mRNA_H-akashiwo_Contig988.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig988.2.1
Unique NamemRNA_H-akashiwo_Contig988.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A0F3KI88_9GAMM (Maebl n=1 Tax=Luteibacter yeojuensis TaxID=345309 RepID=A0A0F3KI88_9GAMM)

HSP 1 Score: 109 bits (272), Expect = 2.100e-27
Identity = 52/101 (51.49%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+L+DA+N  P ++D LL EVAKYG   ++RI+GDW S  L GW+T + EH + P+ Q+ +   K  +D+A+IID MDLL++E    DGF I SSDSDFT
Sbjct:    9 LAVLVDADNARPAIVDGLLAEVAKYGTAHVKRIYGDWTSPHLNGWKTALLEHSIQPIQQFAYTSGKNATDSAMIIDAMDLLYSER--FDGFCIVSSDSDFT 107          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A534SA78_9DELT (NYN domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534SA78_9DELT)

HSP 1 Score: 109 bits (272), Expect = 2.450e-27
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDAEN    ++D LL E+AKYG   ++RI+GDW + LL+GW+  + EH + P+ Q+ +   K  SD+ALIID MDLL+TE   +DGF I SSDSDFT
Sbjct:   10 LAVLIDAENTQASIIDALLAEIAKYGVASVRRIYGDWTTTLLRGWKDVLLEHAVQPIQQFRYTVGKNASDSALIIDAMDLLYTEK--MDGFCIVSSDSDFT 108          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A535BKG9_9DELT (NYN domain-containing protein n=8 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A535BKG9_9DELT)

HSP 1 Score: 108 bits (269), Expect = 7.020e-27
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N PP ++D LL E+AKYG   ++RI+GDW +  L+GW+  + E  + P+ Q+ +   K  +D+ALIID MDLL+TE   LDGF I SSDSDFT
Sbjct:   10 LAVLIDADNTPPSIIDALLAEIAKYGIASVRRIYGDWTTPNLRGWKDVLLEQAIQPIQQFRYTVGKNATDSALIIDAMDLLYTEK--LDGFCIVSSDSDFT 108          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: B4S4I9_PROA2 (HTH OST-type domain-containing protein n=2 Tax=Prosthecochloris TaxID=1101 RepID=B4S4I9_PROA2)

HSP 1 Score: 107 bits (268), Expect = 9.890e-27
Identity = 53/101 (52.48%), Postives = 71/101 (70.30%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N    ++D LL E+AKYG   ++RI+GDW S LLKGW+  + EH + P+ Q+ + K K  +D+A+IID MDLL+T     DGF I SSDSDFT
Sbjct:    9 LAVLIDADNTQASIIDGLLSEIAKYGVASVRRIYGDWTSPLLKGWKEILLEHSIQPIQQFGYTKGKNATDSAMIIDAMDLLYTGK--FDGFCIVSSDSDFT 107          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A3P3XNL0_9SPIR (HTH OST-type domain-containing protein n=4 Tax=Spirochaetales TaxID=136 RepID=A0A3P3XNL0_9SPIR)

HSP 1 Score: 107 bits (268), Expect = 1.150e-26
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+L+DA+N  P ++D LL E+AKYG   ++RI+GDW +  L+GW+ ++ E+ + PV Q+ +   K  +D+A+IID MDLL+TE  +LDGF I SSDSDFT
Sbjct:    9 LAVLVDADNTQPAIIDGLLAEIAKYGIASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFAYTTGKNSTDSAMIIDAMDLLYTE--NLDGFCIVSSDSDFT 107          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: UPI001E5B95BE (NYN domain-containing protein n=2 Tax=Arenicella chitinivorans TaxID=1329800 RepID=UPI001E5B95BE)

HSP 1 Score: 108 bits (269), Expect = 1.410e-26
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N  P ++D LL E+A YG   ++RI+GDW S  LKGW+  + EH + P+ Q+ + K K  +D+A+IID MDLL+++A  L+GF I SSDSDFT
Sbjct:   40 LAVLIDADNAQPSIVDALLSEIANYGIASVKRIYGDWTSPGLKGWKEVLLEHSIQPMQQFAYTKGKNATDSAMIIDAMDLLYSDA--LEGFCIVSSDSDFT 138          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A7C4X682_9SPIR (NYN domain-containing protein n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A7C4X682_9SPIR)

HSP 1 Score: 107 bits (267), Expect = 1.550e-26
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N PP +++ LL EVAKYG   ++RI+GDW +  LK W+  + ++ + P+ Q+++   K  +D+ALIID MDLL+TE   LDGF I SSDSDFT
Sbjct:   15 LAMLIDADNTPPAIIEGLLAEVAKYGIASVKRIYGDWTAPNLKQWKESLLQYAIQPIQQFSYTSGKNATDSALIIDAMDLLYTEK--LDGFCIVSSDSDFT 113          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A3C1C7C7_9SPIO (Maebl n=4 Tax=Spirochaetes TaxID=203691 RepID=A0A3C1C7C7_9SPIO)

HSP 1 Score: 107 bits (267), Expect = 1.620e-26
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N  P ++D LL E+AKYG   ++RI+GDW +  L+GW+ ++ E+ + PV Q+ +   K  +D+A+IID MDLL+TE  +LDGF + SSDSDFT
Sbjct:    9 LAVLIDADNTQPTIIDGLLAEIAKYGVASVKRIYGDWTNPNLRGWKERLLEYAIQPVQQFAYTTGKNSTDSAMIIDAMDLLYTE--NLDGFCLVSSDSDFT 107          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: F8F4J7_TRECH (HTH OST-type domain-containing protein n=4 Tax=Bacteria TaxID=2 RepID=F8F4J7_TRECH)

