mRNA_H-akashiwo_Contig987.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig987.3.1
Unique NamemRNA_H-akashiwo_Contig987.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig987.3.1 vs. uniprot
Match: A0A7S3YCC0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCC0_HETAK)

HSP 1 Score: 176 bits (447), Expect = 7.930e-51
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 CPSTSGLSGTVAAAPLLPFQLGGAVQFLQPANAVQLIQHHSNPNTSQAASLSMAAGMANPFAFGRPPAPSELPQQAGAALAMGGVWPGAIG 273
            CPSTSGLSGTVAAAPLLPFQLGGAVQFLQPANAVQLIQHHSNPNTSQAASLSMAAGMANPFAFGRPPAPSELPQQAGAALAMGGVWPGAIG
Sbjct:  392 CPSTSGLSGTVAAAPLLPFQLGGAVQFLQPANAVQLIQHHSNPNTSQAASLSMAAGMANPFAFGRPPAPSELPQQAGAALAMGGVWPGAIG 482
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig987.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3YCC0_HETAK7.930e-51100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig987contigH-akashiwo_Contig987:142140..149983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size310
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388068.0651135-CDS-H-akashiwo_Contig987:142139..1422381681388068.0651135-CDS-H-akashiwo_Contig987:142139..142238Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig987 142140..142238 +
1681388068.0762255-CDS-H-akashiwo_Contig987:149773..1499831681388068.0762255-CDS-H-akashiwo_Contig987:149773..149983Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig987 149774..149983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig987.3.1prot_H-akashiwo_Contig987.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig987 142140..149983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig987.3.1

>prot_H-akashiwo_Contig987.3.1 ID=prot_H-akashiwo_Contig987.3.1|Name=mRNA_H-akashiwo_Contig987.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=103bp
CPSTSGLSGTVAAAPLLPFQLGGAVQFLQPANAVQLIQHHSNPNTSQAAS
LSMAAGMANPFAFGRPPAPSELPQQAGAALAMGGVWPGAIGAAGAATAGQ
PQQ
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mRNA from alignment at H-akashiwo_Contig987:142140..149983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig987.3.1 ID=mRNA_H-akashiwo_Contig987.3.1|Name=mRNA_H-akashiwo_Contig987.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7844bp|location=Sequence derived from alignment at H-akashiwo_Contig987:142140..149983+ (Heterosigma akashiwo CCMP452)
