mRNA_H-akashiwo_Contig96.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig96.4.1
Unique NamemRNA_H-akashiwo_Contig96.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A7S3XK24_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK24_HETAK)

HSP 1 Score: 364 bits (934), Expect = 9.820e-127
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPVERPAPGEKKLIID 543
            VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPVERPAPGEKKLIID
Sbjct:   38 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPVERPAPGEKKLIID 218          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A7S3UW02_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW02_HETAK)

HSP 1 Score: 294 bits (752), Expect = 5.610e-99
Identity = 143/181 (79.01%), Postives = 161/181 (88.95%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPVERPAPGEKKLIID 543
            VNLITQDGDSFTV+R+ V ISELI+TM D+SL E DDPQEIPLPNLKS VLVKVIEFCK+YHK+KMA IP PIKYGLQVADVVQDWYG++VD LV+ KEFEMLFDL+LAANYLDIK LLDL  AT+GLL+MNKTPDQIRE  G+DEEFSPE+++QL++E KWSTEP V RP PGEKKLI D
Sbjct:   40 VNLITQDGDSFTVSRDIVMISELIKTMIDESLGEDDDPQEIPLPNLKSNVLVKVIEFCKYYHKDKMATIPRPIKYGLQVADVVQDWYGEYVDALVNNKEFEMLFDLVLAANYLDIKSLLDLASATIGLLIMNKTPDQIRETLGLDEEFSPEMHEQLMQEMKWSTEPAVPRPGPGEKKLIFD 220          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A6V3BV71_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BV71_HETAK)

HSP 1 Score: 183 bits (464), Expect = 1.410e-55
Identity = 87/173 (50.29%), Postives = 122/173 (70.52%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPVERPAP 519
            + L+T DG+SF +++   ++SEL++ M +D+ +     +EI LPNLK  VL KVIEFC    +E MA IP+PIK+G QV DVVQ  +G +VD +V+ +++ +L  L+LAA YLD++PL DLTCA +GLL+MNKTPD+IRE FG++  FSPE+   L + NKWS EPP     P
Sbjct:   20 ITLVTSDGESFRISKAVARVSELVKNMMEDADETMQTQEEIRLPNLKGKVLAKVIEFCNLQVEEPMAEIPKPIKFGKQVRDVVQPAFGAYVDGMVAARDWLLLLQLVLAAQYLDVRPLADLTCAALGLLIMNKTPDEIRELFGVESPFSPEIEQLLRENNKWSVEPPPTASTP 192          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A836CJ49_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ49_9STRA)

HSP 1 Score: 177 bits (449), Expect = 1.610e-53
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPV 504
            V L+   GD+FTV R  + +S++IR M +D  D      EIPLP ++ PVL KV+++C HY  E M  IP PIKYG  VAD VQ WY +FVD L    + E LF+LIL+ NYLD+KPLLDLT A  GL++MNKTPD+IR   GI++ F+PE+  QL  E +WSTEPPV
Sbjct:   15 VTLVAMGGDTFTVDRNVISLSQVIRVMLED--DGECVATEIPLPTVRGPVLAKVVDYCVHYQTEPMTEIPRPIKYGRTVADHVQPWYAEFVDAL----DKETLFELILSCNYLDVKPLLDLTSAVAGLMLMNKTPDEIRATLGIEQPFAPEVERQLRDEIRWSTEPPV 176          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A835Z9K0_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9K0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 6.980e-52
Identity = 87/165 (52.73%), Postives = 120/165 (72.73%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTE 495
            VNL++Q+GDSF V+ +  ++SEL++TM DD  DE  + QEIPLPN+KS VL K+IEFC+HY ++ M  I +P+K    + +VVQDW+  FV     + E E+LF+LILAANY+DIKPLLDLTCATV  ++  KTP++IR+ F I  +F+PE   Q+ +ENKW  E
Sbjct:   28 VNLVSQEGDSFDVSIKVAKMSELVKTMIDDDADEDAEAQEIPLPNVKSSVLTKIIEFCRHYIEDPMNEIEKPLK-SANMQEVVQDWFANFV-----QVEQELLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEE 186          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: B7FNR9_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNR9_PHATC)

