mRNA_H-akashiwo_Contig975.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig975.2.1
Unique NamemRNA_H-akashiwo_Contig975.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA)

HSP 1 Score: 203 bits (516), Expect = 7.830e-61
Identity = 104/163 (63.80%), Postives = 124/163 (76.07%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNA-------------DPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLLE 450
            MT VL+++ED L WR  +Y R+DGS  + DRQ ++  FNA             D  + VFLLSTRAGGLGINL AADTC+IFDSDWNPHQDSQA DR HR+GQTRPVAVYRL++AGSV++EMMEK +SKKKLERMAIVGGDFR+AG R+  A +A  L +LLE
Sbjct:  235 MTGVLNVMEDYLMWRRWKYCRIDGSTKIDDRQKQMDVFNAEKTSGADGGRNESDERMFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTRPVAVYRLLTAGSVDIEMMEKQISKKKLERMAIVGGDFRKAGARSKGAFSAKALSSLLE 397          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A7S3UZX1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZX1_HETAK)

HSP 1 Score: 200 bits (509), Expect = 4.940e-60
Identity = 110/141 (78.01%), Postives = 119/141 (84.40%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVE--VFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRA 417
            M  VLDLLE+ L  RG  + RLDG V+   R A I+ FN DPA    VFLL+T+AGG+G+NL +ADT VIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRA
Sbjct:  297 MRRVLDLLEEFLAARGHRFERLDGMVTGAARAAAIRRFN-DPAGRSFVFLLTTKAGGVGLNLQSADTVVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRA 436          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A6U1QEQ7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QEQ7_9STRA)

HSP 1 Score: 206 bits (525), Expect = 9.060e-60
Identity = 100/135 (74.07%), Postives = 116/135 (85.93%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRR 405
            MT VL ++ED LR RG  Y R+DGSV+V DRQ  I++FN+DP V +FLLSTRAGGLGINLAAADTC+I+DSDWNPHQDSQAQDR HR+GQ +PV VYR ++ GSVE+EMMEKA+SKKKLERMAIVGGDF  AGRR
Sbjct:  575 MTGVLSIIEDYLRNRGWRYCRIDGSVNVFDRQEMIESFNSDPDVFIFLLSTRAGGLGINLAAADTCIIYDSDWNPHQDSQAQDRCHRIGQKKPVMVYRFLTGGSVEIEMMEKAISKKKLERMAIVGGDFHMAGRR 709          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 1.100e-56
Identity = 99/150 (66.00%), Postives = 120/150 (80.00%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLLE 450
            MTS+LD+LED LR RG E+ R+DGS  V DRQ +I+ FN++P   VFLLSTRAGGLGINL AADTC++FDSDWNPHQDSQA  R HR+GQ +PV VYRL++ GSVE+EMM K +SKKKLER+A+ GGDF +AGRR    +T  +LR LLE
Sbjct:  604 MTSLLDVLEDYLRHRGWEFHRIDGSTDVLDRQRQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLE 753          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A7S2NXS4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXS4_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.250e-56
Identity = 94/152 (61.84%), Postives = 112/152 (73.68%), Query Frame = 1
Query:   34 LRWRGVEYARLDGSVSVQDRQARIQAFNA-------------DPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLLE 450
            L WR   Y R+DG+  + +RQ ++  FNA             D    VFLLSTRAGGLGINL AADTC+IFDSDWNPHQDSQA DR HR+GQT PVAVYRL++AGSV++EMMEK +SKKKLERMAI GGDFR+AGRR+    +A +L TLL+
Sbjct:    1 LLWRKWNYCRIDGTTKIDERQRQMDVFNAEKTGGADGKRNTSDDRTFVFLLSTRAGGLGINLTAADTCIIFDSDWNPHQDSQAMDRCHRIGQTNPVAVYRLLTAGSVDIEMMEKQISKKKLERMAITGGDFRKAGRRSKGEFSAKDLSTLLQ 152          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.600e-56
Identity = 98/150 (65.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLLE 450
            MTS+LD+LED LR RG E+ R+DGS  V DRQ++I+ FN++P   VFLLSTRAGGLGINL AADTC++FDSDWNPHQDSQA  R HR+GQ +PV VYRL++ GSVE+EMM K +SKKKLER+A+ GGDF +AG+R    +T  +LR LLE
Sbjct:  656 MTSLLDVLEDYLRHRGWEFHRIDGSTDVLDRQSQIEEFNSNPKFFVFLLSTRAGGLGINLCAADTCILFDSDWNPHQDSQAMARCHRIGQQKPVMVYRLLTTGSVEIEMMAKQISKKKLERVAVQGGDFGKAGKRTYGEMTVPHLRKLLE 805          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: W7TYC6_9STRA (Snf2 domanin containing helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYC6_9STRA)

