mRNA_H-akashiwo_Contig983.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig983.2.1
Unique NamemRNA_H-akashiwo_Contig983.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig983.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig983contigH-akashiwo_Contig983:227522..228140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size428
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.3623528-UTR-H-akashiwo_Contig983:227521..2275351681388067.3623528-UTR-H-akashiwo_Contig983:227521..227535Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig983 227522..227535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.37627-CDS-H-akashiwo_Contig983:227535..2278361681388067.37627-CDS-H-akashiwo_Contig983:227535..227836Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig983 227536..227836 +
1681388067.3852575-CDS-H-akashiwo_Contig983:228027..2281401681388067.3852575-CDS-H-akashiwo_Contig983:228027..228140Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig983 228028..228140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig983.2.1prot_H-akashiwo_Contig983.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig983 227536..228140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig983.2.1

>prot_H-akashiwo_Contig983.2.1 ID=prot_H-akashiwo_Contig983.2.1|Name=mRNA_H-akashiwo_Contig983.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=138bp
MFQSPVKSLLGKAKGNAATSDSRSRGEKKRGSSRQPPPVSNLFVSKVSFS
GSLLTALVQEASTRLDDEDMEGLLHGYRLVHEKHVTTDFEERKETIETEI
SIQSYTTTGMRGLFYSHHGTEISEERYREFQQLDEDDQ
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mRNA from alignment at H-akashiwo_Contig983:227522..228140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig983.2.1 ID=mRNA_H-akashiwo_Contig983.2.1|Name=mRNA_H-akashiwo_Contig983.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=619bp|location=Sequence derived from alignment at H-akashiwo_Contig983:227522..228140+ (Heterosigma akashiwo CCMP452)
AAAACAGGGCCATCATGTTCCAATCTCCTGTCAAGTCTTTGCTTGGAAAG
GCAAAAGGAAATGCAGCGACAAGTGATTCTCGCTCCCGGGGAGAAAAGAA
GAGGGGGTCTTCTCGTCAGCCTCCCCCGGTATCGAATCTCTTCGTGTCCA
AGGTTTCATTCAGCGGGTCTTTACTAACTGCTCTCGTCCAAGAAGCCTCA
ACCCGTCTAGACGACGAAGACATGGAGGGTCTTCTGCATGGATACCGCCT
GGTTCACGAAAAACACGTCACCACCGACTTTGAAGAACGAAAGGAAACGA
TAGAGACCGAAATATGTGAGTAGCACGAGCCCCTTCCTCCATCTTCTCTC
TATAGGCCTTGCGTCTTGCCCCAAGGCCACAAACCTCACTCACGCAAACT
AACTAGCTAACAGGGTTCGCAATTACTTTCCACCTTTTTTTTCTCTTGAG
TCACAAGCCTCACATGAACTAGTTACAAACCATTGATTTTTATTCACCAT
GGATAGCAATCCAGTCCTACACAACAACTGGGATGCGTGGACTTTTCTAT
TCTCATCACGGTACTGAGATTTCTGAAGAAAGGTACCGCGAATTTCAACA
GCTAGATGAAGATGACCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig983:227522..228140+

>mRNA_H-akashiwo_Contig983.2.1 ID=mRNA_H-akashiwo_Contig983.2.1|Name=mRNA_H-akashiwo_Contig983.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=414bp|location=Sequence derived from alignment at H-akashiwo_Contig983:227522..228140+ (Heterosigma akashiwo CCMP452)
ATGTTCCAATCTCCTGTCAAGTCTTTGCTTGGAAAGGCAAAAGGAAATGC
AGCGACAAGTGATTCTCGCTCCCGGGGAGAAAAGAAGAGGGGGTCTTCTC
GTCAGCCTCCCCCGGTATCGAATCTCTTCGTGTCCAAGGTTTCATTCAGC
GGGTCTTTACTAACTGCTCTCGTCCAAGAAGCCTCAACCCGTCTAGACGA
CGAAGACATGGAGGGTCTTCTGCATGGATACCGCCTGGTTCACGAAAAAC
ACGTCACCACCGACTTTGAAGAACGAAAGGAAACGATAGAGACCGAAATA
TCAATCCAGTCCTACACAACAACTGGGATGCGTGGACTTTTCTATTCTCA
TCACGGTACTGAGATTTCTGAAGAAAGGTACCGCGAATTTCAACAGCTAG
ATGAAGATGACCAG
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