mRNA_H-akashiwo_Contig98.43.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.43.1
Unique NamemRNA_H-akashiwo_Contig98.43.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:1749699..1750343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons2
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.3378708-CDS-H-akashiwo_Contig98:1749698..17498721681388065.3378708-CDS-H-akashiwo_Contig98:1749698..1749872Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1749699..1749872 -
1681388065.3494148-CDS-H-akashiwo_Contig98:1750256..17503431681388065.3494148-CDS-H-akashiwo_Contig98:1750256..1750343Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1750257..1750343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.43.1prot_H-akashiwo_Contig98.43.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 1749699..1750343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.43.1

>prot_H-akashiwo_Contig98.43.1 ID=prot_H-akashiwo_Contig98.43.1|Name=mRNA_H-akashiwo_Contig98.43.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=87bp
SQVKRLVAFDTAAVEADAGMLANVLKSLRICEVNQNGKRYTPPKKTDEED
ATTEDVFAESTTAKGKYIPKEGIFSLEQFLVRTSNC*
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mRNA from alignment at H-akashiwo_Contig98:1749699..1750343-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.43.1 ID=mRNA_H-akashiwo_Contig98.43.1|Name=mRNA_H-akashiwo_Contig98.43.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=645bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1749699..1750343- (Heterosigma akashiwo CCMP452)
TCGCAGGTGAAGCGGCTGGTGGCCTTCGACACGGCCGCGGTGGAGGCGGA
CGCGGGGATGCTGGCCAACGTGCTCAAGAGCCTGCGGGTGGGCGGTGGGC
GGTGGGAGGAGGGGGCGTCTGCTGCTGGGGTGTGCGGGTGCCCGCTGCCT
CCGGGGCGTGGGCAAGAGAGGAAGGGAAAGCGGCGGTGGCGGTGGACTAG
GGCGTGCTCTGGTCGATGGGGGGGGGGGGCATATCACGCCGTTGTGTGGG
GAATTATTACTTGTTGAATTTCGGGTGCGCAAAACTGTGTCTCTCTCTTG
CTTGAGCTTCCTCTTGGCCCTAGCTACGGGGGCGTGTGTTTGTTATGTAC
TTCCAAGCATGGACGTACTGCTCTGCCTAGGTAGATATGGCTCAGAGGCT
AATGGTTTGCTTCCAGACACAAGCCAAACAAGGGTATTTGTGTGCATGTT
GTCTTGGCACTGCTCATGCAGATTTGTGAGGTGAACCAAAATGGGAAGCG
ATACACTCCGCCAAAGAAGACAGACGAGGAGGATGCAACAACAGAGGATG
TTTTTGCAGAATCTACAACAGCAAAGGGGAAGTACATCCCAAAGGAAGGA
ATTTTTTCTCTGGAACAGTTCCTGGTAAGGACCTCCAACTGTTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:1749699..1750343-

>mRNA_H-akashiwo_Contig98.43.1 ID=mRNA_H-akashiwo_Contig98.43.1|Name=mRNA_H-akashiwo_Contig98.43.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=261bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1749699..1750343- (Heterosigma akashiwo CCMP452)
TCGCAGGTGAAGCGGCTGGTGGCCTTCGACACGGCCGCGGTGGAGGCGGA
CGCGGGGATGCTGGCCAACGTGCTCAAGAGCCTGCGGATTTGTGAGGTGA
ACCAAAATGGGAAGCGATACACTCCGCCAAAGAAGACAGACGAGGAGGAT
GCAACAACAGAGGATGTTTTTGCAGAATCTACAACAGCAAAGGGGAAGTA
CATCCCAAAGGAAGGAATTTTTTCTCTGGAACAGTTCCTGGTAAGGACCT
CCAACTGTTGA
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