HSP 1 Score: 197 bits (501), Expect = 5.210e-56
Identity = 97/149 (65.10%), Postives = 121/149 (81.21%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLL 447
            MT +L +LED L +R  +Y R+DGSV V  RQ +I+AFN DP++  FLLSTRAGGLGINLA ADT +I+DSDWNPH+D+QAQDRAHR+GQT+ VAVYR+++ GSVE+EMME  +SKKKLER++I GGDFRQAGRR+   +T   LR LL
Sbjct:  658 MTEMLTVLEDYLHYRQWKYCRIDGSVKVDARQEQIEAFNKDPSIFCFLLSTRAGGLGINLAGADTVIIYDSDWNPHRDAQAQDRAHRIGQTKAVAVYRMLTIGSVEIEMMEAQISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLL 806          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A7S2BZ69_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BZ69_9STRA)

HSP 1 Score: 184 bits (467), Expect = 4.250e-55
Identity = 92/150 (61.33%), Postives = 116/150 (77.33%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRA-LTAANLRTLL 447
            MT++LD+LED LR R   Y R+DG+V + +RQ  + AFN +  +  F+LSTRAGGLGINL AADT +IFDSDWNPHQD+QAQDR HR+GQTRPV VYRL++ GSVE++MMEK VSKKKLERM + GG+F + G+R     +T  +LR LL
Sbjct:   81 MTALLDILEDYLRNREWRYCRIDGNVKIGERQQSMDAFNKEEDIFAFMLSTRAGGLGINLQAADTVIIFDSDWNPHQDAQAQDRCHRIGQTRPVVVYRLLTIGSVEIDMMEKQVSKKKLERMCVSGGNFARPGKRTGNTKITVDDLRNLL 230          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A835Z5K9_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5K9_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.440e-53
Identity = 99/152 (65.13%), Postives = 118/152 (77.63%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFN---ADPAVEVFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLL 447
            MTS+L +LED LR R   Y R+DG+ ++ DRQA I AFN    +  + VFLLSTRAGGLGINL AADT VIFDSDWNPHQDSQAQDR HR+GQ  PV VYRL++  SVE++MMEK +SKKKLERMA+ GGDFR+ G+R+  ALT+  LR LL
Sbjct:  376 MTSMLTILEDYLRHRDWGYCRIDGTSALIDRQASIDAFNNGETNDDLFVFLLSTRAGGLGINLTAADTVVIFDSDWNPHQDSQAQDRCHRIGQQHPVVVYRLLTLSSVEIDMMEKQISKKKLERMAVAGGDFRKVGQRSRGALTSQALRGLL 527          
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Match: A0A1Z5J784_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J784_FISSO)

HSP 1 Score: 188 bits (478), Expect = 4.790e-53
Identity = 95/162 (58.64%), Postives = 121/162 (74.69%), Query Frame = 1
Query:    1 MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVE------------VFLLSTRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLVSAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLLE 450
            MTSVL+++ED LR+R   Y R+DGS  + +RQ ++  FNA+  ++            VFLLSTRAGGLGINL AADTC+IFDSDWNP  DSQA DR HR+GQTRPVAVYRL++A SV++EMMEK +SKKKLERM I GGDF++AGRR+   +    L++LL+
Sbjct:  575 MTSVLNVMEDYLRFRKWSYCRIDGSTEINERQRQMDKFNAEKYLDNGKRNTADDRLFVFLLSTRAGGLGINLTAADTCIIFDSDWNPFADSQAMDRCHRIGQTRPVAVYRLITANSVDIEMMEKQISKKKLERMTIAGGDFKKAGRRSGGDIDVEGLQSLLQ 736          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig975.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0BX46_9STRA7.830e-6163.80Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S3UZX1_HETAK4.940e-6078.01Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6U1QEQ7_9STRA9.060e-6074.07Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LDG7_ECTSI1.100e-5666.00Putative ATP-dependent helicase YFR038W n=1 Tax=Ec... [more]
A0A7S2NXS4_9STRA1.250e-5661.84Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5KPB1_9PHAE1.600e-5665.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TYC6_9STRA5.210e-5665.10Snf2 domanin containing helicase n=3 Tax=Monodopsi... [more]
A0A7S2BZ69_9STRA4.250e-5561.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A835Z5K9_9STRA1.440e-5365.13SNF2 family N-terminal domain-containing protein n... [more]
A0A1Z5J784_FISSO4.790e-5358.64Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig975contigH-akashiwo_Contig975:147922..148594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LDG7
PFAMsHelicase_C,SNF2_N
Model size450
Max annot lvl2759|Eukaryota
KEGG koko:K19001
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.8e-57
EggNOG OGsCOG0553@1|root,KOG0385@2759|Eukaryota
Descriptionhelicase activity
Cds size450
COG categoryKL
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.6031692-CDS-H-akashiwo_Contig975:147921..1483171681388064.6031692-CDS-H-akashiwo_Contig975:147921..148317Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig975 147922..148317 -
1681388064.6163893-CDS-H-akashiwo_Contig975:148540..1485941681388064.6163893-CDS-H-akashiwo_Contig975:148540..148594Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig975 148541..148594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig975.2.1prot_H-akashiwo_Contig975.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig975 147922..148594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig975.2.1

