mRNA_H-akashiwo_Contig972.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig972.5.1
Unique NamemRNA_H-akashiwo_Contig972.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 81.3 bits (199), Expect = 1.140e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDG--SFTIPRST 276
            +++++  +EE+ +   +  T+    W R+ DDT++IW   ++  +EFL  LN IHP IK+    E+NGQ+PFLDVLV RN +G  S T+ R T
Sbjct:  286 ANLYLSSFEEEAI---NSSTLKPTHWYRYIDDTFVIWPHGRQKLEEFLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKT 375          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI0010FBB0A7 (uncharacterized protein LOC114944459 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FBB0A7)

HSP 1 Score: 77.0 bits (188), Expect = 2.190e-15
Identity = 37/85 (43.53%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSF 258
            ++IFME +E KV   L +  +  + W R+ DDT++IW   +E F +FL+ LN  H  I++    E+N QLPFLDVLV +N+DG+ 
Sbjct:   10 ANIFMEHFENKV---LKNALLKPSTWFRYVDDTFVIWNHGKETFPQFLDFLNYQHRSIQFIMEIEQNNQLPFLDVLVKKNDDGTL 91          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI001ED886C9 (uncharacterized protein LOC124164935 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED886C9)

HSP 1 Score: 78.2 bits (191), Expect = 1.240e-14
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFT 261
            ++ FMED+EE+    LS   +    + R+ DDT+++W   QE    FL+ +N +HP I++    EK+G LPFLDVL+ R EDGS +
Sbjct:  194 ANFFMEDFEERA---LSTAKIKPKYYFRYVDDTFIVWPHGQETLPAFLQHMNSLHPNIQFTMEMEKDGCLPFLDVLIRRKEDGSLS 276          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI0005F52B34 (uncharacterized protein LOC105562568 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52B34)

HSP 1 Score: 75.9 bits (185), Expect = 1.390e-14
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSF 258
            ++IFME ++ +++ K     +  + W R+ DDT++IW   +E   +FL  +N  HP I++    E+N Q+PFLDVLV RNEDG+ 
Sbjct:   10 ANIFMEHFKNEILKK---APLKPSTWFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTIEIEQNSQIPFLDVLVCRNEDGTL 91          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: A0A6P7H742_DIAVI (uncharacterized protein LOC114347923 n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7H742_DIAVI)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-14
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTIPRSTGNPHT 291
            +DI+ME +E    I LS   +    WLR+ DDT++IW   ++  D FL  LNGIHP I++    E    LPFLDVL+ +    SF+        HT
Sbjct:   26 ADIYMEHFE---TIALSSSNLKPTCWLRYVDDTFVIWPHGKDTLDLFLSHLNGIHPSIQFAMEVESEESLPFLDVLIQKQPPYSFSYSVYRKPTHT 118          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: A0A8K0G947_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0G947_9COLE)

HSP 1 Score: 75.5 bits (184), Expect = 1.950e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGS 255
            +++FMED E + +   S    +   WLR+ DDT++IW   +E  D FL+ LN IH KIK+    E N QLPFLDVLV + +D S
Sbjct:  132 ANLFMEDLETRALQTASHKPKL---WLRYVDDTFVIWTHGREQLDGFLDHLNSIHQKIKFTMKTEDNNQLPFLDVLVKKRQDES 212          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI000738448A (uncharacterized protein LOC107046828 n=1 Tax=Diachasma alloeum TaxID=454923 RepID=UPI000738448A)

HSP 1 Score: 76.3 bits (186), Expect = 2.570e-14
Identity = 36/85 (42.35%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSF 258
            ++IFME +E   +  ++    +   W R+ DDT++IW   +   ++FLE LN  HP IK+    E+NG LPFLDVLV RN+DG+ 
Sbjct:  115 ANIFMEHFENDTLKSVAQKPAV---WFRYVDDTFVIWPHGRTGLNQFLEFLNAQHPSIKFTMEIEQNGCLPFLDVLVYRNKDGTL 196          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI00193D6260 (uncharacterized protein LOC105202200 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D6260)

HSP 1 Score: 76.6 bits (187), Expect = 2.750e-14
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSF 258
            ++IFME  E+K+   L +  +  + W R+ DDT++IW   +E F  FL  LN  HP IK+    E+  Q+PFLDVLV RN DG+ 
Sbjct:  155 ANIFMEHLEDKI---LKNAPLKPSTWFRYVDDTFVIWSHGKETFSPFLAFLNAQHPNIKFTMEVEQENQIPFLDVLVRRNGDGTL 236          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI001ED8AFF1 (uncharacterized protein LOC124153280 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8AFF1)

HSP 1 Score: 76.6 bits (187), Expect = 2.790e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFT 261
            ++ FMED+EE+    LS   +    + R+ DDT+++W   QE    FL+ +N +HP I+     EK+G LPFLDVL+ R EDGS +
Sbjct:   67 ANFFMEDFEERA---LSTAKIKPKYYFRYVDDTFIVWPHGQETLPAFLQHMNSLHPNIQVTMEMEKDGCLPFLDVLIRRKEDGSLS 149          
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Match: UPI00192FAC3A (uncharacterized protein LOC120310339 n=3 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192FAC3A)

