mRNA_H-akashiwo_Contig948.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig948.5.1
Unique NamemRNA_H-akashiwo_Contig948.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 327 bits (838), Expect = 8.390e-110
Identity = 169/202 (83.66%), Postives = 172/202 (85.15%), Query Frame = 1
Query:    1 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 606
            LMVAVYVDDLVISGSSQA+VSEFKQSLASKY+LTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACK            +PG K      NLYRSMVGTLAWVANW RPELAFTVHKLQRTQINP P         FRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS
Sbjct:   31 LMVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPL-DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 231          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 228 bits (582), Expect = 3.560e-72
Identity = 122/153 (79.74%), Postives = 123/153 (80.39%), Query Frame = 1
Query:    1 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYL 459
            LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACK            +PG K      NLYRSMVGTLAWVANW RPELAFTVHKLQRTQINP P         FRYL
Sbjct:  117 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPI-DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 150 bits (378), Expect = 2.770e-38
Identity = 77/202 (38.12%), Postives = 126/202 (62.38%), Query Frame = 1
Query:    4 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGL-DYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 606
            +++VYVDD+V++ S ++ +S  K++++  YN++D GE+  ILGIKV RD+  +   LSQ SFI++A  KF +  Y P     +     +       + S+     +RS+VGT+ W+A W  PE+A+++H L +   +PS N L  S    RYL  T+ + + LGG L L A++D+DFC++R  G+S +G+ +FLG +PI+WS
Sbjct:  677 LISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWS 878          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A507DX52_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DX52_9FUNG)

HSP 1 Score: 122 bits (306), Expect = 2.130e-30
Identity = 70/202 (34.65%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    7 VAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRLGGDLV-LRAFSDSDFCNDRVDGKSVTGYILFLGDA-PIVWS 606
            ++VY+DDL I   +++ +S  K SL +K+N+TD GE+   LG++V  D   +  +L Q S++ D L +F    +   K +  PQ G                 YR +VG+L ++    RP++A  V  L R   NPSP  L+ +    RYL+GT + SL +GG+ V L  +SD+D+ N+ +D +S+TGY+  +G+A P+ W+
Sbjct:   70 ISVYIDDLFIFAKNESEISSIKASLHNKFNMTDLGEVNHYLGMRVRHDYTRRVIYLDQESYVNDILERF----VENTKTSPNPQEGE----------------YREIVGSLMYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWA 251          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A177U600_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U600_9BASI)

HSP 1 Score: 120 bits (300), Expect = 7.110e-28
Identity = 71/206 (34.47%), Postives = 114/206 (55.34%), Query Frame = 1
Query:    1 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHA-YSPGSKPSSLAL--NLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRLG-GDLV-LRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVW 603
            +++ VYVDD+ I+  ++ +VS+ K+   S + +TD G LT +LGI+++R K  +   +SQT ++   + ++G+D   +CK A+ P   S     P   P+S A   + Y +++G L W+A   R ++AF V KL R   NPS + +  +    RYL GT+   LR    DL  L  +SDSD   D    +SVT Y+ +L   P+ W
Sbjct:  354 VIILVYVDDVAIAAPTEEMVSDIKKQFTSWFKMTDNGPLTSMLGIRILRSKCGRVATMSQTGYVDQIIKRYGMD---SCKPANTPMAESFKDLVPREGPTSTAKERHFYAALIGCLLWLAQGTRMDIAFAVGKLARFMANPSDDHVSAAKRVLRYLAGTRELGLRFRHSDLAQLVGYSDSDHGADPTTRRSVTCYVFYLYGNPVTW 556          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A507DR08_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR08_9FUNG)

HSP 1 Score: 120 bits (300), Expect = 7.720e-28
Identity = 72/206 (34.95%), Postives = 119/206 (57.77%), Query Frame = 1
Query:    7 VAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*P--QCGSHAYSPGSKPSSL--ALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRLGGDLV-LRAFSDSDFCNDRVDGKSVTGYILFLGDA-PIVWS 606
            ++VYVDDL+I   +++ +S  K SL +++N T+ G++   LG++V RD      +L Q S++ D L +FG+     CK  + P  Q     Y   +  +S       YR +VG+L ++    RP++A  V  L R   NPSP  L+ +    RYL+GT + SL +GG+ V L  +SD+D+ N+ +D +S+TGY+  +G+A P+ W+
Sbjct:  417 ISVYVDDLLIFAKNKSEMSSIKASLHNEFNTTNLGKVNHYLGMRVRRDYTRHVIYLDQESYVNDILERFGMQ---DCKPVNTPMDQTKLEPYEVENTKTSPNPQEGEYREIVGSLMYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWA 619          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: UPI00080A5E7B (uncharacterized mitochondrial protein AtMg00810-like n=4 Tax=Phaseolus angularis TaxID=3914 RepID=UPI00080A5E7B)