TGCCCAAGTACATCGGGGCTTTCTGGCACTGTTGCTGCAGCACCTTTATT
GCCTTTCCAACTCGGTGGGGCAGTGCAGTTTCTTCAGCCTGCAAATGCGG
TGGGTGGTGTATCTCATGATAGTCTATAACCATGCGCTTTGTATTGTGTA
AGAAACTGGATAAGAAGTGCATGTATAGTATTATATATAGTATACAGAAG
GAATCCAAGTTGTGATCTGGGGAGCAGGGGAGAGCTGGTTACAGTTTGGG
ATGTGGCTGGGAGAGAAAAGTATTTTTCTTAAGTTTTGGTGGTGAACGGG
AGACAAGAGGTGGAATCTAGAAGTGGAAGGGTCCGCTTGTGGAGGCCGGA
GCTTCGGTCCCCTTTTAGTTTTATCTGAGCGGCGGCTTTACCTTACATTA
ATTAAAATCATCTTCATCATCATAAACATGTATATGTTGACAACACCTGT
CCTGGTTTTGAAAACAGAATAAATTTGTAAACACCTGATCGACATAAATG
GTGAATTATACCCTTTTTCGGCAAGATCTGGAAAAAGGAGTGCAAGAGCC
ATGAATTCGATCAATTCAATAATAACACTATTTGATGAAATTCGAAAAGG
ACTGGATTTCAATGTCTCCGTTTAAAATTAAAAATATTTGAACACATAAT
CACGAGAATAATTTAATTTTATCATTTACATGTGTTTTTCATGCTTTCCA
GACTCCGATTTTGTTTGACGACTTCCCATCGCCGCCGCCACAGTCAATCA
TTGACTTCTTCGTTGAAAGTTGAAAGTATCATATCACACAGGAGCAAAAT
GATCGAGGAAGAATTGGCTGCTGCTGCTGCTGCTGCTGGTGGGAAGAAGG
GAGGAGGCACCAATTCCTTCTTATCTGAAGCTGCTCGAAATGCAGAATAC
ACTCTGGACAGAACTGTTGTATCTTCCAAATCATATAATATTTCTCCGTA
TGAAGCTTTCTTTTGCTTTCCAGCTTCCGTCAAGCACACCGTTGCCCCAC
CCACAAAGTCGTGTCTGTAGATGCCGTTGATCGCCAGCTGTTCGCGCGCC
AAGCCCGTTCGTTTAAACATTCCATGCTGAGGACGAATTCATCTGCAAAA
CCTGGCGCAACAACAGGGTTCTTATTCATCCGGGGTATTATTATATCAAC
AGGAATATGCTCTATAATGGCCTCAGTCCTTGCCAGGCATTTGTTGGAGA
GATAGACTGGGTCATTTGTCTTTCGTCTACAACCCCTGATAACAGTCATT
GTATACTTATTTTTCGACTCACTTTTGTCATTGTCTTATTTTTCAACTCA
CTTTTCAAATAATTACAACAAACAGATCCTCTTCTTCTATATTGTATGCT
CACTAAATCTTTATGGCTCACACTTTTTCCAGTGTCTCTGACATATATTT
AATTTGTTCTTCTGGTGAGGTGGGGGTGGAAAAATGAGCCCAAAAATAAA
ATAAACTGTGAACGGGCTAGCAGTGGTCAATATACCAGCAGCAGTATCAC
TCTAATTAATAAAAGGTACTACTATACTTATATAGTAGTACTAACATACT
GAGCTGCAAGTTCGATCGCACTACAATACTTCTCTTTTTCTTTAACAACA
TCATCATTGAGGGGGGGAAAAGAAAACTATAATAATAATATACAGTAGAA
GAAGAGTAGTGGAGATTGTACTACTTTTTTATTATTGATTATCATTATTA
TCATTATCAATGACAGATTGATAAGGATACTTCTTTTTATAATCCAAAAG
AACTTCATAAGAACTAAATATTTCGATCGAGAGTCGGATCTTCTTCAGTA
TTCCCAGCCGCTCTGGATAATTCAGCTGGAAAGTACATACCAATGTTGGT
AAAAAAGGTTACCCGTGTTTGCAAAACTCCCCTCGTTTGCATAACCAGGA
CAGGTGTTTGCAAACACCGGGTTTTTCCTAAACACGGGTCAACATATATG
AAGTGCAAGGTGGCAAATATCGGGTTTTCACGGGACAAGATCCATGCTAT
TGGATTTGCAAGGGCGCGCCAGAGTTGGAGGGGACCGGATGTGGTTTTCC
