991:374750..3752001681388069.7922208-CDS-H-akashiwo_Contig991:374750..375200Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig991 374751..375200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig991.4.1prot_H-akashiwo_Contig991.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig991 374751..375200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig991.4.1

>prot_H-akashiwo_Contig991.4.1 ID=prot_H-akashiwo_Contig991.4.1|Name=mRNA_H-akashiwo_Contig991.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
MKCLIHRAHRLCDQEEDLRWELGFLKDQFISNGYPVREVDRVFASYVPGV
VEEEEEEEEDKPTIFSPFMPGFSENFAKLMRTHGVEVVFTKPVSLQSELC
NLKNPRDKLQRKDVVYKVDCGECGVSYIGETAQRFTDRAKQHQYCVQTEN
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mRNA from alignment at H-akashiwo_Contig991:374232..375200+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig991.4.1 ID=mRNA_H-akashiwo_Contig991.4.1|Name=mRNA_H-akashiwo_Contig991.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=969bp|location=Sequence derived from alignment at H-akashiwo_Contig991:374232..375200+ (Heterosigma akashiwo CCMP452)
TTGGAGGTGGTGAGGCAGAAGCTAGAAGAGGATAAGACTCTGTCTGAACG GACACCATGGAGCCCAGCGCAGATTGTGGAGTTGTTGGAAATTTGCCTTG AAACTCATTTCAATACAATTGATGGGCGGATCTTCACGCAGTCTGATGGG ACTCCAATCGGCAAGTCCATCTCCGGTCCCATTGCGGCTATATATTTGAA CTGGTTCGAAGAACAGTTCATCTATAGTGACAGGTGCAAGCATAAGCCCA CCCTGTGGGTAAGGATGAGGGATGATGTGTTCATCATTTGGGACCATGGG GAGGAGAAGCTACAGGAGCTTTAGAGCCATGTGAATGGCCAGGAGAAGCG GATCCAGTTCACTATGGAGAGAGAGAAGAACGGGGTGCTTGCCTTTCTGG ACCTGAAGATGGAGAGGGTGGGGGAGAAGGTGGTGACCAGCGTGTATCGG AAGGAGATGCATACCTTTTAGTACCTGCATTGGAGCTCAAGTCATCCCAA GAAGACCAAGCTGGGGGTGATGAAGTGCCTCATCCATCGAGCTCATAGGC TGTGCGACCAGGAGGAGGATCTGAGATGGGAGTTGGGTTTTCTCAAGGAC CAGTTCATCTCAAATGGATACCCTGTACGTGAAGTGGACAGGGTGTTTGC CTCTTATGTGCCTGGGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAAGACA AGCCTACCATTTTTTCCCCTTTTATGCCTGGTTTCTCCGAAAATTTTGCC AAGCTGATGCGCACCCATGGGGTAGAGGTGGTGTTCACAAAGCCAGTGTC ATTGCAGAGTGAGCTGTGCAACCTAAAAAACCCAAGAGACAAGCTGCAGC GCAAGGATGTGGTCTACAAGGTGGATTGTGGAGAATGCGGGGTGTCCTAT ATTGGGGAGACTGCACAGCGGTTCACTGATAGGGCAAAGCAACATCAGTA TTGCGTGCAGACTGAGAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig991:374232..375200+

>mRNA_H-akashiwo_Contig991.4.1 ID=mRNA_H-akashiwo_Contig991.4.1|Name=mRNA_H-akashiwo_Contig991.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig991:374232..375200+ (Heterosigma akashiwo CCMP452)
ATGAAGTGCCTCATCCATCGAGCTCATAGGCTGTGCGACCAGGAGGAGGA
TCTGAGATGGGAGTTGGGTTTTCTCAAGGACCAGTTCATCTCAAATGGAT
ACCCTGTACGTGAAGTGGACAGGGTGTTTGCCTCTTATGTGCCTGGGGTG
GTGGAGGAGGAGGAGGAGGAGGAGGAAGACAAGCCTACCATTTTTTCCCC
TTTTATGCCTGGTTTCTCCGAAAATTTTGCCAAGCTGATGCGCACCCATG
GGGTAGAGGTGGTGTTCACAAAGCCAGTGTCATTGCAGAGTGAGCTGTGC
AACCTAAAAAACCCAAGAGACAAGCTGCAGCGCAAGGATGTGGTCTACAA
GGTGGATTGTGGAGAATGCGGGGTGTCCTATATTGGGGAGACTGCACAGC
GGTTCACTGATAGGGCAAAGCAACATCAGTATTGCGTGCAGACTGAGAAT
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