HSP 1 Score: 168 bits (426), Expect = 3.720e-50
Identity = 89/165 (53.94%), Postives = 117/165 (70.91%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTE 495
            VNLI++DGDSF+V     ++SEL++ M D+  ++  D  EIPLPN+KS VL KVIEFC+H+ +E M  I +P+K  + +ADVVQ WY  FVD      E  +LF+LILAANY+DIKPLLDLTCATV  ++  KTP+ IR+ FGI  +FSPE   Q+ +ENKW  E
Sbjct:   10 VNLISKDGDSFSVPLAVAKMSELVKGMIDEDAEDEGDKIEIPLPNVKSQVLNKVIEFCEHHLQEPMTEIEKPLKSQV-MADVVQKWYADFVD-----VEQVLLFELILAANYMDIKPLLDLTCATVAGMIKGKTPEDIRQTFGIQNDFSPEEEAQVREENKWCEE 168          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A7S2SQM9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQM9_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.120e-49
Identity = 87/165 (52.73%), Postives = 119/165 (72.12%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTE 495
            V L++Q+GD+F V  +  ++SEL++TM  D  DE D+ QEIPLPN+KS VL KVIEFC+HY ++ M  I +P+K    +++VVQ+WY  FVD      E E+LF+LILAANY+DIKPLLDLTCATV  ++  KTP++IR+ F I  +F+PE   Q+ +ENKW  E
Sbjct:   24 VQLVSQEGDNFQVEAKVAKMSELVKTMLPDE-DEGDEVQEIPLPNVKSSVLGKVIEFCRHYKEDPMTEIEKPLKSST-MSEVVQEWYATFVD-----VEQEVLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEE 181          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A836CN28_9STRA (Skp1 family, dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN28_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.250e-49
Identity = 84/165 (50.91%), Postives = 121/165 (73.33%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTE 495
            V+L++Q+GDSF V+ +  ++SEL++TM D+ L+E  + QEIPLPN+KS VL KVIEFC+HY ++ M  I +P+K    + +VVQ+W+  +V     + E E+LF+LILAANY+DIKPLLDLTCATV  ++  KTP++IR+ F I  +F+PE   Q+ +ENKW  E
Sbjct:   23 VHLVSQEGDSFDVSVKVAKMSELVKTMLDEELEEDAEAQEIPLPNVKSSVLTKVIEFCRHYVEDPMNEIEKPLK-SANMQEVVQNWFATYV-----QVEQEVLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKTFNIVNDFTPEEEAQVREENKWCEE 181          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A6V1AYU4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6V1AYU4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.020e-49
Identity = 85/165 (51.52%), Postives = 116/165 (70.30%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTE 495
            +NL++++GDSF V  +  Q+SEL+++M +D  D  D+  EIPLPN+K+ VL KVIEFC+H+ +E M  I +P+K    +ADVVQ WY  +VD      E  +LF+LILAANY+DIKPLLDLTCATV  ++  KTP++IR  F I  +FSPE   Q+ +ENKW  E
Sbjct:   10 INLVSKEGDSFKVPVDVAQMSELVKSMMEDDNDTEDEVTEIPLPNVKATVLQKVIEFCQHHKEEPMTEIEKPLK-SQNMADVVQVWYANYVD-----VEQVVLFELILAANYMDIKPLLDLTCATVASMIKGKTPEEIRTTFNISNDFSPEEEAQVREENKWCEE 168          
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Match: A0A6U4FS63_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FS63_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.660e-48
Identity = 85/165 (51.52%), Postives = 114/165 (69.09%), Query Frame = 1
Query:    1 VNLITQDGDSFTVAREKVQISELIRTMFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYGLQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATVGLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTE 495
            + L++ +GD F V  +  ++SEL++TM DD  DE D+ QEIPLPN+KS  L  VIEFC+HY  E M  I +P+K   ++ +VVQDWY  FV+      + E LFDLILAANY+DIKPLLDLTCATV  ++  KTP++IR+ F I  +F+PE   Q+ +ENKW  E
Sbjct:   21 IGLLSSEGDRFEVPMQVAKMSELVKTMIDDDADE-DEQQEIPLPNVKSSTLGNVIEFCRHYQSEAMDEIEKPLK-SAEMREVVQDWYADFVN-----VDQEALFDLILAANYMDIKPLLDLTCATVASMIKGKTPEEIRKCFNIVNDFTPEEEAQVREENKWCEE 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig96.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XK24_HETAK9.820e-127100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UW02_HETAK5.610e-9979.01Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V3BV71_HETAK1.410e-5550.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CJ49_9STRA1.610e-5353.57Skp1 family, dimerization domain-containing protei... [more]
A0A835Z9K0_9STRA6.980e-5252.73Skp1 family, dimerization domain-containing protei... [more]
B7FNR9_PHATC3.720e-5053.94Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2SQM9_9STRA1.120e-4952.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CN28_9STRA2.250e-4950.91Skp1 family, dimerization domain-containing protei... [more]
A0A6V1AYU4_9STRA3.020e-4951.52Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6U4FS63_9STRA1.660e-4851.52Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig96contigH-akashiwo_Contig96:31507..32064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2Z2
PFAMsSkp1,Skp1_POZ
Model size558
Max annot lvl2759|Eukaryota
KEGG koko:K03094
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.35e-42
EggNOG OGsCOG5201@1|root,KOG1724@2759|Eukaryota
Descriptionmodification-dependent protein catabolic process
Cds size468
COG categoryO
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.336163-UTR-H-akashiwo_Contig96:31506..315841681388059.336163-UTR-H-akashiwo_Contig96:31506..31584Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 31507..31584 +
1681388059.355216-UTR-H-akashiwo_Contig96:32052..320641681388059.355216-UTR-H-akashiwo_Contig96:32052..32064Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig96 32053..32064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388059.3465195-CDS-H-akashiwo_Contig96:31584..320521681388059.3465195-CDS-H-akashiwo_Contig96:31584..32052Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig96 31585..32052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig96.4.1prot_H-akashiwo_Contig96.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig96 31585..32052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig96.4.1

