mRNA_H-akashiwo_Contig985.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig985.1.1
Unique NamemRNA_H-akashiwo_Contig985.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A7S2V690_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V690_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.490e-56
Identity = 97/121 (80.17%), Postives = 107/121 (88.43%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MP+LV+NMGGEMVYILQQRL AQ VP EK +KVLQDVVRTMYS  F+ ELFKPQ +Y+N  TKQIFDKLAHSSIMKLN+SSMEKLYDLMTMG KYQ+LLC+QPEQLLQVTL HLE LK +V
Sbjct:    6 MPMLVMNMGGEMVYILQQRLQAQQVPPEKKTKVLQDVVRTMYSTSFISELFKPQPMYTNTATKQIFDKLAHSSIMKLNESSMEKLYDLMTMGVKYQVLLCNQPEQLLQVTLNHLEALKVVV 126          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A482SHP3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHP3_9ARCH)

HSP 1 Score: 177 bits (449), Expect = 7.130e-52
Identity = 85/121 (70.25%), Postives = 108/121 (89.26%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MP+LV+NMGGEM+YIL QRL AQN+P+EKA KVL+DV++TMY+P FL+ELFKPQ +Y+N +TKQIFDKLAHSSIM+LN++SMEKLYDLM+MG KYQ+L C+ P+Q L VT+ HL++L QLV
Sbjct:    8 MPILVLNMGGEMIYILHQRLQAQNIPEEKARKVLEDVLKTMYTPVFLEELFKPQDVYTNASTKQIFDKLAHSSIMRLNKTSMEKLYDLMSMGVKYQLLSCTCPQQYLHVTINHLDSLMQLV 128          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A7S1GFF1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFF1_9STRA)

HSP 1 Score: 175 bits (444), Expect = 8.580e-52
Identity = 88/121 (72.73%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MPLLVINMGGEMVYIL QRL AQ++P EK  KVL DVVRTMYS  F+ ELFKPQ +YSN++T+QIFD+LAHSSIM+LNQ+SM+KLYDLMTMGFKYQI+  +QP  +LQVTL HLE +K +V
Sbjct:   10 MPLLVINMGGEMVYILDQRLRAQSIPTEKCRKVLTDVVRTMYSAKFIAELFKPQTMYSNRSTRQIFDRLAHSSIMRLNQNSMDKLYDLMTMGFKYQIIAATQPSHVLQVTLNHLEAMKAIV 130          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A7S0VBR7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VBR7_9CRYP)

HSP 1 Score: 167 bits (422), Expect = 1.080e-49
Identity = 79/121 (65.29%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MP++VIN+GGEM+YILQQRL AQN+P EKA KV+ D+VRTMY+P F+ ELFKPQ++YS+ +T+QIFD++AHSSIM+L++SSM+KLYDLMT GFKYQI+ C+ PE LL VT  HL+ ++ +V
Sbjct:   11 MPMMVINLGGEMMYILQQRLVAQNIPREKAKKVIADIVRTMYNPNFIAELFKPQELYSSASTRQIFDRIAHSSIMRLSESSMDKLYDLMTTGFKYQIISCTCPEDLLTVTTNHLQCIRTMV 131          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A7S2VKF9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VKF9_9DINO)

