mRNA_H-akashiwo_Contig95.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig95.6.1
Unique NamemRNA_H-akashiwo_Contig95.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S3XKX0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKX0_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.240e-18
Identity = 43/63 (68.25%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVFGA 189
            YGFL QHAALTILFEQSLQAVNPRLALPYWDYV+DF+    +G   +   N E LFTA  FG+
Sbjct:  235 YGFLQQHAALTILFEQSLQAVNPRLALPYWDYVKDFQQFTDAGQGYTGFNNGE-LFTAAFFGS 296
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S4DDY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDY2_HETAK)

HSP 1 Score: 86.7 bits (213), Expect = 1.910e-18
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVFGA 189
            +GFL QH+ALTILFEQS+QAVNPRLALPYWDYV+D E   Q+G   +   N E LFTA VFGA
Sbjct:  150 FGFLQQHSALTILFEQSMQAVNPRLALPYWDYVKDMELFTQAGEGFAGFNNGE-LFTAAVFGA 211
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S3XTZ6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTZ6_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 5.110e-18
Identity = 42/63 (66.67%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVFGA 189
            YGFLSQH+ALT+LFEQSLQAVNP LALPYWDYV+D +    +GA      N   LFTAD FGA
Sbjct:   91 YGFLSQHSALTLLFEQSLQAVNPALALPYWDYVKDMQAFLDAGAGFMGFNNGP-LFTADYFGA 152
[Close]
BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A6V1V8T3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V8T3_HETAK)

HSP 1 Score: 75.1 bits (183), Expect = 2.670e-14
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVFGA 189
            YG  +QHAA+TIL EQS+Q VNP+L++PYWDYV+DFE+   +G       N E LF+++ FGA
Sbjct:  258 YGVFAQHAAITILLEQSIQEVNPKLSMPYWDYVQDFEEFQAAGQGFMGFVNGE-LFSSEYFGA 319
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S3Y470_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y470_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 2.310e-13
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFE-DLYQSG--APLSALKNKEGLFTADVFGA 189
            YGFL QHAA+T+ FEQSLQAVNPR+AL YWDYVRD E  L + G  A  +   N E LF+A+ FGA
Sbjct:  278 YGFLPQHAAMTLAFEQSLQAVNPRVALHYWDYVRDVEATLAERGGEADFTDFVNSE-LFSAEWFGA 342
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S3Y6N8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6N8_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 4.750e-11
Identity = 33/63 (52.38%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    4 GFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALK-NKEGLFTADVFGA 189
            GFL  H ALT+LFEQS+QAV+P  ALPYWDY  DF+       P S  +  +  LF A  FGA
Sbjct:   77 GFLPHHMALTLLFEQSMQAVDPSTALPYWDYSIDFQRFEDLDQPSSGFELTRTELFRAKFFGA 139
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S2F5L7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5L7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-9
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVF 183
            Y FL+ H+AL ++FE+S+QAVNPR ALPYWDYV D E       P  A  +   ++ +DVF
Sbjct:  246 YAFLNAHSALNLMFERSIQAVNPRFALPYWDYVFDSETY---SLPHGADNSYMNIWNSDVF 303
[Close]
BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S3XU52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU52_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 2.240e-9
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    4 GFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVFG 186
            G L+QHAALT +FE++LQAV+P LALPYWD+  D +     G  +    + E +F+A+ FG
Sbjct:   33 GALTQHAALTAVFERALQAVDPALALPYWDFFADAQAAEARGQKVQTFVDSE-VFSAEYFG 92
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BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: F0YBG0_AURAN (Tyrosinase_Cu-bd domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBG0_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 3.830e-9
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 GFLSQHAALTILFEQSLQAVNPRLALPYWDYVRD---FEDLYQSGAPLSA 144
            GFL+ H ALT  FE+ LQAVNP++ +PYWDY RD   F+ LY    PL A
Sbjct:  209 GFLTTHVALTAFFERGLQAVNPKVTVPYWDYTRDDATFKALYGKHTPLDA 258
[Close]
BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Match: A0A7S2XX66_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX66_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 9.740e-9
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALKNKEGLFTADVFG 186
            YGFL+QH AL+  FEQS+QA++P + LPYWDY     DLY   A  +      G+FT + FG
Sbjct:  255 YGFLTQHGALSDAFEQSMQAIDPTVTLPYWDYT---VDLYLWAANDNYDYLNSGIFTPEYFG 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig95.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XKX0_HETAK1.240e-1868.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4DDY2_HETAK1.910e-1868.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XTZ6_HETAK5.110e-1866.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1V8T3_HETAK2.670e-1453.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y470_HETAK2.310e-1362.12Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y6N8_HETAK4.750e-1152.38Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2F5L7_9STRA1.090e-949.18Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XU52_HETAK2.240e-947.54Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0YBG0_AURAN3.830e-956.00Tyrosinase_Cu-bd domain-containing protein n=1 Tax... [more]
A0A7S2XX66_9STRA9.740e-948.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig95contigH-akashiwo_Contig95:105664..106153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009032530.1
Preferred nameMON1
PFAMsMon1
Model size190
Max annot lvl2759|Eukaryota
KEGG koko:K18584,ko:K20195,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,ko04530,map04138,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001786,GO:0003674,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0006605,GO:0006612,GO:0006623,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009987,GO:0010314,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0022406,GO:0031090,GO:0031410,GO:0031982,GO:0032258,GO:0032266,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0035658,GO:0042886,GO:0043085,GO:0043087,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044237,GO:0044248,GO:0044395,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048278,GO:0048731,GO:0048856,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072341,GO:0072594,GO:0072657,GO:0072665,GO:0072666,GO:0090150,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099402,GO:0140056,GO:1901981,GO:1903778
Exons2
Evalue6.96e-08
EggNOG OGsKOG0997@1|root,KOG2171@1|root,KOG0997@2759|Eukaryota,KOG2171@2759|Eukaryota
Descriptionribosomal protein import into nucleus
Cds size189
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388055.3788483-CDS-H-akashiwo_Contig95:105663..1057201681388055.3788483-CDS-H-akashiwo_Contig95:105663..105720Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 105664..105720 +
1681388055.393543-CDS-H-akashiwo_Contig95:106020..1061521681388055.393543-CDS-H-akashiwo_Contig95:106020..106152Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig95 106021..106152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig95.6.1prot_H-akashiwo_Contig95.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig95 105664..106152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig95.6.1

