mRNA_H-akashiwo_Contig972.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig972.3.1
Unique NamemRNA_H-akashiwo_Contig972.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig972.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig972contigH-akashiwo_Contig972:52814..53652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size374
Hectar predicted targeting categoryother localisation
Exons4
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388063.8787327-CDS-H-akashiwo_Contig972:52813..529321681388063.8787327-CDS-H-akashiwo_Contig972:52813..52932Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig972 52814..52932 +
1681388063.8936958-CDS-H-akashiwo_Contig972:53045..531661681388063.8936958-CDS-H-akashiwo_Contig972:53045..53166Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig972 53046..53166 +
1681388063.9050744-CDS-H-akashiwo_Contig972:53315..533561681388063.9050744-CDS-H-akashiwo_Contig972:53315..53356Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig972 53316..53356 +
1681388063.9141514-CDS-H-akashiwo_Contig972:53561..536521681388063.9141514-CDS-H-akashiwo_Contig972:53561..53652Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig972 53562..53652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig972.3.1prot_H-akashiwo_Contig972.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig972 52814..53652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig972.3.1

>prot_H-akashiwo_Contig972.3.1 ID=prot_H-akashiwo_Contig972.3.1|Name=mRNA_H-akashiwo_Contig972.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=124bp
GNRRPWPFKADSSDPRMASFSLVDTGKFSVLEAQQLTDQTNVVANVSSVC
TGNRKVPLDDFVAVASLGAEVELDKGSMEKLAAASPSDEQYEFSNHDMDE
DSGPKLSEAESRGALYARLIACLQ
back to top

mRNA from alignment at H-akashiwo_Contig972:52814..53652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig972.3.1 ID=mRNA_H-akashiwo_Contig972.3.1|Name=mRNA_H-akashiwo_Contig972.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=839bp|location=Sequence derived from alignment at H-akashiwo_Contig972:52814..53652+ (Heterosigma akashiwo CCMP452)
GGAAACAGGAGGCCTTGGCCATTCAAAGCTGACAGCTCAGACCCAAGAAT
GGCATCTTTCAGCCTGGTTGACACTGGAAAGTTCTCAGTGCTGGAAGCTC
AGCAACTCACTGATCAAACGTACGCTGCGTATGCTGATTTAAATCGAACT
GTTGAGCCAGACACAGAAAAGTCAACTCGGTCTTTTTTGCCAAAAGTAAA
ACTGCCCATCGGTTCTCCCTTGTGTCGTTCAGGAATGTCGTCGCTAATGT
ATCATCAGTTTGCACTGGGAATCGTAAGGTGCCGCTCGATGACTTTGTAG
CAGTGGCAAGCCTCGGCGCAGAGGTTGAGCTTGATAAAGGCTCAATGGAG
AAGGTACAGGAAGGCACACAGATTTACACTCACCCAAGCAAGCAAAGTGC
AATGATATGATACCTTGGCCACCAAACCCAATATGTAGCCAGTATATATG
CTGGGATATTATGTCATTATCTTTTTCTCCCTCTTTTTGTCTGCCTGTGC
AGCTGGCTGCTGCCTCTCCATCTGATGAGCAGTATGAATTCAGGTAGTAT
AATATATGTACTAGTTACGGAGTAAGCAGCAACACTCACTATACAGTACC
TATGAATTGCACCACCTACCTGCATTCTTTTGATGTGTTTTTGAAAAACA
AAGAGACATACATATTTGTGTGCCTGGAGGGTCATGGAGTACTGTGAGGG
GAGGTCTGATGTTTTCACCTCCTTGTCATTTGGTGCTGTTTGGCTCAGTA
ATCATGATATGGACGAAGACAGTGGCCCAAAACTCAGCGAAGCTGAATCC
AGAGGAGCTCTCTACGCACGCCTGATCGCCTGCCTTCAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig972:52814..53652+

>mRNA_H-akashiwo_Contig972.3.1 ID=mRNA_H-akashiwo_Contig972.3.1|Name=mRNA_H-akashiwo_Contig972.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=372bp|location=Sequence derived from alignment at H-akashiwo_Contig972:52814..53652+ (Heterosigma akashiwo CCMP452)
GGAAACAGGAGGCCTTGGCCATTCAAAGCTGACAGCTCAGACCCAAGAAT
GGCATCTTTCAGCCTGGTTGACACTGGAAAGTTCTCAGTGCTGGAAGCTC
AGCAACTCACTGATCAAACGAATGTCGTCGCTAATGTATCATCAGTTTGC
ACTGGGAATCGTAAGGTGCCGCTCGATGACTTTGTAGCAGTGGCAAGCCT
CGGCGCAGAGGTTGAGCTTGATAAAGGCTCAATGGAGAAGCTGGCTGCTG
CCTCTCCATCTGATGAGCAGTATGAATTCAGTAATCATGATATGGACGAA
GACAGTGGCCCAAAACTCAGCGAAGCTGAATCCAGAGGAGCTCTCTACGC
ACGCCTGATCGCCTGCCTTCAG
back to top