>prot_H-akashiwo_Contig975.2.1 ID=prot_H-akashiwo_Contig975.2.1|Name=mRNA_H-akashiwo_Contig975.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
MTSVLDLLEDLLRWRGVEYARLDGSVSVQDRQARIQAFNADPAVEVFLLS
TRAGGLGINLAAADTCVIFDSDWNPHQDSQAQDRAHRLGQTRPVAVYRLV
SAGSVEVEMMEKAVSKKKLERMAIVGGDFRQAGRRASRALTAANLRTLLE
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mRNA from alignment at H-akashiwo_Contig975:147922..148594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig975.2.1 ID=mRNA_H-akashiwo_Contig975.2.1|Name=mRNA_H-akashiwo_Contig975.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=673bp|location=Sequence derived from alignment at H-akashiwo_Contig975:147922..148594- (Heterosigma akashiwo CCMP452)
ATGACCTCCGTGCTGGACCTGCTGGAGGACCTGCTGCGGTGGCGGGGCGT CGAGGTGTGTTCTGTGTTCCTGTGTTATGTGTTCCTGTCCCGCCTCTATA CCCTCCTCCATACTGCCTCCCTTTGTTATATGTTCCTGTGTTTTGTGTTC CTGTGTTTCCGCATGCCATCTGTTCTGGTGGTGGGTGTGGGTGTGGGTGT GCGTGTTTTACAAAGTGTTGATGCCTGTAGTATCCTCAGGTGCATCTTTT CCCCACCCCCCTCCCCCCGGCGTGCAGTACGCGAGGCTCGACGGTTCGGT CTCGGTGCAGGACCGGCAGGCGCGCATCCAGGCCTTCAACGCGGACCCGG CGGTGGAGGTGTTCCTGCTCTCCACGCGGGCGGGCGGCCTGGGCATCAAC CTGGCGGCCGCGGACACCTGCGTGATCTTCGACTCGGACTGGAACCCGCA CCAGGACTCGCAGGCGCAGGACCGTGCGCACCGGCTGGGCCAGACGCGGC CCGTGGCCGTCTACCGGCTCGTCTCCGCGGGCAGCGTGGAGGTGGAGATG ATGGAGAAGGCCGTCTCGAAGAAGAAGCTCGAGCGCATGGCCATCGTGGG CGGGGACTTCCGGCAGGCGGGCCGGCGGGCCTCGCGCGCGCTCACGGCCG CCAACCTGCGCACGCTGCTGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig975:147922..148594-

>mRNA_H-akashiwo_Contig975.2.1 ID=mRNA_H-akashiwo_Contig975.2.1|Name=mRNA_H-akashiwo_Contig975.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig975:147922..148594- (Heterosigma akashiwo CCMP452)
ATGACCTCCGTGCTGGACCTGCTGGAGGACCTGCTGCGGTGGCGGGGCGT
CGAGTACGCGAGGCTCGACGGTTCGGTCTCGGTGCAGGACCGGCAGGCGC
GCATCCAGGCCTTCAACGCGGACCCGGCGGTGGAGGTGTTCCTGCTCTCC
ACGCGGGCGGGCGGCCTGGGCATCAACCTGGCGGCCGCGGACACCTGCGT
GATCTTCGACTCGGACTGGAACCCGCACCAGGACTCGCAGGCGCAGGACC
GTGCGCACCGGCTGGGCCAGACGCGGCCCGTGGCCGTCTACCGGCTCGTC
TCCGCGGGCAGCGTGGAGGTGGAGATGATGGAGAAGGCCGTCTCGAAGAA
GAAGCTCGAGCGCATGGCCATCGTGGGCGGGGACTTCCGGCAGGCGGGCC
GGCGGGCCTCGCGCGCGCTCACGGCCGCCAACCTGCGCACGCTGCTGGAG
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