HSP 1 Score: 74.7 bits (182), Expect = 3.400e-14
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    4 SDIFMEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGIHPKIKWEAVFEKNGQLPFLDVLVVRNEDGSF 258
            ++++ME +E + + K      +   WLR+ DDT++IW   +E  D FL  LN +HPKI++    E N QLPFLDVLV +  +GS 
Sbjct:   10 ANLYMEHFETQALEKSDHKPKL---WLRYVDDTFIIWPHGKEKLDNFLTHLNSLHPKIQFTMETEANNQLPFLDVLVYKKSNGSL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig972.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401QI04_SCYTO1.140e-1540.86Reverse transcriptase domain-containing protein (F... [more]
UPI0010FBB0A72.190e-1543.53uncharacterized protein LOC114944459 n=1 Tax=Nylan... [more]
UPI001ED886C91.240e-1441.86uncharacterized protein LOC124164935 n=1 Tax=Ischn... [more]
UPI0005F52B341.390e-1440.00uncharacterized protein LOC105562568 n=1 Tax=Volle... [more]
A0A6P7H742_DIAVI1.400e-1439.58uncharacterized protein LOC114347923 n=1 Tax=Diabr... [more]
A0A8K0G947_9COLE1.950e-1445.24Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI000738448A2.570e-1442.35uncharacterized protein LOC107046828 n=1 Tax=Diach... [more]
UPI00193D62602.750e-1443.53uncharacterized protein LOC105202200 n=1 Tax=Solen... [more]
UPI001ED8AFF12.790e-1441.86uncharacterized protein LOC124153280 n=2 Tax=Ischn... [more]
UPI00192FAC3A3.400e-1441.18uncharacterized protein LOC120310339 n=3 Tax=Crota... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig972contigH-akashiwo_Contig972:89113..89442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size330
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-11
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.0130892-UTR-H-akashiwo_Contig972:89112..891271681388064.0130892-UTR-H-akashiwo_Contig972:89112..89127Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig972 89113..89127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388064.0250556-CDS-H-akashiwo_Contig972:89127..894421681388064.0250556-CDS-H-akashiwo_Contig972:89127..89442Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig972 89128..89442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig972.5.1prot_H-akashiwo_Contig972.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig972 89128..89442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig972.5.1

>prot_H-akashiwo_Contig972.5.1 ID=prot_H-akashiwo_Contig972.5.1|Name=mRNA_H-akashiwo_Contig972.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
MEDYEEKVVIKLSDGTVIRADWLRFRDDTWMIWEQSQELFDEFLEKLNGI
HPKIKWEAVFEKNGQLPFLDVLVVRNEDGSFTIPRSTGNPHTLTGIPIGL
PTIL*
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mRNA from alignment at H-akashiwo_Contig972:89113..89442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig972.5.1 ID=mRNA_H-akashiwo_Contig972.5.1|Name=mRNA_H-akashiwo_Contig972.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=330bp|location=Sequence derived from alignment at H-akashiwo_Contig972:89113..89442+ (Heterosigma akashiwo CCMP452)
TTTTCTGACATTTTCATGGAGGATTATGAGGAGAAGGTCGTCATTAAACT GTCTGATGGGACAGTGATCAGGGCTGACTGGCTCAGGTTCCGTGATGACA CCTGGATGATCTGGGAGCAATCTCAGGAGCTTTTTGACGAGTTCTTGGAG AAGCTCAATGGCATACACCCGAAGATCAAGTGGGAGGCAGTGTTTGAGAA AAATGGGCAGTTGCCTTTTCTGGACGTGTTGGTGGTGAGAAATGAGGATG GCTCTTTTACTATACCACGGTCTACCGGAAACCCACACACTCTGACAGGT ATCCCCATTGGACTTCCAACCATCCTGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig972:89113..89442+

>mRNA_H-akashiwo_Contig972.5.1 ID=mRNA_H-akashiwo_Contig972.5.1|Name=mRNA_H-akashiwo_Contig972.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig972:89113..89442+ (Heterosigma akashiwo CCMP452)
ATGGAGGATTATGAGGAGAAGGTCGTCATTAAACTGTCTGATGGGACAGT
GATCAGGGCTGACTGGCTCAGGTTCCGTGATGACACCTGGATGATCTGGG
AGCAATCTCAGGAGCTTTTTGACGAGTTCTTGGAGAAGCTCAATGGCATA
CACCCGAAGATCAAGTGGGAGGCAGTGTTTGAGAAAAATGGGCAGTTGCC
TTTTCTGGACGTGTTGGTGGTGAGAAATGAGGATGGCTCTTTTACTATAC
CACGGTCTACCGGAAACCCACACACTCTGACAGGTATCCCCATTGGACTT
CCAACCATCCTGTGA
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