mRNA_H-akashiwo_Contig957.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig957.1.1
Unique NamemRNA_H-akashiwo_Contig957.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig957.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig957contigH-akashiwo_Contig957:17161..17514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size354
Hectar predicted targeting categoryother localisation
Exons1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388058.0327256-CDS-H-akashiwo_Contig957:17160..175141681388058.0327256-CDS-H-akashiwo_Contig957:17160..17514Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig957 17161..17514 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig957.1.1prot_H-akashiwo_Contig957.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig957 17161..17514 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig957.1.1

>prot_H-akashiwo_Contig957.1.1 ID=prot_H-akashiwo_Contig957.1.1|Name=mRNA_H-akashiwo_Contig957.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=118bp
VRLLVDAGADPEARTKDGNTPLHIAAALEGHEVAVKNLIEVGADLAAQNS
DGDTPLHKAARQGCINLVQNLVAAGAPIDAQQANGWTALHWASKLGHEDV
VKVLVDAGADIESQQKQG
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mRNA from alignment at H-akashiwo_Contig957:17161..17514-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig957.1.1 ID=mRNA_H-akashiwo_Contig957.1.1|Name=mRNA_H-akashiwo_Contig957.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig957:17161..17514- (Heterosigma akashiwo CCMP452)
GTGCGGTTGCTGGTCGATGCTGGTGCGGATCCTGAGGCCCGAACTAAGGA
TGGCAATACTCCTTTGCATATTGCAGCAGCACTTGAGGGCCACGAGGTTG
CAGTGAAGAATCTCATAGAAGTCGGAGCGGATCTTGCAGCACAGAATAGT
GACGGCGACACCCCTCTGCACAAGGCCGCCAGGCAAGGCTGTATCAATTT
GGTGCAAAATCTGGTGGCAGCTGGGGCGCCTATTGACGCTCAACAAGCAA
ATGGGTGGACTGCACTCCATTGGGCAAGCAAATTAGGGCATGAGGATGTA
GTGAAAGTGCTAGTGGATGCTGGAGCAGATATCGAGTCCCAGCAAAAGCA
GGGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig957:17161..17514-

>mRNA_H-akashiwo_Contig957.1.1 ID=mRNA_H-akashiwo_Contig957.1.1|Name=mRNA_H-akashiwo_Contig957.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=354bp|location=Sequence derived from alignment at H-akashiwo_Contig957:17161..17514- (Heterosigma akashiwo CCMP452)
GTGCGGTTGCTGGTCGATGCTGGTGCGGATCCTGAGGCCCGAACTAAGGA
TGGCAATACTCCTTTGCATATTGCAGCAGCACTTGAGGGCCACGAGGTTG
CAGTGAAGAATCTCATAGAAGTCGGAGCGGATCTTGCAGCACAGAATAGT
GACGGCGACACCCCTCTGCACAAGGCCGCCAGGCAAGGCTGTATCAATTT
GGTGCAAAATCTGGTGGCAGCTGGGGCGCCTATTGACGCTCAACAAGCAA
ATGGGTGGACTGCACTCCATTGGGCAAGCAAATTAGGGCATGAGGATGTA
GTGAAAGTGCTAGTGGATGCTGGAGCAGATATCGAGTCCCAGCAAAAGCA
GGGA
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