mRNA_H-akashiwo_Contig977.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig977.2.1
Unique NamemRNA_H-akashiwo_Contig977.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A6V1VKR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VKR3_HETAK)

HSP 1 Score: 104 bits (260), Expect = 5.880e-26
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 SAQRPSTILGTSPISGGSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK 150
            SAQRPSTILGTSPISGGSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK
Sbjct:   60 SAQRPSTILGTSPISGGSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK 109
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A7S3FHQ0_9VIRI (Hypothetical protein n=2 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FHQ0_9VIRI)

HSP 1 Score: 49.7 bits (117), Expect = 1.300e-5
Identity = 21/37 (56.76%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   40 ISGGSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK 150
            + GG  R+ IKP  LP++++YDHCP+C RVR+ LGLK
Sbjct:   26 VKGGPPRV-IKP-VLPKIYVYDHCPFCVRVRLALGLK 60
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A662XZA8_9STRA (GST N-terminal domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZA8_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.340e-5
Identity = 17/27 (62.96%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:   70 KPQALPRVFLYDHCPYCTRVRIILGLK 150
            K + LP++F+YDHCPYC R R+I GLK
Sbjct:   33 KAEPLPKLFIYDHCPYCVRARVIFGLK 59
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A067C5M8_SAPPC (GST N-terminal domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5M8_SAPPC)

HSP 1 Score: 47.8 bits (112), Expect = 6.250e-5
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   43 SGGSDRLAIKPQ-ALPRVFLYDHCPYCTRVRIILGLK 150
            +  S +LA K   ALPR+++YDHCP+C R R+I GLK
Sbjct:   33 AAASKKLAAKAAPALPRLYIYDHCPFCVRTRMIFGLK 69
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A0G4H2N0_9ALVE (Uncharacterized protein n=2 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H2N0_9ALVE)

HSP 1 Score: 47.8 bits (112), Expect = 6.440e-5
Identity = 22/49 (44.90%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    4 AQRPSTILGTSPISGGSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK 150
            A+ PS +    P     DR+ + P  LP++++YDHCP+C R RII GLK
Sbjct:   35 AESPSRLAAVVP----DDRI-VPPGPLPQLYVYDHCPFCVRARIIFGLK 78
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A7S2V214_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V214_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 6.540e-5
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 SAQRPSTILGTSPISG-----GSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK 150
            S  RP+  L  S +S       + R+ + P  LP+V++YDHCP+C RVR+ LGLK
Sbjct:   32 SITRPNIGLSMSAVSAPVSVPAAPRIVLDP--LPKVYVYDHCPFCVRVRLALGLK 84
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A7S2XXQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXQ8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.840e-5
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   10 RPSTILGTSPISGGSD-RLAIKPQALPRVFLYDHCPYCTRVRIILGLK 150
            R S+ L TS +S  SD     K   LP++++YDHCP+C R R+I GLK
Sbjct:   48 RASSALSTSSLSYCSDDEKPKKKNYLPQLYIYDHCPFCVRARMIFGLK 95
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BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Match: A0A061QZU5_9CHLO (Family glutaredoxin (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZU5_9CHLO)

HSP 1 Score: 47.4 bits (111), Expect = 9.040e-5
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 1 
Query:   67 IKPQALPRVFLYDHCPYCTRVRIILGLK 150
            + P  LP+V++YDHCP+C RVR+ LG K
Sbjct:   73 VVPDTLPKVYVYDHCPFCVRVRVALGYK 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6V1VKR3_HETAK5.880e-26100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3FHQ0_9VIRI1.300e-556.76Hypothetical protein n=2 Tax=Prasinoderma singular... [more]
A0A662XZA8_9STRA2.340e-562.96GST N-terminal domain-containing protein n=1 Tax=N... [more]
A0A067C5M8_SAPPC6.250e-554.05GST N-terminal domain-containing protein n=2 Tax=S... [more]
A0A0G4H2N0_9ALVE6.440e-544.90Uncharacterized protein n=2 Tax=Chromera velia CCM... [more]
A0A7S2V214_9STRA6.540e-543.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2XXQ8_9STRA8.840e-547.92Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A061QZU5_9CHLO9.040e-557.14Family glutaredoxin (Fragment) n=1 Tax=Tetraselmis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig977contigH-akashiwo_Contig977:146975..147556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008603936.1
PFAMsGST_N_3,Glutaredoxin2_C
Model size152
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.62e-05
EggNOG OGsCOG2999@1|root,2RYF1@2759|Eukaryota
DescriptionGlutaredoxin 2, C terminal domain
Cds size150
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388065.0201051-CDS-H-akashiwo_Contig977:146976..1469951681388065.0201051-CDS-H-akashiwo_Contig977:146976..146995Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig977 146977..146995 -
1681388065.035102-CDS-H-akashiwo_Contig977:147425..1475561681388065.035102-CDS-H-akashiwo_Contig977:147425..147556Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig977 147426..147556 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig977.2.1prot_H-akashiwo_Contig977.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig977 146977..147556 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig977.2.1

>prot_H-akashiwo_Contig977.2.1 ID=prot_H-akashiwo_Contig977.2.1|Name=mRNA_H-akashiwo_Contig977.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=50bp
SAQRPSTILGTSPISGGSDRLAIKPQALPRVFLYDHCPYCTRVRIILGLK
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mRNA from alignment at H-akashiwo_Contig977:146975..147556-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig977.2.1 ID=mRNA_H-akashiwo_Contig977.2.1|Name=mRNA_H-akashiwo_Contig977.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=582bp|location=Sequence derived from alignment at H-akashiwo_Contig977:146975..147556- (Heterosigma akashiwo CCMP452)
AGCGCTCAACGCCCTTCAACTATCCTTGGGACTTCTCCCATCAGTGGAGG
AAGCGATAGACTGGCAATTAAACCACAAGCGCTGCCACGAGTCTTTTTGT
ATGACCACTGCCCTTACTGCACAAGAGTTAGGTGTGTTTGGTCGAGTGCT
ACTTCATTGGTCGGGGAGGGAGGGAAAAAAAACGCCTTCTTTTTTAGTAC
TAATGTACATGCTGAAACGACTGGCGTTTCAAAACACTTCATTATTAGTA
GCATTTTTCATTGCAAACAATATTGAAACAGCTGATTGTAAAGGAACAGT
GTGATTGCACTCAAATTGTTTTTTGAAAGAGTGATGAATATTCGAAAGAG
TGACGGGTAGAGGGGGTTCGGGTTCTTTTTTTTTTTTCACGTTCATCATA
CATACAATGTGCTCCTATCACATCCTGAGCAACAGTCATTGACTTCTTGC
ACGTGCCCATGGTCTCCGAACACTTGGTCGGACTCTGTCACCGGTCTTGA
CCATCACACTACTATAGTTGTTTTGTTTGTTACTCTTGTGATTTCTCCTC
ATTTGATCTAGAATCATTCTTGGACTGAAAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig977:146975..147556-

>mRNA_H-akashiwo_Contig977.2.1 ID=mRNA_H-akashiwo_Contig977.2.1|Name=mRNA_H-akashiwo_Contig977.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=150bp|location=Sequence derived from alignment at H-akashiwo_Contig977:146975..147556- (Heterosigma akashiwo CCMP452)
AGCGCTCAACGCCCTTCAACTATCCTTGGGACTTCTCCCATCAGTGGAGG
AAGCGATAGACTGGCAATTAAACCACAAGCGCTGCCACGAGTCTTTTTGT
ATGACCACTGCCCTTACTGCACAAGAGTTAGAATCATTCTTGGACTGAAA
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