HSP 1 Score: 115 bits (289), Expect = 4.230e-27
Identity = 69/207 (33.33%), Postives = 112/207 (54.11%), Query Frame = 1
Query:    1 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRLGG-----DLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 606
            L+V +YVDDL++ GS + ++SEFK  L S++ ++D G+L+  LGI+    +     H  Q+ ++ D L +F    +  C  A+ P              ++ L  YRS+VG+L ++ N  RP+L++ V  + R    P  + L       RYL+GT S  + LG      ++ + ++SD+D+C D+ D KS  GYI F+G  PI WS
Sbjct:   75 LIVCLYVDDLLVIGSCEELISEFKLQLLSEFEMSDLGKLSYFLGIEFTETENGIVMH--QSRYVLDLLKRFE---MVDCNAANTPAEVGLRLEKEPDEEAVDLTAYRSIVGSLRYLCN-TRPDLSYNVGVVSRYMECPRMSHLNAVKRILRYLQGTHSYGILLGRGETREEVQITSYSDADWCGDKEDRKSTAGYIFFMGGTPISWS 275          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A1S3TG16_VIGRR (uncharacterized protein LOC106755098 n=1 Tax=Vigna radiata var. radiata TaxID=3916 RepID=A0A1S3TG16_VIGRR)

HSP 1 Score: 111 bits (278), Expect = 1.270e-26
Identity = 69/207 (33.33%), Postives = 110/207 (53.14%), Query Frame = 1
Query:    1 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRL-----GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 606
            ++V +YVDDL+I+GSS   + +FK  +  ++ ++D G+L+  LGI+  +       H  Q+ +  D L KF + +   C  A+ P           +   +    YR MVG+L ++ N  RP+++++V  + R   NP  + L       RYLKGT    + L     GGD+ + A+S SD+C D+ D KS+ GY+ FL  API WS
Sbjct:   29 VIVCLYVDDLLITGSSVQKIVDFKLQMLQEFEISDLGQLSYFLGIEFTKTDEGILMH--QSRYALDMLTKFNMLH---CNPANTPTEMGVKLEKDLEEEVVDPTKYRRMVGSLRYLCN-TRPDISYSVGLVSRFMQNPRISHLNAIKRILRYLKGTTKYGILLPKSGSGGDVRVTAYSYSDWCGDKGDRKSIAGYVFFLDGAPISWS 229          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: A0A151S6M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S6M8_CAJCA)

HSP 1 Score: 116 bits (291), Expect = 1.300e-26
Identity = 73/204 (35.78%), Postives = 115/204 (56.37%), Query Frame = 1
Query:   13 VYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALN--LYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVR--FRYLKGTQSESLRL--GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 606
            +YVDD++I+GSS + +S F + L   + L D G L   LG++  RD      +L QT ++ D L KF L+++ +C     P     + S   + + L  N  LYR  +G L ++ N  RP++A++V++L  +Q   +P  +   SV+  FRYLKGT +  L +    DL +  FSD+D+  +  D KSV GY +FLG++ I WS
Sbjct:  959 IYVDDIIITGSSSSFLSSFIKQLNIMFALKDLGSLHYFLGVEACRDASG--LYLKQTKYVLDLLKKFNLEHVSSCPT---PMVTGRSLS---EEAELMKNPTLYRRAIGVLQYLTN-TRPDIAYSVNRL--SQYMQAPTTIHWQSVKRVFRYLKGTMNHCLHIKPSVDLDITGFSDADWATNIEDRKSVAGYCVFLGESLITWS 1151          
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Match: UPI001F5EB428 (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5EB428)

