mRNA_H-akashiwo_Contig986.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig986.1.1
Unique NamemRNA_H-akashiwo_Contig986.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig986.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig986contigH-akashiwo_Contig986:255681..256563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categoryother localisation
Exons4
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.9274642-CDS-H-akashiwo_Contig986:255680..2557381681388067.9274642-CDS-H-akashiwo_Contig986:255680..255738Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig986 255681..255738 -
1681388067.938511-CDS-H-akashiwo_Contig986:255999..2561171681388067.938511-CDS-H-akashiwo_Contig986:255999..256117Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig986 256000..256117 -
1681388067.9476125-CDS-H-akashiwo_Contig986:256329..2563471681388067.9476125-CDS-H-akashiwo_Contig986:256329..256347Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig986 256330..256347 -
1681388067.9565294-CDS-H-akashiwo_Contig986:256484..2565601681388067.9565294-CDS-H-akashiwo_Contig986:256484..256560Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig986 256485..256560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.9653955-UTR-H-akashiwo_Contig986:256560..2565631681388067.9653955-UTR-H-akashiwo_Contig986:256560..256563Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig986 256561..256563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig986.1.1prot_H-akashiwo_Contig986.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig986 255681..256560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig986.1.1

>prot_H-akashiwo_Contig986.1.1 ID=prot_H-akashiwo_Contig986.1.1|Name=mRNA_H-akashiwo_Contig986.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=90bp
MRSARSLDLQLPPCYQETEAPADLNDLHDESTLGVLRCRSCHRAAAAERA
VTRRRRWPTAEALTEVQLSRHRASFLAAGGSSRGRGGGGG
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mRNA from alignment at H-akashiwo_Contig986:255681..256563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig986.1.1 ID=mRNA_H-akashiwo_Contig986.1.1|Name=mRNA_H-akashiwo_Contig986.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=883bp|location=Sequence derived from alignment at H-akashiwo_Contig986:255681..256563- (Heterosigma akashiwo CCMP452)
AGAATGAGGAGCGCAAGAAGTTTGGATCTACAGTTGCCGCCATGTTACCA
AGAAACTGAAGCACCCGCGGATTTGAATGGTAAGCTGAACGATTCCTCCC
TCTTATTTCAGAGCAACCTATTTCTATAATTTTCCTTACTTGTCAACTGT
TTTTTTTTTTTTTTTTTATGTCGTTGTTCCTCTCACCGCCGCTTGGGCCT
GCTGTGGTGGATGCAGATCTGCATGACGAATCAAGTAAGTTGGTGGGCCT
TACCATAGAATGCCGTCAAATAATGCACTTCTTGTCTTGATGCAGTGTTT
TGTTGAACGGAAAGCTCAAACAAGAGTTGCACAAAAGGAAAGCCTCTCTC
TCCTCTCAAGAGGGCACACTGGGTGCTGCTAGGCCTGGCTCCTGAACCCC
CCCTCCTCTGCCACACCAATCCTCCCACCCTCGTTCCCTTCACTAGCTCT
GGGCGTGCTCCGGTGCCGGTCATGTCACCGTGCCGCTGCGGCCGAGCGGG
CAGTCACGCGCCGCCGCCGCTGGCCCACCGCCGAGGCACTCACCGAGGTT
CAGCTTAGCAGGCAGTGAGAGCTCCCCCCCCTCCCCCAAGCCACCCATCC
CTCTCTCTCTCCTCCCCAAAACAAAGCCATTCTGCCTTGGTGAACTGTTG
GGGCCGCCTCGGACGCTTACTCTGTGTGTGACACAAGGTACCATGCCCAG
ACAGCTGCAGTAGTGTCAAACTACTATGCTAATAAGGCATAATACTAGTA
GCAAAATAAAAAATAATGATGATGATGATGAATAATATATATATATTACG
TAATTCGCATGGGGATTGGGACCAGCCGGGCCAGCTTCCTTGCAGCCGGC
GGCAGCAGCCGCGGCCGCGGCGGGGGGGGAGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig986:255681..256563-

>mRNA_H-akashiwo_Contig986.1.1 ID=mRNA_H-akashiwo_Contig986.1.1|Name=mRNA_H-akashiwo_Contig986.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=270bp|location=Sequence derived from alignment at H-akashiwo_Contig986:255681..256563- (Heterosigma akashiwo CCMP452)
ATGAGGAGCGCAAGAAGTTTGGATCTACAGTTGCCGCCATGTTACCAAGA
AACTGAAGCACCCGCGGATTTGAATGATCTGCATGACGAATCAACTCTGG
GCGTGCTCCGGTGCCGGTCATGTCACCGTGCCGCTGCGGCCGAGCGGGCA
GTCACGCGCCGCCGCCGCTGGCCCACCGCCGAGGCACTCACCGAGGTTCA
GCTTAGCAGGCACCGGGCCAGCTTCCTTGCAGCCGGCGGCAGCAGCCGCG
GCCGCGGCGGGGGGGGAGGG
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