mRNA_H-akashiwo_Contig984.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig984.4.1
Unique NamemRNA_H-akashiwo_Contig984.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 347 bits (890), Expect = 5.810e-118
Identity = 166/188 (88.30%), Postives = 179/188 (95.21%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKALN 564
            TRPELAF VHKLQRTQ NPEPKHFEAVQRAFRYLKGTQSESLRLGGDL+LRA+SDSDFC  R+DGKSVTGY+LFLGDAPIVWS KLQGAVTTSTVEAEYLALRSAVKDIMWLR LL ++GCPQ +PTPVVEDNSAC+EWANDM++N+RNRHFHVSYHLAKEQVSLG IRMF+I+THDQVADILTKALN
Sbjct:  149 TRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALN 336          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 172 bits (437), Expect = 1.850e-46
Identity = 84/188 (44.68%), Postives = 122/188 (64.89%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKALN 564
            T PE+A+++H L +  ++P      A     RYL  T+ + + LGG L L AY+D+DFC+ R  G+S +G+ +FLG +PI+WS ++Q  VT +T EAEY++LR+AV D+MWL+ LL  LG  +Q   P+ EDN ACI WAND  +++  RH HVSYH  KE V    I + ++ T  Q+AD+ TK L+
Sbjct:  796 TFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGY-KQGCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLD 982          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: UPI000C1D5F2C (uncharacterized protein LOC111391063 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D5F2C)

HSP 1 Score: 150 bits (379), Expect = 1.330e-40
Identity = 77/188 (40.96%), Postives = 116/188 (61.70%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKA 558
            TRP++A+ VH + +  S P   H+ AV R  RYL+GT  +SL       L+LRAYSD+D+ +  ID KS TG+ +FLGD+ I W  K Q  V+ S+ EAEY A+ S   +I+WLR+LLAD+G     PTP+  DN++ I+ +++ V + R +H  +  HL +  +  G I + F+ +  Q+AD  TK+
Sbjct:  176 TRPDIAYGVHIVSQFVSAPTTVHWAAVVRILRYLRGTCFQSLLFPSTSSLVLRAYSDADWASDPIDRKSTTGFCVFLGDSLISWKSKKQTVVSCSSTEAEYRAMGSTTTEIVWLRWLLADMGVSHSSPTPMYCDNTSAIQISHNSVFHERTKHIKIDCHLVRHHLQTGTISLSFVSSSLQLADFFTKS 363          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.620e-40
Identity = 81/189 (42.86%), Postives = 112/189 (59.26%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLI--LRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKAL 561
            TRP++A AV +L R   NP  +H++A  +  RYLKGT++  +  GG +   L AYSD+D+ + R D +SV+G VL L  AP+VW    Q  V  ST EAEY+AL   VK+ MW R LL +LG  Q+  T + EDN   I  A +     R +H  + YH  +E++  G I + +I T +QVAD LTK L
Sbjct:  187 TRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: A0A6A4DK21_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DK21_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.340e-39
Identity = 79/189 (41.80%), Postives = 110/189 (58.20%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLI--LRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKAL 561
            TRP++A AV +L R   NP  +H++A  +  RYLKGT++  +   G +   L AYSD+D+ + R D +SV+G VL L  AP+VW    Q  V  ST E EY+AL   VK+ MW R LL +LG  Q+  T + EDN   I  A +     R +H  + YH  +E++  G I + +I T +QVAD LTK L
Sbjct:  107 TRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFDGKMPPELIAYSDADWGSDRDDRRSVSGTVLMLFSAPVVWKTGFQKTVALSTTETEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 295          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: A0A2I0W4P1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W4P1_9ASPA)

HSP 1 Score: 147 bits (372), Expect = 2.200e-39
Identity = 76/189 (40.21%), Postives = 115/189 (60.85%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLI-LRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKALN 564
            TRP++ +AV+K  +    P   +F+A++R  RY+KGT +  L L      L ++ DSD+   + D KS TGY  FLG + + W +K Q  +  S+ EAEY AL +A  D++W+R LL +LGCPQ +PT +  DN++ I  AN+ V + R +H  V  H  +E +   +I++  I T DQ+ADI TKAL+
Sbjct:  178 TRPDITYAVNKACQFMHQPTDANFDALKRILRYIKGTLNIGLPLSRHSFDLSSFVDSDWTGDQKDRKSTTGYCTFLGRSLVTWCVKKQSTIARSSTEAEYRALAAAAADLIWIRQLLHELGCPQNNPTKLFCDNTSAIALANNPVFHARTKHIEVDCHYIRECIKNNSIQVHHISTKDQIADIFTKALS 366          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: UPI001E694486 (secreted RxLR effector protein 161-like n=1 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E694486)

