mRNA_H-akashiwo_Contig97.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig97.6.1
Unique NamemRNA_H-akashiwo_Contig97.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig97.6.1 vs. uniprot
Match: A0A7S4D919_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D919_HETAK)

HSP 1 Score: 213 bits (541), Expect = 1.050e-68
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 2 
Query:  104 MYVLPEEATTFPPPVLPPGPEDIKGQEGDRTASSCQWRWPRLGAPSSSHSRTSPPLPALPTSTPPLHHKLLAAHIIVALPPEHAARPRRRGGEVAPRPGQVWA 412
            MYVLPEEATTFPPPVLPPGPEDIKGQEGDRTASSCQWRWPRLGAPSSSHSRTSPPLPALPTSTPPLHHKLLAAHIIVALPPEHAARPRRRGGEVAPRP QVWA
Sbjct:    1 MYVLPEEATTFPPPVLPPGPEDIKGQEGDRTASSCQWRWPRLGAPSSSHSRTSPPLPALPTSTPPLHHKLLAAHIIVALPPEHAARPRRRGGEVAPRPDQVWA 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig97.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D919_HETAK1.050e-6899.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig97contigH-akashiwo_Contig97:779768..780299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size532
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388062.7556217-UTR-H-akashiwo_Contig97:779767..7798701681388062.7556217-UTR-H-akashiwo_Contig97:779767..779870Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig97 779768..779870 +
1681388062.7739587-UTR-H-akashiwo_Contig97:780182..7802991681388062.7739587-UTR-H-akashiwo_Contig97:780182..780299Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig97 780183..780299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388062.7651155-CDS-H-akashiwo_Contig97:779870..7801821681388062.7651155-CDS-H-akashiwo_Contig97:779870..780182Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig97 779871..780182 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig97.6.1prot_H-akashiwo_Contig97.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig97 779871..780182 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig97.6.1

>prot_H-akashiwo_Contig97.6.1 ID=prot_H-akashiwo_Contig97.6.1|Name=mRNA_H-akashiwo_Contig97.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
MYVLPEEATTFPPPVLPPGPEDIKGQEGDRTASSCQWRWPRLGAPSSSHS
RTSPPLPALPTSTPPLHHKLLAAHIIVALPPEHAARPRRRGGEVAPRPGQ
VWA*
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mRNA from alignment at H-akashiwo_Contig97:779768..780299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig97.6.1 ID=mRNA_H-akashiwo_Contig97.6.1|Name=mRNA_H-akashiwo_Contig97.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=532bp|location=Sequence derived from alignment at H-akashiwo_Contig97:779768..780299+ (Heterosigma akashiwo CCMP452)
TCCGTGAGGCATTAGACTGGGTCAACGTCTTCCTTTTGGAATATCCTATG
CCCTGATGATGGTCCTATTAATCAATAATACATAATACTACAGCTGCTAC
TATATGTACGTACTACCAGAGGAGGCAACAACATTTCCACCACCAGTGCT
GCCGCCAGGCCCGGAGGATATTAAAGGCCAAGAGGGCGACCGCACCGCCT
CTTCTTGCCAGTGGCGGTGGCCTCGCCTTGGTGCTCCGTCTTCTTCACAC
TCGCGCACCTCGCCGCCGCTGCCAGCCTTGCCTACTTCGACTCCGCCTCT
GCACCACAAACTCCTGGCTGCACACATCATCGTCGCACTCCCGCCCGAAC
ACGCCGCCCGCCCGCGGCGGCGCGGCGGCGAAGTGGCGCCgCGGCCAGGT
CAGGTGTGGGCGTAGGCCTCCAGGAAGAACTTCAGGTCGCGCAGCAGCTG
CCCCGGGTTCTCCTCGGACACCAGGTGGCCGCAGTGCGGCGCGGCCACGA
AGTCCGTGAGGCCGTTGGCCAGCCACGCCCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig97:779768..780299+

>mRNA_H-akashiwo_Contig97.6.1 ID=mRNA_H-akashiwo_Contig97.6.1|Name=mRNA_H-akashiwo_Contig97.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig97:779768..780299+ (Heterosigma akashiwo CCMP452)
ATGTACGTACTACCAGAGGAGGCAACAACATTTCCACCACCAGTGCTGCC
GCCAGGCCCGGAGGATATTAAAGGCCAAGAGGGCGACCGCACCGCCTCTT
CTTGCCAGTGGCGGTGGCCTCGCCTTGGTGCTCCGTCTTCTTCACACTCG
CGCACCTCGCCGCCGCTGCCAGCCTTGCCTACTTCGACTCCGCCTCTGCA
CCACAAACTCCTGGCTGCACACATCATCGTCGCACTCCCGCCCGAACACG
CCGCCCGCCCGCGGCGGCGCGGCGGCGAAGTGGCGCCgCGGCCAGGTCAG
GTGTGGGCGTAG
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