HSP 1 Score: 167 bits (424), Expect = 1.100e-49
Identity = 78/118 (66.10%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLK 354
            MPLL++NMGGEMVYIL+QRL AQ +P+ K  KVL DVVRTMY P F++ELFKPQ++YS Q+T+QIFD+LAHSSIM+LN+SSM+KL+DLM MGFKYQ++ C+ P++L+ +T  HL+ LK
Sbjct:    4 MPLLIVNMGGEMVYILEQRLQAQKIPELKQQKVLSDVVRTMYYPRFIEELFKPQEMYSLQSTRQIFDRLAHSSIMRLNESSMDKLFDLMAMGFKYQVISCTSPQELVDITCNHLDVLK 121          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A6H5K0W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0W9_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.360e-49
Identity = 80/121 (66.12%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            +P++V+NMGGEMV IL QRLNAQNV ++K + VL+DV+ TMY+  F++ELFKPQ +YS + TK++F KLAHSSIM+LN+SSM KL+DL+TMG KYQ+L C+QP+QLLQVTL HLET+KQ+V
Sbjct:    9 LPMVVLNMGGEMVNILHQRLNAQNVVEDKRTAVLRDVISTMYARQFVEELFKPQDMYSEKATKEVFYKLAHSSIMRLNESSMSKLFDLVTMGVKYQVLSCAQPQQLLQVTLNHLETIKQMV 129          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A7S2QVI2_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVI2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.130e-48
Identity = 79/117 (67.52%), Postives = 100/117 (85.47%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETL 351
            MPLLVINMG EM+YILQQRL AQNV  EKASKVLQDV+RTM +  F+DELF+PQ++Y+N +T+QIF+KLAHSSIM++N++SM+KLYDLMTMG KYQ + C+ P+Q++Q T  HL  L
Sbjct:   10 MPLLVINMGAEMIYILQQRLQAQNVRQEKASKVLQDVIRTMLASSFVDELFRPQEMYTNSSTRQIFNKLAHSSIMRINETSMDKLYDLMTMGVKYQWICCNVPQQMVQNTYNHLTAL 126          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A7S3HSD8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSD8_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.260e-48
Identity = 83/121 (68.60%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MP++V+NMGGEM+YIL QRL AQNVP +KA KVL DV+RTMY+P FL+ELFKPQ+IY+  +TKQIFDKLAHSSIM+LN++SM+KL+DLMTMG KYQ++ C  P Q LQVTL HL+ L ++V
Sbjct:   19 MPIIVLNMGGEMIYILNQRLQAQNVPLDKARKVLGDVIRTMYTPMFLEELFKPQEIYTMASTKQIFDKLAHSSIMRLNKTSMDKLFDLMTMGVKYQLISCRSPHQYLQVTLNHLDILAEMV 139          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: G4Z7F0_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4Z7F0_PHYSP)

HSP 1 Score: 165 bits (417), Expect = 1.030e-47
Identity = 77/121 (63.64%), Postives = 102/121 (84.30%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MP+L++NMG EM+Y+L QRL AQN+P +K+SKVL+D+V+TMY+  F+ ELFKP ++YSN +T+QIFD+LAHSSIM+LN +SM+KLYDLM MGFKYQ+L CS  ++LLQVT+ HL   K LV
Sbjct:    8 MPMLIVNMGAEMIYVLDQRLKAQNIPRDKSSKVLEDIVKTMYNETFMAELFKPHRMYSNVSTRQIFDRLAHSSIMRLNTNSMDKLYDLMRMGFKYQVLSCSSADELLQVTMNHLSNTKNLV 128          
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Match: A0A1V9YEZ8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YEZ8_9STRA)

HSP 1 Score: 165 bits (418), Expect = 1.890e-47
Identity = 78/121 (64.46%), Postives = 104/121 (85.95%), Query Frame = 1
Query:    1 MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDELFKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLCSQPEQLLQVTLTHLETLKQLV 363
            MP+L+INMGGEM+Y+L QRL AQN+P++K++KVL DVV+TMY+  F+ ELF+P  +YSN +T+QIFD+LAHSSIM+LNQSSM+KLY LM MGFKY IL CS  +QL+QVT+ HL+++K +V
Sbjct:    9 MPMLLINMGGEMIYVLDQRLKAQNIPEDKSTKVLVDVVKTMYNTKFISELFRPHHMYSNLSTRQIFDRLAHSSIMRLNQSSMDKLYGLMRMGFKYNILACSSADQLVQVTMNHLQSIKTIV 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V690_9STRA1.490e-5680.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SHP3_9ARCH7.130e-5270.25Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1GFF1_9STRA8.580e-5272.73Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0VBR7_9CRYP1.080e-4965.29Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2VKF9_9DINO1.100e-4966.10Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A6H5K0W9_9PHAE1.360e-4966.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2QVI2_9STRA1.130e-4867.52Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A7S3HSD8_9STRA2.260e-4868.60Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
G4Z7F0_PHYSP1.030e-4763.64Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A1V9YEZ8_9STRA1.890e-4764.46Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig985contigH-akashiwo_Contig985:213954..214789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo108300
PFAMsOscp1
Model size363
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.69e-48
EggNOG OGsKOG4033@1|root,KOG4033@2759|Eukaryota,3Q8UP@4776|Peronosporales
Ec32 ortholog descriptionOrganic solute carrier protein 1
Ec32 orthologEc-14_006070.1
DescriptionOrganic solute transport protein 1
Cds size363
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.8342736-CDS-H-akashiwo_Contig985:213953..2140871681388067.8342736-CDS-H-akashiwo_Contig985:213953..214087Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig985 213954..214087 +
1681388067.8461716-CDS-H-akashiwo_Contig985:214270..2144601681388067.8461716-CDS-H-akashiwo_Contig985:214270..214460Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig985 214271..214460 +
1681388067.8591888-CDS-H-akashiwo_Contig985:214750..2147891681388067.8591888-CDS-H-akashiwo_Contig985:214750..214789Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig985 214751..214789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig985.1.1prot_H-akashiwo_Contig985.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig985 213954..214789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig985.1.1