CGGACATTGTGTTTAATTGTCCGGGCATGCCAGAATGGCACGGCTTCTGC
CTGCGCATGGACAAAAACCTGAAACTGCTGGGGAATGCCTTGGATAAGAA
GTTGACATGGTAAGCACACGTGAAGGCATGCACGCAGAAGGCGAGGAAAT
TGCTGGCTTGGCTGTGGGTGTGCGCCAAAACGAGGTGGGGGCTAGGGCGC
ACGGTCGTTCAGAGGCTCTACAAGGGGGGGTGGAACCGGTGCTGTTGAAT
GAGGTGGCTGTCTGGGGGGCGGCGCTGAAGAGCAAAGGGGTGGTGAAGCA
GCTCAGATCGGTACAGACGATGGCGGCGAAGGCGATGACCAGGTGCTTCA
AGTCGACTAGAGGACGGCGGTGGCACTGGCGCTGGCTGGCCTTCCCCCAG
TGCATCTGGCGGGAAAGGAGATGGTGGTGCTGCAGTACACTCATGGGACA
ATGAGGCATAGAATTGAGGCGCTGAGGGAGGGATGCCAGTGAAGTCCGCA
TCTCAGCTTTGTCAGGAAGACTCTGGAGGAAGCGGGAGTGGACTTGCAGT
GGACATTTGAGAGGAGAATGCTGGACCATGAGCTACCGTACCCGCCGCTC
AGGAAGGCAGTGTAGGTCACCCTGGGCTCGCGGGAAGCATGGGCAGAGGG
GCTGCTGAAGGGGACGACGGGTGGCAGGATCTTCACTGTTGGGTCAAAGT
TGGAGAACGGCTCGGCGGGGGTGGCTTTCGTGGCATTCAACAGGAGAGGG
AGGGAGGTCAGGAGGGGGCTGTATCAGCTATACCACACTACTGCATGGTG
TACCAAGCGGAGGGGCTGGCACAAAGGGAGTCAGTGCGCTGGACCAAGGG
GCCGGGAAGGGGCAGTGAGTGGATGGTGGCATCAGACTGGTTGGCTGTTT
TGGCTCGCTTGAAGAGCAGACGGGGAATGACACGCCTGGTGAGTGAGATA
GCGCAGGAGGCGGAGGGGCGGCACTCATTTGTGTACATCCTCACCAGGGG
CATGAGGGGAATGAGGTGGCGGACCGGCTGGCGAAAGAAACGGAGAATGC
GGGGATAGGGATGGAGTTGGATGTGCCGAGAGCATTTACAATGAGGCTGG
CAAAGGAGCAGACGTGGAGGGTCTGAGCACAGGAGTGGAGAGATCTAGAG
CATGGGTCGGGGATGGACATGGGAGAGGATAAGGCGTATCTGTGATTTGC
TCCTGCGTGAGAGGACATTAAAGAGGCTGTCTGGAGGGGGGGGAGGCTGC
GGACCATCGGGTGCTTCAGCTGCTGTCTGGACATTGCAACCTGGCGGGTA
TCTGCACAGCCGGGGGAAGCGAGATGGGGCGCAGTGTGACAACTGTGGGA
GGGGGCAGAAAGAGGACGTGGAGCATTATCTGCTTCACTGCCCACGATGG
GGGGTGCAGCGGCAAGAGATGAGTGACCTCATTGTTCAGAATGACGCGCA
AGCGAGTATGGCAAACATGTTGAAGGAGGTGGGAAGGCTTGCTCGATTTG
TGTGAAGCACGGGCAGGCTGAACTTCTAGATAGGCTGGGCAGCCTAAGCA
ACAGGGGATGCTGTGCTATGGCTCACGGGTTGTTTTTTCTTAAAAGTTTT
GGTGATGAGTAGGAGTGCGTGAGCTGGGACCTAGAAGTGGAAGGGTCCGT
GTATAGAGGCCGGGACTTCGGTCCTTGTATAGTTATCCAAAAGGCTGGAC
CTTATATAAATTAAAATCATCATCATGTATATACATAACATATATGTCGT
TGAGATGGTGATAGTTTGTCTATCAATCTCGTCACACTATTGGAAGATGG
AAGTACTGGTAATGGTGCGTGGTGTAAAAAGGAGCAGCACAAAACAGGGC
AGGGTGGTGTATATACACAAAAAATGGATGATGTCGATCAACAAGCGAAC
TCTCCTCATGTCTGTCTTCGTCTAGCAACAAGAATAAAAACTTTAAAGAG
TAGAAGCCTGTTCCAACTTGATGTTGAACACAAGAACCAGCCCTTTGTCT
TTGTCAGTATAGCTTGTAGTTAAATGTTGGACCAGCAGTGCATCATCGTC
ATCAAAAATTAACAGGTATATATTTTCTTTGAACTTGCAGTTGAGCTAAT
AAGATCATACTACCAGTATATATCGGGATGATTCTCGAGATATATTGAAG
