mRNA_H-akashiwo_Contig952.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig952.9.1
Unique NamemRNA_H-akashiwo_Contig952.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig952.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig952contigH-akashiwo_Contig952:337708..339660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size637
Hectar predicted targeting categoryother localisation
Exons2
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388056.837248-UTR-H-akashiwo_Contig952:337707..3377261681388056.837248-UTR-H-akashiwo_Contig952:337707..337726Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig952 337708..337726 +
1681388056.8685474-UTR-H-akashiwo_Contig952:339375..3396601681388056.8685474-UTR-H-akashiwo_Contig952:339375..339660Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig952 339376..339660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388056.8471074-CDS-H-akashiwo_Contig952:337726..3378851681388056.8471074-CDS-H-akashiwo_Contig952:337726..337885Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 337727..337885 +
1681388056.856703-CDS-H-akashiwo_Contig952:339201..3393751681388056.856703-CDS-H-akashiwo_Contig952:339201..339375Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig952 339202..339375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig952.9.1prot_H-akashiwo_Contig952.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig952 337727..339375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig952.9.1

>prot_H-akashiwo_Contig952.9.1 ID=prot_H-akashiwo_Contig952.9.1|Name=mRNA_H-akashiwo_Contig952.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=111bp
MMTWMTTGRTRRRRRRKSQRLPMVRRTGLPLTRRPRRPLQKRQRKTRILL
IMKKKPMHREGPEGNVLDLQLSFLAFCRRSRCIEKKGPEGNVLDLQLSFL
ANVLEKMPVQ*
back to top

mRNA from alignment at H-akashiwo_Contig952:337708..339660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig952.9.1 ID=mRNA_H-akashiwo_Contig952.9.1|Name=mRNA_H-akashiwo_Contig952.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1953bp|location=Sequence derived from alignment at H-akashiwo_Contig952:337708..339660+ (Heterosigma akashiwo CCMP452)
GCTGGCTCCAAGAGACTGGATGATGACATGGATGACTACTGGAAGAACAA
GGAGGAGGAGAAGAAGGAAGAGCCAGCGGCTGCCGATGGTGAGACGAACG
GGGCTGCCGCTGACGAGGAGACCGAGGAGGCCCCTGCAGAAGAGGCAGAG
GAAAACGAGGATACTGCTGATAATGAAGGTAAGGACCTACCTACTTAATA
GCTGTGCATGAGACCATCGTAGGCAGTACAATTGTTGCATCTTGGTTTCT
GCACACACCGCATATAAAAGATATGCATGATCTGTACACGGATGTAGAAT
ATGCCGTCCTTCAATCTTCACTCTTTACTGTGGGTGGTCAATTAGAACAT
AAACTCATAAAAAAGTTTTTATGGTGAATGAGGACTGGGGTGCAACTGTC
GAAATCAGCAATCATATATACATATTTTTGGGAAACCATTTGCAGAGTGC
TTCAGGGCTTTCAACAATTTTTTTCAAATGGAGGAGCTGCGCTCCTCCAT
TTCTCTCCTATTTTTGCTCAAATGGAGGAGCACCCACCAAGATGGAGGAG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGACCGCTTTGCA
GGTCCAGGCAATAGAAGGCCGACTGCAGACCCATGTATAGTCTGAATGTA
TAGTCTGTCTGGTGGTATTTGTCGATCAGTCTCCTTTTGAACGTCGTCGT
CAATGAATATACCTAGCTTTTCGGGGCTGCCGTCGTCGTGTATAATATAA
TATCTAAGGTATCGTTACGTCGTCATCTTCGTCTTCGTCGTCGTCGTCGT
CGTCGTCCTTGGTAAAGATTTTCAAATTTCCATCAAAATATTATTATTTG
AAACATAAAAATTACAAGAAAAGTGGTGATTTTTTCAGGAAATCAATTTT
TTGAGCGTATAAAACATGAAACAAATCCAATTTTAGAAACAATTTATTTC
CTCATCGAAATTAGAAAATAAAAAAGTATAACCGGAACTTTGCACAACTT
TTCTCTTCTACATTCTCTCCTCATCTTCTACTTTTGATACCCTCCCCAAG
ATGGAGATGGCAGCGCTCCATTTCCAAAATTTCCAAAAACACGCCGGGCG
CTGGTCCCTTCAAAAATGCGGCGCGCGCTTGTCGCAGTCTTGTTGAAAGC
CCTGGTGCTTAATCGAGCATATCTCTGGGTTTTCCGCTTGTATTTTGTGT
GTATACGTATATAACTGAACTTAGAAATGTTCTCTCTGATGATGGAAACG
GCTTTTCTGTTAAATCCAACACCTCACAAAATAATTCCACTTGTGTAAAG
TTTTTCTATTGGCAAAAAAACATCGTGGGCGTGAGCCAGTGGCTGTTGTT
TCGGCTTGGCTAATCCAACATAAACGTCTTGGCAATTTATTATCTGCATC
CAATATTTTATGCACGATGCTTACGCACATGTAAACAACTTTCTTTTTTT
CAAATCCTGATAATATTTCTCTTTTGGTGATAATCCTGTTGCAGAAGAAG
CCGATGCATAGAGAAGGACCAGAGGGAAATGTTTTGGATCTCCAACTATC
CTTTCTAGCCTTTTGCAGAAGAAGCCGATGCATAGAGAAGAAGGGACCAG
AAGGAAATGTGTTGGATCTCCAACTATCCTTCCTAGCGAATGTGTTGGAA
AAAATGCCAGTTCAGTGATCTCAGCTGGAAAATTAGAATTGTATAATATT
TTCTGTCATATCCTTCCTATGTAGCGAATTTGTTCAAAAAATTGCCAGTT
CAGTGTTCTCAGCAGGAAAAATTAGAATTATATAATATTTTCTGGGATCT
TTTAGCAATAGCACTCAGCCCAGAAACTGTGTGACTACTATGGCAATGGA
AACAGTGATGCGCTGGTGGTTATTAGGTGTTGCAGAGAGTATACTACAAC
CAACTTTATTGCGTTTGCTTGTTGAAAAGTAAGATGTTGTTGTTTTGCAA
AGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig952:337708..339660+

>mRNA_H-akashiwo_Contig952.9.1 ID=mRNA_H-akashiwo_Contig952.9.1|Name=mRNA_H-akashiwo_Contig952.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=333bp|location=Sequence derived from alignment at H-akashiwo_Contig952:337708..339660+ (Heterosigma akashiwo CCMP452)
ATGATGACATGGATGACTACTGGAAGAACAAGGAGGAGGAGAAGAAGGAA
GAGCCAGCGGCTGCCGATGGTGAGACGAACGGGGCTGCCGCTGACGAGGA
GACCGAGGAGGCCCCTGCAGAAGAGGCAGAGGAAAACGAGGATACTGCTG
ATAATGAAGAAGAAGCCGATGCATAGAGAAGGACCAGAGGGAAATGTTTT
GGATCTCCAACTATCCTTTCTAGCCTTTTGCAGAAGAAGCCGATGCATAG
AGAAGAAGGGACCAGAAGGAAATGTGTTGGATCTCCAACTATCCTTCCTA
GCGAATGTGTTGGAAAAAATGCCAGTTCAGTGA
back to top