mRNA_H-akashiwo_Contig974.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig974.2.1
Unique NamemRNA_H-akashiwo_Contig974.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig974.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig974contigH-akashiwo_Contig974:61646..62310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size665
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.4287908-UTR-H-akashiwo_Contig974:61645..616931681388064.4287908-UTR-H-akashiwo_Contig974:61645..61693Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig974 61646..61693 +
1681388064.4488907-UTR-H-akashiwo_Contig974:62062..623101681388064.4488907-UTR-H-akashiwo_Contig974:62062..62310Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig974 62063..62310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.4387572-CDS-H-akashiwo_Contig974:61693..620621681388064.4387572-CDS-H-akashiwo_Contig974:61693..62062Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig974 61694..62062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig974.2.1prot_H-akashiwo_Contig974.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig974 61694..62062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig974.2.1

>prot_H-akashiwo_Contig974.2.1 ID=prot_H-akashiwo_Contig974.2.1|Name=mRNA_H-akashiwo_Contig974.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=123bp
MEAAADINTLCGQWVADDLPAASAGNDPGSPDEALIAIDDGQIFFNNGGG
GFANGSYTLDADGSYTARSRDESIKFYREGDALHVLFSGGGYNEDSDGDT
GILVIYHRNPDLPQYGFPRYEE*
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mRNA from alignment at H-akashiwo_Contig974:61646..62310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig974.2.1 ID=mRNA_H-akashiwo_Contig974.2.1|Name=mRNA_H-akashiwo_Contig974.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=665bp|location=Sequence derived from alignment at H-akashiwo_Contig974:61646..62310+ (Heterosigma akashiwo CCMP452)
CGGCAATGCCGGAAGAAAGCTCTTCACCTTCGCAGATTCTTCAGAAGAAT
GGAAGCAGCAGCAGATATTAATACCTTGTGCGGCCAGTGGGTCGCTGACG
ACCTTCCTGCTGCCAGTGCTGGTAATGATCCTGGCTCGCCCGATGAGGCA
CTCATTGCCATCGACGATGGTCAGATCTTCTTCAACAATGGTGGCGGCGG
CTTCGCCAACGGCTCATACACTTTGGACGCAGATGGCAGTTATACGGCGC
GAAGTCGTGATGAATCCATCAAGTTCTACAGGGAGGGCGACGCTCTTCAT
GTCCTTTTTTCTGGGGGCGGATACAATGAGGATTCTGATGGCGATACAGG
AATTCTGGTGATCTACCACAGGAACCCTGATCTACCACAGTACGGCTTTC
CAAGATATGAGGAATAATCCTCACAGCTGGACTCGTAATATTGAAATCGG
CGGTCAAATGATCAACCCTCCCTGTCGTTGTCAAGAAATGACACCACCAG
ACCATTTCATTTGTGAAGTGAAGAACGTGAAGCAGCATGATAGTCTTTCA
TTATTTGCTGCAGCATGATGTGATGAAGTGAAAAATGAATATTGACTCTT
CTCCTGAAAAGGTTTGTGGAACGAAATAATTTTTTCTTTTTTTGCTGGTG
GTGTGTGTTGGGACA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig974:61646..62310+

>mRNA_H-akashiwo_Contig974.2.1 ID=mRNA_H-akashiwo_Contig974.2.1|Name=mRNA_H-akashiwo_Contig974.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=369bp|location=Sequence derived from alignment at H-akashiwo_Contig974:61646..62310+ (Heterosigma akashiwo CCMP452)
ATGGAAGCAGCAGCAGATATTAATACCTTGTGCGGCCAGTGGGTCGCTGA
CGACCTTCCTGCTGCCAGTGCTGGTAATGATCCTGGCTCGCCCGATGAGG
CACTCATTGCCATCGACGATGGTCAGATCTTCTTCAACAATGGTGGCGGC
GGCTTCGCCAACGGCTCATACACTTTGGACGCAGATGGCAGTTATACGGC
GCGAAGTCGTGATGAATCCATCAAGTTCTACAGGGAGGGCGACGCTCTTC
ATGTCCTTTTTTCTGGGGGCGGATACAATGAGGATTCTGATGGCGATACA
GGAATTCTGGTGATCTACCACAGGAACCCTGATCTACCACAGTACGGCTT
TCCAAGATATGAGGAATAA
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