HSP 1 Score: 107 bits (267), Expect = 1.650e-26
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N  P ++D LL EVAKYG   ++RI+GDW S  L+ W+ ++ E+ + P+ Q+++   K  +D+A+IID MDLL+TE   LDGF I SSDSDFT
Sbjct:   18 LAVLIDADNTQPAIIDGLLNEVAKYGVASVKRIYGDWTSTNLRSWKDRLLEYAIQPIQQFSYTSGKNATDSAMIIDAMDLLYTEK--LDGFCIVSSDSDFT 116          
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Match: A0A1K1QKI2_9GAMM (OST-HTH/LOTUS domain-containing protein n=4 Tax=Rhodanobacteraceae TaxID=1775411 RepID=A0A1K1QKI2_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 1.730e-26
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVTEHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDFT 303
            LA+LIDA+N  P ++D LL EVAKYG   ++RI+GDW    L GW+T + +H + P+ Q+ +   K  +D+A+IID MDLL++E    DGF I SSDSDFT
Sbjct:    8 LAVLIDADNARPAIVDGLLAEVAKYGTAHVKRIYGDWTGPNLNGWKTALLDHSIQPIQQFAYTSGKNATDSAMIIDAMDLLYSER--FDGFCIVSSDSDFT 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig988.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0F3KI88_9GAMM2.100e-2751.49Maebl n=1 Tax=Luteibacter yeojuensis TaxID=345309 ... [more]
A0A534SA78_9DELT2.450e-2753.47NYN domain-containing protein n=1 Tax=Deltaproteob... [more]
A0A535BKG9_9DELT7.020e-2752.48NYN domain-containing protein n=8 Tax=unclassified... [more]
B4S4I9_PROA29.890e-2752.48HTH OST-type domain-containing protein n=2 Tax=Pro... [more]
A0A3P3XNL0_9SPIR1.150e-2650.50HTH OST-type domain-containing protein n=4 Tax=Spi... [more]
UPI001E5B95BE1.410e-2651.49NYN domain-containing protein n=2 Tax=Arenicella c... [more]
A0A7C4X682_9SPIR1.550e-2651.49NYN domain-containing protein n=1 Tax=Spirochaetes... [more]
A0A3C1C7C7_9SPIO1.620e-2650.50Maebl n=4 Tax=Spirochaetes TaxID=203691 RepID=A0A3... [more]
F8F4J7_TRECH1.650e-2651.49HTH OST-type domain-containing protein n=4 Tax=Bac... [more]
A0A1K1QKI2_9GAMM1.730e-2650.50OST-HTH/LOTUS domain-containing protein n=4 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig988contigH-akashiwo_Contig988:150299..150601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog290512.Paes_1873
PFAMsNYN,OST-HTH
Model size303
Max annot lvl1090|Chlorobi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.62e-27
EggNOG OGsCOG1432@1|root,COG1432@2|Bacteria,1FECY@1090|Chlorobi
DescriptionOST-HTH/LOTUS domain
Cds size303
COG categoryNU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388068.1916308-CDS-H-akashiwo_Contig988:150298..1506011681388068.1916308-CDS-H-akashiwo_Contig988:150298..150601Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig988 150299..150601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig988.2.1prot_H-akashiwo_Contig988.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig988 150299..150601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig988.2.1

>prot_H-akashiwo_Contig988.2.1 ID=prot_H-akashiwo_Contig988.2.1|Name=mRNA_H-akashiwo_Contig988.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=101bp
LALLIDAENIPPCVMDKLLPEVAKYGEVKMQRIFGDWESDLLKGWRTKVT
EHDLVPVHQYTFVKKKGFSDAALIIDCMDLLHTEAEDLDGFVIASSDSDF
T
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mRNA from alignment at H-akashiwo_Contig988:150299..150601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig988.2.1 ID=mRNA_H-akashiwo_Contig988.2.1|Name=mRNA_H-akashiwo_Contig988.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig988:150299..150601- (Heterosigma akashiwo CCMP452)
CTCGCACTGTTGATTGATGCAGAAAACATACCCCCATGTGTCATGGACAA GTTGCTGCCTGAGGTAGCAAAGTATGGTGAAGTCAAAATGCAACGCATTT TTGGAGACTGGGAATCTGATTTATTGAAAGGGTGGAGAACAAAAGTCACG GAACATGATCTGGTTCCAGTGCACCAGTATACTTTTGTAAAAAAAAAAGG TTTCTCTGATGCAGCACTCATCATCGACTGCATGGATCTGCTACACACGG AGGCAGAGGATCTTGATGGGTTTGTGATTGCCAGCAGTGACTCAGACTTC ACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig988:150299..150601-

>mRNA_H-akashiwo_Contig988.2.1 ID=mRNA_H-akashiwo_Contig988.2.1|Name=mRNA_H-akashiwo_Contig988.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=303bp|location=Sequence derived from alignment at H-akashiwo_Contig988:150299..150601- (Heterosigma akashiwo CCMP452)
CTCGCACTGTTGATTGATGCAGAAAACATACCCCCATGTGTCATGGACAA
GTTGCTGCCTGAGGTAGCAAAGTATGGTGAAGTCAAAATGCAACGCATTT
TTGGAGACTGGGAATCTGATTTATTGAAAGGGTGGAGAACAAAAGTCACG
GAACATGATCTGGTTCCAGTGCACCAGTATACTTTTGTAAAAAAAAAAGG
TTTCTCTGATGCAGCACTCATCATCGACTGCATGGATCTGCTACACACGG
AGGCAGAGGATCTTGATGGGTTTGTGATTGCCAGCAGTGACTCAGACTTC
ACA
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