HSP 1 Score: 142 bits (359), Expect = 2.220e-39
Identity = 73/190 (38.42%), Postives = 113/190 (59.47%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKALN 564
            TRP++A+AVH + +   +P   H+ AV R  RYL+GT+ +S+       L LRAYS +D+     D KS TG+ +FLGD+ I W  K Q  V+ S+ E EY A+ S   +I+WLR+LL+D+G P  +PTP+  DN + I+ A + V + R +H  +  H  +  +    I + F+ +  Q+AD+ TK L+
Sbjct:    9 TRPDIAYAVHVISQFVVSPTTVHWAAVLRILRYLQGTRFQSILFPSSSALELRAYSAADWAGDPTDRKSTTGFCIFLGDSLISWKSKKQDIVSRSSTEVEYRAMASTTTEIVWLRWLLSDMGIPLSEPTPMYCDNKSAIQIAYNSVFHERTKHIEIDCHFTRHHLQQRTITLPFVSSSLQIADLFTKTLS 198          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: UPI001E6976E5 (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E6976E5)

HSP 1 Score: 144 bits (363), Expect = 3.810e-39
Identity = 75/187 (40.11%), Postives = 112/187 (59.89%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRL--GGDLILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTK 555
            TRP++A+AVH + +   +P   H+ AV R  RYL+GTQ +SL       L L AYSD+D+    ID KS TG+ +FLG++ I W  K Q  V+ S+ EAEY A+ S   +I+WL +LL+D+G     PTP+  DN + I+ A++ V + R +H  +  H  +  +  G I + FI +  Q+AD+ TK
Sbjct:   82 TRPDIAYAVHVVSQFVVSPTTVHWAAVLRILRYLRGTQFQSLLFPSSSSLELCAYSDADWAGDPIDRKSTTGFCIFLGESLISWKSKKQDIVSRSSTEAEYRAMASTTTEIVWLHWLLSDMGISLSQPTPMYCDNKSAIQIAHNSVFHERTKHIEIDCHFTRHHLQHGTITLPFISSSLQIADLFTK 268          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: A0A2N9FRH6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FRH6_FAGSY)

HSP 1 Score: 144 bits (362), Expect = 5.370e-39
Identity = 72/188 (38.30%), Postives = 107/188 (56.91%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGD--LILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKA 558
            TRP++++AVH++ +  S P   H+ AV R  +YLK T    L       LILRAY D+D+     D +S TGY   LG + I W  K Q  V  S+ EAEY AL     +++WLR+LL DLG      TP+  DN + I+ A + V + R +H  +  HL +  +  G++++  + +HDQ+ADI TK+
Sbjct:   82 TRPDISYAVHQVSQFMSAPRSTHYAAVLRILQYLKSTLFHGLHFSAQSPLILRAYFDADWAEDPTDRRSTTGYCFLLGSSLISWRSKKQSVVARSSTEAEYCALTDTTSELLWLRWLLQDLGVSTSSATPIYCDNRSAIQIARNDVFHERTKHIEIDCHLVRHHLLQGSLQLISVSSHDQLADIFTKS 269          
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Match: UPI001E695AE6 (uncharacterized mitochondrial protein AtMg00810-like n=3 Tax=Trifolium pratense TaxID=57577 RepID=UPI001E695AE6)

HSP 1 Score: 146 bits (368), Expect = 5.580e-39
Identity = 76/187 (40.64%), Postives = 113/187 (60.43%), Query Frame = 1
Query:    1 TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRL--GGDLILRAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYLALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNRHFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTK 555
            TRP++A+AVH + +   +P   H+ AV R  RYL+GTQ +SL       L L AYSD+D+    ID KS TG+ +FLG++ I W  K Q  V+ S+ EAEY A+ S   +I+WLR+LL+D+G     PTP+  DN + I+ A++ V + R +H  +  H  +  +  G I + FI +  Q+AD+ TK
Sbjct:  176 TRPDIAYAVHVVSQFVVSPTTVHWAAVLRILRYLRGTQFQSLLFPSSSSLELCAYSDADWAGDPIDRKSTTGFCIFLGESLISWKSKKQDIVSRSSTEAEYRAMASTTTEIVWLRWLLSDMGISLSQPTPMYCDNKSAIQIAHNSVFHERTKHIEIDCHFTRHHLQHGTITLPFISSSLQIADLFTK 362          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig984.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK5.810e-11888.30Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y1P1_HETAK1.850e-4644.68Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI000C1D5F2C1.330e-4040.96uncharacterized protein LOC111391063 n=2 Tax=Olea ... [more]
A0A6A3JMT1_9STRA2.620e-4042.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4DK21_9STRA1.340e-3941.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2I0W4P1_9ASPA2.200e-3940.21Retrovirus-related Pol polyprotein from transposon... [more]
UPI001E6944862.220e-3938.42secreted RxLR effector protein 161-like n=1 Tax=Tr... [more]
UPI001E6976E53.810e-3940.11uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A2N9FRH6_FAGSY5.370e-3938.30Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI001E695AE65.580e-3940.64uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig984contigH-akashiwo_Contig984:238817..239380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28532.XP_010527127.1
PFAMsRVT_2
Model size564
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.46e-38
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3884A@33090|Viridiplantae,3GPQE@35493|Streptophyta
Descriptionmitochondrial protein AtMg00810-like
Cds size564
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.60922-CDS-H-akashiwo_Contig984:238816..2393801681388067.60922-CDS-H-akashiwo_Contig984:238816..239380Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 238817..239380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig984.4.1prot_H-akashiwo_Contig984.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig984 238817..239380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig984.4.1