>prot_H-akashiwo_Contig985.1.1 ID=prot_H-akashiwo_Contig985.1.1|Name=mRNA_H-akashiwo_Contig985.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=121bp
MPLLVINMGGEMVYILQQRLNAQNVPDEKASKVLQDVVRTMYSPGFLDEL
FKPQKIYSNQNTKQIFDKLAHSSIMKLNQSSMEKLYDLMTMGFKYQILLC
SQPEQLLQVTLTHLETLKQLV
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mRNA from alignment at H-akashiwo_Contig985:213954..214789+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig985.1.1 ID=mRNA_H-akashiwo_Contig985.1.1|Name=mRNA_H-akashiwo_Contig985.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=836bp|location=Sequence derived from alignment at H-akashiwo_Contig985:213954..214789+ (Heterosigma akashiwo CCMP452)
ATGCCACTTTTGGTGATAAATATGGGGGGAGAGATGGTATATATTCTCCA ACAACGACTGAATGCTCAGAATGTTCCAGATGAGAAAGCTTCAAAGGTTC TCCAAGATGTTGTTCGCACTATGTATAGCCCAGGGTAGGTTTCCCTTGCC TTTGTAGGATTCATCCTGCTGCTTCGTCTGGATTGATATATATACATACA TATATATCTATCTATCATCCTTGTACGGAAAATAATATGCAAAAAAAATC GTTGGATGGATGAAATGTTTGGTTTAGAAATTCAATTTGGGGGGGTTCAA CTTCATTTATGTTTCAGCTTTTTGGATGAGCTTTTCAAGCCCCAGAAAAT CTACTCAAACCAGAACACAAAGCAGATTTTTGATAAGCTGGCCCATAGCT CCATCATGAAACTGAACCAGTCATCAATGGAAAAACTCTACGACTTAATG ACCATGGGGTTCAAATACCAGATTCTTCTATGCTCTCAGCCAGAACAGCT TCTTCAGGTTTTTCTCTTCTCTTTTCTGGCAAAGGGGTAGTCGGGGAGCG GGGGATTCACATTGCCTTTGTCCTGTTGCCTCATGCAGAAATGGCACTCG TTTGCTAGGAAAAGCCCTGCTGCTTCAAATACATTTGACCCCACGCCATG GCAGACGAAGTGCTTCAGCTTCATAATATATACATCGCACGTTACATGCT GGTCCCTCTATAAACATAGATTTGAATTTAAATAAATAAAAAATAATTAA AAATTCCCCTTCCTTCTCTGCGCCTGCCTGATCACGGGGCGGGGCAGGTG ACACTGACCCACCTGGAGACACTGAAGCAGCTGGTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig985:213954..214789+

>mRNA_H-akashiwo_Contig985.1.1 ID=mRNA_H-akashiwo_Contig985.1.1|Name=mRNA_H-akashiwo_Contig985.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=363bp|location=Sequence derived from alignment at H-akashiwo_Contig985:213954..214789+ (Heterosigma akashiwo CCMP452)
ATGCCACTTTTGGTGATAAATATGGGGGGAGAGATGGTATATATTCTCCA
ACAACGACTGAATGCTCAGAATGTTCCAGATGAGAAAGCTTCAAAGGTTC
TCCAAGATGTTGTTCGCACTATGTATAGCCCAGGCTTTTTGGATGAGCTT
TTCAAGCCCCAGAAAATCTACTCAAACCAGAACACAAAGCAGATTTTTGA
TAAGCTGGCCCATAGCTCCATCATGAAACTGAACCAGTCATCAATGGAAA
AACTCTACGACTTAATGACCATGGGGTTCAAATACCAGATTCTTCTATGC
TCTCAGCCAGAACAGCTTCTTCAGGTGACACTGACCCACCTGGAGACACT
GAAGCAGCTGGTA
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