HSP 1 Score: 113 bits (283), Expect = 1.480e-26
Identity = 68/207 (32.85%), Postives = 111/207 (53.62%), Query Frame = 1
Query:    1 LMVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKNAS*PQCGSHAYSPGSKPSSLALNLYRSMVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQSESLRL-----GGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS 606
            ++V +YVDD++I+GSS   +++FK  +  ++ ++D G+L+  L I+          H  Q+ +I D L KF +D    C +A+ P           +  ++    YR MVG+L ++ N  RP+++++V  + R   NP  + L       RYLKGT    + L     GG++ + A+SDSD+C D+ D KS  GY+ F   API WS
Sbjct:   29 VIVCLYVDDMLITGSSDERINKFKAQMLHEFEMSDLGKLSYFLRIEFTTTDTGMMMH--QSRYITDMLTKFNMDQ---CNSATTPAEVGIKLEKDPEEEAVDPTEYRRMVGSLRYLCN-TRPDISYSVGLVSRFMQNPRVSHLNAVKRILRYLKGTIEYGILLPKHGSGGEVRVIAYSDSDWCGDKGDRKSTAGYVFFFDGAPISWS 229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig948.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK8.390e-11083.66Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK3.560e-7279.74Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK2.770e-3838.12Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A507DX52_9FUNG2.130e-3034.65DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A177U600_9BASI7.110e-2834.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DR08_9FUNG7.720e-2834.95DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
UPI00080A5E7B4.230e-2733.33uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A1S3TG16_VIGRR1.270e-2633.33uncharacterized protein LOC106755098 n=1 Tax=Vigna... [more]
A0A151S6M8_CAJCA1.300e-2635.78Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F5EB4281.480e-2632.85uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig948contigH-akashiwo_Contig948:117560..118168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo127925
PFAMsRVT_2,rve
Model size609
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-14
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QIR3@4776|Peronosporales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size285
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.834299-CDS-H-akashiwo_Contig948:117559..1178441681388054.834299-CDS-H-akashiwo_Contig948:117559..117844Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig948 117560..117844 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388054.846374-UTR-H-akashiwo_Contig948:117844..1181681681388054.846374-UTR-H-akashiwo_Contig948:117844..118168Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig948 117845..118168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig948.5.1prot_H-akashiwo_Contig948.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig948 117560..117844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig948.5.1

>prot_H-akashiwo_Contig948.5.1 ID=prot_H-akashiwo_Contig948.5.1|Name=mRNA_H-akashiwo_Contig948.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=95bp
MVGTLAWVANWARPELAFTVHKLQRTQINPSPNILRQSSVRFRYLKGTQS
ESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWS*
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mRNA from alignment at H-akashiwo_Contig948:117560..118168-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig948.5.1 ID=mRNA_H-akashiwo_Contig948.5.1|Name=mRNA_H-akashiwo_Contig948.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=609bp|location=Sequence derived from alignment at H-akashiwo_Contig948:117560..118168- (Heterosigma akashiwo CCMP452)
CTCATGGTTGCGGTCTACGTCGATGATCTGGTCATCAGTGGCAGCTCTCA AGCTATTGTCTCTGAGTTCAAGCAGTCTCTCGCATCCAAGTACAATCTCA CTGATCAAGGGGAGCTCACCCAGATCCTTGGCATCAAAGTTGTTCGCGAT AAGCGGAACAAGTGTTTTCATCTTTCCCAGACCTCCTTCATCAAGGACGC ACTGGCTAAATTCGGCCTCGACTATCTTCCAGCGTGTAAAAACGCCTCTT GACCACAATGTGGATCTCACGCCTACTCCCCGGGTTCAAAGCCGAGCTCT CTGGCCTTGAACCTGTATCGATCCATGGTTGGGACGCTGGCCTGGGTTGC GAACTGGGCGAGACCGGAGCTTGCTTTTACAGTCCACAAGCTTCAGCGTA CTCAGATTAATCCGAGCCCAAACATTTTGAGGCAGTCCAGCGTGCGTTTT CGGTACCTGAAGGGCACCCAGTCTGAGTCCCTGCGGCTGGGTGGTGATCT AGTGCTACGAGCTTTTTCCGATTCGGACTTCTGTAATGACCGTGTTGATG GGAAGTCAGTTACTGGCTATATTCTCTTTCTGGGTGATGCACCTATTGTC TGGTCTTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig948:117560..118168-

>mRNA_H-akashiwo_Contig948.5.1 ID=mRNA_H-akashiwo_Contig948.5.1|Name=mRNA_H-akashiwo_Contig948.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=285bp|location=Sequence derived from alignment at H-akashiwo_Contig948:117560..118168- (Heterosigma akashiwo CCMP452)
ATGGTTGGGACGCTGGCCTGGGTTGCGAACTGGGCGAGACCGGAGCTTGC
TTTTACAGTCCACAAGCTTCAGCGTACTCAGATTAATCCGAGCCCAAACA
TTTTGAGGCAGTCCAGCGTGCGTTTTCGGTACCTGAAGGGCACCCAGTCT
GAGTCCCTGCGGCTGGGTGGTGATCTAGTGCTACGAGCTTTTTCCGATTC
GGACTTCTGTAATGACCGTGTTGATGGGAAGTCAGTTACTGGCTATATTC
TCTTTCTGGGTGATGCACCTATTGTCTGGTCTTGA
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