TTGAACTTTCACTTTCGCTGTAGTCAGATAGCTATTTCCTTAGTGACCAC
CAAGATCCAAAAACAGAACTGTCGGAGGTAGTAACAGTCTTAAATCTAGA
ATCAAGAATCAAGATTCAAGAGGCCAAAACAAAAAGAGCTTTTTCATCAT
GATGATATCAATGAGTCATTCAGTCTTCTTCATGGCATGGAGGTCTGATA
CAAAACACGTTGATCTTCTTTTAAGAAATACTTATGGAATGACCAAAAAC
GAATCCCCATGCATTTGCCGTCGTTTGCCCATACAAACGATAAGGTACTA
GGTACCGGTTGCGAGCTAGGTAAGTAGTAAACAAGCAGTGGTGACCGACG
GTTGGAACTCCAATCTACGAGTTGCTATCTTCACTCTGAGCTTTCATCAT
AAGCATTGAAAGAATTACAAGTCAATCTCATCGATCACGTCAATTTCAAC
AACACTCCCCCAGATTCGAAAAATTATTGATATCCTTGTAGATGATTTGA
GAATCTCACAAAGTTGAAATTAAAAATCTCTTAGTAGTCCCTATCTTCAA
AATACAAGCCTTGATCTTCACGAAGATCTCCAGATCTTGCCTCAGTAGAA
GTCTTCTCCTCATCCTCAGGAGGGTTTGGAGTAGATGCAGCATTCATAGC
ATGAGTAGGATGCATCATCATAGTTGAGGCAGGGGGCTGTTGATTCATGT
TGATGTCAGCTTGAATTGTTGCCAGTTTGTTCTTGCAATTATTCAGCATA
CACAAAACCGTTTAATGTGACCCAGTTGGTGACAGAAATGACAAATTCCA
TTAAATCTGTTGAAGTCTCCTTCAACTCTGTTATTATTGTTTCCATTGCT
TCTGTTTGCATAGCTATTGCCATAGTTGCTGTTGTTGCCAACGAAGTTGT
CAGAGTTATTACCTTGGTTATTTTTGAAGTCGTTACCTTTGTAATTATTC
CTAGGTTGTTGCTGTCTGGGTTGTCTTCCATTGTTGTTTCCTTCTCTTGG
ATACTGTCTTTGAGGTCTTAAATGTTGTTGTTGTTATTGACTTCAACATT
CAAAGTTCCTTGTTAGCTTTCTTGAGCTGTTCTTCTCTCATATTTAGTTT
TTGAATAACATACTTATAAGCAGGGGTTACTCTCATATAGTACCATCAGG
GTTAGTGAGTCTTAGGTCAAGTTCTATTTTCAAGCTAGAGCACACCATAT
GATAGGGGTCATCAGTGTCTTGACCAGGAACACCCTCAAGTAGTATATGA
ACTACAGCAGAGTCAGACAAAGGTTGACCTTCAAGTCTAATTAGTCGGTT
AACTGATTGAATGACAAGGGTGGTGAAGTATCTGATTGGTGGATAGTCAA
CATACTTCAGGCTATAAAGCTTTCTTCTTTGATGAAATAAAGAGACAGTG
CCATTATTTTCAAGCCAGGTTTCAACCTTTTCCCAAATGTCAGGAGCAGG
ATCAGATGGATCGAAAATAGTTGAGCAGGTTCCAGGTCCCAGTAGTAAAT
GAACAGTTCCAATCAGTTTCTTATTTTTGTCGATGTAACGTTGAACTTAT
TCTCTGGATGCTTGTCGAGCGCCAGTGTTGAGAGAAACAGGATAGTCACG
TCTCGTAATGCTAAAGAGTTATTCTTTGCGAAGAATGGCTTCAAGATTTA
TCTTCGTCACAAGCGAATCTTCAGGAAATGCAGTGTCAAGTCAGTCATGG
ATATTTTTACGAAGTTGGTCAAAATCTTTGGAGCTTACAGTCGGAGCTTG
AGGTGATGCCGACGCTATCGCAAAACTTTGGTTCACCATTGCAGTAGCAA
AAGGTCCAAGTGGTTGTTGCCAGGACTGCAGATTTCGAGCAGCGTTGTTG
TTTGCAGAGTTACATCTGCATGTCATGGACGGATATCCTTGTCAAAGAGC
AAATAATCACAGATTGATTCCAGACACGTAATCAATGTTGTCGTTGTCAC
AGATCTTTATCACAGAGTTTTCACCATCCCAGCCAGAGTCCGTTAAGCTT
CTTAGCACATGGTGGGCCCATAACCTGTCGTTGAGATGGCGATAGTCAGT
CTATCAATGTCGCCACTCTATGTAGCTAGAAGAGAGGCAGATCAAGACAG
CTTAACCAAAACTCTGGGTCGTGATTGTACATGTTCTTTATTTTTCAATA
TTGGAAGATGGAATTGTGCATGGTGTAAAAAAGAGCAGCACAAAAAAGGG