>prot_H-akashiwo_Contig96.4.1 ID=prot_H-akashiwo_Contig96.4.1|Name=mRNA_H-akashiwo_Contig96.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=156bp
MFDDSLDESDDPQEIPLPNLKSPVLVKVIEFCKHYHKEKMARIPEPIKYG
LQVADVVQDWYGQFVDDLVSKKEFEMLFDLILAANYLDIKPLLDLTCATV
GLLMMNKTPDQIREAFGIDEEFSPELYDQLLKENKWSTEPPVERPAPGEK
KLIID*
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mRNA from alignment at H-akashiwo_Contig96:31507..32064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig96.4.1 ID=mRNA_H-akashiwo_Contig96.4.1|Name=mRNA_H-akashiwo_Contig96.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=558bp|location=Sequence derived from alignment at H-akashiwo_Contig96:31507..32064+ (Heterosigma akashiwo CCMP452)
GTGAACCTAATCACACAGGACGGCGATAGTTTTACGGTAGCCCGTGAGAA AGTTCAAATCTCTGAGTTGATCAGAACGATGTTTGATGACAGTCTCGATG AAAGTGATGACCCACAGGAAATCCCGTTGCCGAACCTTAAAAGCCCGGTA CTCGTGAAAGTGATAGAATTCTGCAAGCACTATCACAAGGAAAAAATGGC AAGAATCCCCGAACCCATAAAATACGGCCTGCAGGTGGCCGACGTGGTAC AGGACTGGTATGGACAGTTTGTTGACGACCTTGTGAGCAAGAAGGAGTTT GAGATGCTTTTTGACCTTATTCTGGCTGCCAACTACTTGGACATCAAGCC GTTGCTGGACTTGACATGTGCAACAGTTGGACTCCTCATGATGAACAAGA CTCCAGATCAGATCCGGGAGGCATTTGGTATCGATGAAGAATTCTCCCCT GAGCTTTATGATCAACTTCTAAAGGAGAACAAATGGAGCACTGAGCCGCC GGTTGAACGCCCAGCGCCTGGGGAAAAGAAGCTGATCATTGACTGAACAA CTATAGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig96:31507..32064+

>mRNA_H-akashiwo_Contig96.4.1 ID=mRNA_H-akashiwo_Contig96.4.1|Name=mRNA_H-akashiwo_Contig96.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=468bp|location=Sequence derived from alignment at H-akashiwo_Contig96:31507..32064+ (Heterosigma akashiwo CCMP452)
ATGTTTGATGACAGTCTCGATGAAAGTGATGACCCACAGGAAATCCCGTT
GCCGAACCTTAAAAGCCCGGTACTCGTGAAAGTGATAGAATTCTGCAAGC
ACTATCACAAGGAAAAAATGGCAAGAATCCCCGAACCCATAAAATACGGC
CTGCAGGTGGCCGACGTGGTACAGGACTGGTATGGACAGTTTGTTGACGA
CCTTGTGAGCAAGAAGGAGTTTGAGATGCTTTTTGACCTTATTCTGGCTG
CCAACTACTTGGACATCAAGCCGTTGCTGGACTTGACATGTGCAACAGTT
GGACTCCTCATGATGAACAAGACTCCAGATCAGATCCGGGAGGCATTTGG
TATCGATGAAGAATTCTCCCCTGAGCTTTATGATCAACTTCTAAAGGAGA
ACAAATGGAGCACTGAGCCGCCGGTTGAACGCCCAGCGCCTGGGGAAAAG
AAGCTGATCATTGACTGA
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