>prot_H-akashiwo_Contig95.6.1 ID=prot_H-akashiwo_Contig95.6.1|Name=mRNA_H-akashiwo_Contig95.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
YGFLSQHAALTILFEQSLQAVNPRLALPYWDYVRDFEDLYQSGAPLSALK
NKEGLFTADVFGA
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mRNA from alignment at H-akashiwo_Contig95:105664..106153+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig95.6.1 ID=mRNA_H-akashiwo_Contig95.6.1|Name=mRNA_H-akashiwo_Contig95.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=490bp|location=Sequence derived from alignment at H-akashiwo_Contig95:105664..106153+ (Heterosigma akashiwo CCMP452)
TATGGTTTCTTGTCGCAACATGCTGCGCTCACAATCCTTTTTGAGCAGAG
CTTGCAGGTGAGTGAACCAGTGTGTGGTTGGTATATATTATCCAAAGAAG
TTTTTGAAAATGCCTGTCAAGATACGCAACTTCATAGAAAGAAAAAAAAG
AAGAAAAAAAAACTCCTGATGACCGGTTGTACTCGTCAAATGTGACGATC
ATCGCCAGCTTTCACACGCTCTATACTGAGGTGTTCTTCGTCCAACCACA
AGCAATGATGTATGCTTTGTGCAGGCTTAAGACCAGTCAATAAACAAACA
ACAGGCAAAACATAGAATATCCACCTTTTTGCTCCACGCCGGCGCGCCGC
ACGCCAGGCGGTGAACCCGCGCCTGGCGCTGCCCTACTGGGACTACGTGA
GGGACTTTGAGGACCTCTACCAGTCCGGTGCGCCCCTATCGGCCCTCAAG
AACAAGGAGGGGCTCTTCACGGCCGATGTCTTTGGCGCCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig95:105664..106153+

>mRNA_H-akashiwo_Contig95.6.1 ID=mRNA_H-akashiwo_Contig95.6.1|Name=mRNA_H-akashiwo_Contig95.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig95:105664..106153+ (Heterosigma akashiwo CCMP452)
TATGGTTTCTTGTCGCAACATGCTGCGCTCACAATCCTTTTTGAGCAGAG
CTTGCAGGCGGTGAACCCGCGCCTGGCGCTGCCCTACTGGGACTACGTGA
GGGACTTTGAGGACCTCTACCAGTCCGGTGCGCCCCTATCGGCCCTCAAG
AACAAGGAGGGGCTCTTCACGGCCGATGTCTTTGGCGCC
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