>prot_H-akashiwo_Contig984.4.1 ID=prot_H-akashiwo_Contig984.4.1|Name=mRNA_H-akashiwo_Contig984.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=188bp
TRPELAFAVHKLQRTQSNPEPKHFEAVQRAFRYLKGTQSESLRLGGDLIL
RAYSDSDFCAGRIDGKSVTGYVLFLGDAPIVWSLKLQGAVTTSTVEAEYL
ALRSAVKDIMWLRYLLADLGCPQQDPTPVVEDNSACIEWANDMVINRRNR
HFHVSYHLAKEQVSLGAIRMFFIRTHDQVADILTKALN
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mRNA from alignment at H-akashiwo_Contig984:238817..239380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig984.4.1 ID=mRNA_H-akashiwo_Contig984.4.1|Name=mRNA_H-akashiwo_Contig984.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=564bp|location=Sequence derived from alignment at H-akashiwo_Contig984:238817..239380- (Heterosigma akashiwo CCMP452)
ACCAGACCGGAGTTGGCCTTTGCAGTCCATAAGCTTCAGCGCACTCAAAG TAACCCGGAGCCCAAGCATTTCGAGGCGGTTCAGCGTGCGTTTCGGTACC TCAAGGGCACTCAGTCCGAGTCGCTGCGTTTGGGTGGTGATCTAATACTG CGGGCATATTCTGATTCAGATTTTTGTGCTGGCCGTATTGATGGAAAGTC AGTTACAGGCTATGTTCTCTTTTTGGGTGACGCGCCTATAGTTTGGTCTT TAAAGCTTCAAGGGGCGGTCACTACCTCTACAGTGGAGGCTGAGTATCTG GCCCTTCGTTCGGCTGTCAAGGACATCATGTGGCTTCGCTATCTTCTTGC TGATCTGGGGTGCCCTCAGCAAGATCCCACTCCTGTTGTAGAAGACAACA GTGCTTGTATTGAGTGGGCAAATGACATGGTGATTAACAGAAGAAATAGG CATTTCCATGTATCCTATCATCTTGCTAAGGAGCAGGTGAGCCTTGGGGC TATCAGAATGTTCTTCATTAGAACTCATGACCAGGTAGCTGATATCCTCA CTAAAGCTCTAAAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig984:238817..239380-

>mRNA_H-akashiwo_Contig984.4.1 ID=mRNA_H-akashiwo_Contig984.4.1|Name=mRNA_H-akashiwo_Contig984.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=564bp|location=Sequence derived from alignment at H-akashiwo_Contig984:238817..239380- (Heterosigma akashiwo CCMP452)
ACCAGACCGGAGTTGGCCTTTGCAGTCCATAAGCTTCAGCGCACTCAAAG
TAACCCGGAGCCCAAGCATTTCGAGGCGGTTCAGCGTGCGTTTCGGTACC
TCAAGGGCACTCAGTCCGAGTCGCTGCGTTTGGGTGGTGATCTAATACTG
CGGGCATATTCTGATTCAGATTTTTGTGCTGGCCGTATTGATGGAAAGTC
AGTTACAGGCTATGTTCTCTTTTTGGGTGACGCGCCTATAGTTTGGTCTT
TAAAGCTTCAAGGGGCGGTCACTACCTCTACAGTGGAGGCTGAGTATCTG
GCCCTTCGTTCGGCTGTCAAGGACATCATGTGGCTTCGCTATCTTCTTGC
TGATCTGGGGTGCCCTCAGCAAGATCCCACTCCTGTTGTAGAAGACAACA
GTGCTTGTATTGAGTGGGCAAATGACATGGTGATTAACAGAAGAAATAGG
CATTTCCATGTATCCTATCATCTTGCTAAGGAGCAGGTGAGCCTTGGGGC
TATCAGAATGTTCTTCATTAGAACTCATGACCAGGTAGCTGATATCCTCA
CTAAAGCTCTAAAT
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