CAGGATGGTGTACACAGAAAAATAATGATGTTGATGAACAAATAAACTCT
CCTCATGTCTTCGCCTAGCAACAAGAATAAAAACAGTAAAGAGTAGAAAC
CTATGTTCCAACTAAATGTTGAACACAAGAACCAGCAATCGTCTTTGTCA
GTATGCTTGTAGTTGAACGTTGGACCAGCAGTGCATCATCGTCATCAAAG
ATCAACATGCACATATATATTCTTTGAACTTGCAGTTGAGCTAAAAGATC
ATACTACCAGTACATACCGGGATGATTCTCGAGACATATTGAAGTTGAGC
TTTCACTTTCACTGTAGTCAGATAGCTATTTCCTTAGTGACCAAGATCTA
AAAACAGAACTGTCGGAGGTAGTAACAGTCTTAAATCTATAATCAAGAAT
TGAGTTGCAAGCCTTCAAGTTGGTGCCGTCAATTTTGAACATTCTTTGTT
TTTTTAGTCTTACGCGAAGCAAAATGCAAATATCAAAGAAATTCCTTGGT
ATAAAATGTTTGTTTCAAACACTCTTTGGTATAAAGTGTTTGTTTTGAAG
AACTCTATTGATTGAAATGCTTTTGGAGAAATGGAATTATGTGCGTGCAA
AGTTAGAGGAAGGAGAAGACTCTCTAATTCCTTGGGCCAGATCTTCATGA
CAAACATTTCATATACTAAGGAAGTTCCTTTATCTTTGCATTCTGGTTTG
AGCTAGAGTGAAACAAAGGTTTTCCGCGTTTCCAAAAAGGACTCCATTTA
AGGAACAGAGTAGTATGTCAATAGGGAAGGGGTTAGGGCACATCAAACCA
AGTGGAGCTTATAAGAGCTCAAAAATACCAAAAATTCATTAAGGTATATG
GGGTTTTGAAATTTTGGTCTGTGCCAAAAAAAAAAGCAGTTGATTTTAGG
GAAAGTGTTAAAGTGATTTTTTTAAAACTCGTGATGATTGGGATAGACCA
TATTGGCACAAAATTTGCCCCGTTTTTTTGGTTGAAAGTGCTTGTTGTGG
GCCAGAGGAGAGCGCTCTACCCGGTTAGGCAAGTCAGAAAAGCGCGATGC
GAGGGATTCTTACAACATGCTTGTCTCAAATGACTCCGTTCCTTTTGTAA
AAAAATGGTGTTCCCCAACCATATATTGTATATTAACAATAACGTTACAA
GTATCATAATTATTTTATTAAATATGATATGTTGACTTTACATTTTTGGA
GTCCAATATTCTTCCTATCTTTTTATGCCACCAGGTTCAGCTTATTCAAC
ATCACAGCAACCCAAACACTTCCCAAGCAGCCTCTCTAAGCATGGCAGCC
GGAATGGCGAACCCCTTTGCCTTTGGAAGGCCGCCCGCTCCCTCTGAACT
GCCACAGCAGGCCGGGGCAGCACTAGCCATGGGTGGGGTCTGGCCAGGGG
CCATAGGTGCAGCCGGCGCTGCAACGGCCGGGCAACCGCAGCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig987:142140..149983+

>mRNA_H-akashiwo_Contig987.3.1 ID=mRNA_H-akashiwo_Contig987.3.1|Name=mRNA_H-akashiwo_Contig987.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=309bp|location=Sequence derived from alignment at H-akashiwo_Contig987:142140..149983+ (Heterosigma akashiwo CCMP452)
TGCCCAAGTACATCGGGGCTTTCTGGCACTGTTGCTGCAGCACCTTTATT
GCCTTTCCAACTCGGTGGGGCAGTGCAGTTTCTTCAGCCTGCAAATGCGG
TTCAGCTTATTCAACATCACAGCAACCCAAACACTTCCCAAGCAGCCTCT
CTAAGCATGGCAGCCGGAATGGCGAACCCCTTTGCCTTTGGAAGGCCGCC
CGCTCCCTCTGAACTGCCACAGCAGGCCGGGGCAGCACTAGCCATGGGTG
GGGTCTGGCCAGGGGCCATAGGTGCAGCCGGCGCTGCAACGGCCGGGCAA
CCGCAGCAG
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