mRNA_H-akashiwo_Contig947.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig947.6.1
Unique NamemRNA_H-akashiwo_Contig947.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A7S4D9L0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9L0_HETAK)

HSP 1 Score: 102 bits (254), Expect = 4.390e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 AGRLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAAQL 166
            AGRLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAAQL
Sbjct:  483 AGRLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAAQL 537
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: F0Y6I4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6I4_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 5.690e-10
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAA 160
            RLE+EY KSLQR+NPH  EYV RLRDE  +  LAA  QAYY RVGD  AAA
Sbjct:  373 RLEDEYVKSLQRINPHTHEYVSRLRDEAPLTDLAAGVQAYYVRVGDDKAAA 423
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A835YUE3_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.700e-10
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGD 145
            RLEEEY KSLQ++NPH  EY+LRL+DE  +VQLA   Q YY R GD
Sbjct:  490 RLEEEYTKSLQKINPHTAEYILRLKDESAIVQLAGAIQGYYVRAGD 535
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: D8LM18_ECTSI (Eukaryotic translation initiation factor 3 subunit C n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM18_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 7.790e-10
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAAQL 166
            RL +EY KSLQ +NPH  EY+ RL+DE +VV LAA+ QAYYER G+ S  A L
Sbjct:  479 RLGDEYTKSLQNINPHTQEYIRRLKDESVVVDLAAKVQAYYERQGEMSVVADL 531
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A7S2UU87_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU87_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.090e-9
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVG 142
            R+ EEY KSLQ +NPH  EY+ RL+DE L+V LAA+ QAYY RVG
Sbjct:  488 RINEEYVKSLQHINPHTQEYIARLKDEALIVALAAKVQAYYVRVG 532
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A7R9W1A8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W1A8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.770e-8
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAAQL 166
            RL+EEY KSLQR++PH  EYV RLRDE  +V+L A+ Q Y+ R+G    AA+L
Sbjct:  137 RLDEEYTKSLQRISPHTSEYVERLRDEAGLVELLAKVQGYFTRIGSNEEAAEL 189
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A7S4E4E4_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4E4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.430e-8
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAA 160
            RLE+EY KSLQ +NPH  EYV RLRDER + +LA   QAYY+R G    AA
Sbjct:  446 RLEDEYVKSLQHINPHTQEYVARLRDERPLEELAGSIQAYYDRSGSTETAA 496
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BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A1V9YGK5_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGK5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.510e-8
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGD 145
            RL +EY KSLQ+++PH  EY+ RL DE L+ +LA R QAYY R+GD
Sbjct:  461 RLNDEYTKSLQQMDPHTAEYIARLYDEALLSELARRVQAYYVRIGD 506
[Close]
BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A316YN60_9BASI (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YN60_9BASI)

HSP 1 Score: 53.9 bits (128), Expect = 5.570e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYE 133
            RL++E+ KSLQ ++PHAPEYV RL DE+L+ Q   RAQ YYE
Sbjct:  399 RLDDEFTKSLQNIDPHAPEYVERLSDEKLLYQTIIRAQVYYE 440
[Close]
BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Match: A0A7S2HV13_9STRA (Eukaryotic translation initiation factor 3 subunit C n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HV13_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.620e-7
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 2 
Query:    8 RLEEEYRKSLQRLNPHAPEYVLRLRDERLVVQLAARAQAYYERVGDRSAAA 160
            RL+EEY K+LQ++NPH  EYV+RLR E  +V+L    Q YYER+ D   AA
Sbjct:  445 RLDEEYTKALQKINPHTVEYVVRLRMESQLVKLCTTVQQYYERIEDMKNAA 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig947.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D9L0_HETAK4.390e-24100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
F0Y6I4_AURAN5.690e-1068.63PCI domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A835YUE3_9STRA5.700e-1065.22Eukaryotic translation initiation factor 3 subunit... [more]
D8LM18_ECTSI7.790e-1060.38Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2UU87_9STRA5.090e-964.44Eukaryotic translation initiation factor 3 subunit... [more]
A0A7R9W1A8_9STRA1.770e-856.60Hypothetical protein (Fragment) n=2 Tax=Pseudictyo... [more]
A0A7S4E4E4_9STRA2.430e-860.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A1V9YGK5_9STRA8.510e-858.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A316YN60_9BASI5.570e-761.90Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2HV13_9STRA7.620e-754.90Eukaryotic translation initiation factor 3 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig947contigH-akashiwo_Contig947:210147..213613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.9485223-CDS-H-akashiwo_Contig947:210146..2102671681388053.9485223-CDS-H-akashiwo_Contig947:210146..210267Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 210147..210267 +
1681388053.9597416-CDS-H-akashiwo_Contig947:213566..2136131681388053.9597416-CDS-H-akashiwo_Contig947:213566..213613Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig947 213567..213613 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig947.6.1prot_H-akashiwo_Contig947.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig947 210147..213613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig947.6.1

>prot_H-akashiwo_Contig947.6.1 ID=prot_H-akashiwo_Contig947.6.1|Name=mRNA_H-akashiwo_Contig947.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
RRAAGGGVPQEPAAPQPARARVRAAPARRAARGAAGRPRPGVLRARGGPV
GGRAAL
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mRNA from alignment at H-akashiwo_Contig947:210147..213613+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig947.6.1 ID=mRNA_H-akashiwo_Contig947.6.1|Name=mRNA_H-akashiwo_Contig947.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3467bp|location=Sequence derived from alignment at H-akashiwo_Contig947:210147..213613+ (Heterosigma akashiwo CCMP452)
CGCCGGGCGGCTGGAGGAGGAGTACCGCAAGAGCCTGCAGCGCCTCAACC
CGCACGCGCCCGAGTACGTGCTGCGCCTGCGCGACGAGCGGCTCGTGGTG
CAGCTGGCCGCCCGCGCCCAGGTGACTGAGCCCCCCTGCTCCTCTCCCTC
TTCTCCTCCTCCTCCCCCTCCTCTCCTCGGGGAGAGAGGGAAAGGCGTCT
TGAGCAGCACCCCCCCCCCCTGCTCCCCACTTGCCGCTGCGGGCTGAACG
ACCAAGGAGAGCAGCGACGCAAGTGGTGCAGCATATTTAACAAGACCGGC
TCTACAGGGCACAAGCGACCTCGCCGGTGCCGCTCCCTCTCCAGCACTGC
ACATCATGCCGCGTCTCAACATCATGTTCATCAACATAAACAGAGCTGAA
ACGAGTCACTGTGCGGGTACGTATGTTTGAGCCACGACTACTTGATGTGC
GCTCTGACGGATCGAAACATGCGCGTCCAAAAATTTCAAAACGAAGCTTA
TCATTTTTTAATTTTATTTTTTATTCTCTGGTAAACTATTTTTTTCAAAG
GTGCAAATGAGTGTATAAAATAATGTGAATGGTGTTTTATTTTTGTTGCT
CTCTCGTGCGACCCGGCATATCGCATACCGCATAAAGAAATATAAACGTT
AAAACTACACGCAGTCAGTTCTTGCTGCAGAGTGCGATATAGCCTTCTTC
AAGGCAGATACGTGAAGACTGACCGCACAGAACACCAGTGAAAGTGCAGT
AGCTTCTCCTCTCTACTATGCTGCTTCACGGGAAATACAGATTATGATGA
ATCACGGAGTGTAATATGAACATATCATGCATATATATCCTGTTCTTCTT
TTTTTGGATGATGATGGAAGAATTTCTGCAGCTGATTACAATATGCAAGC
TGCTGCTGCTGCTGCCGTACATGTCTCTTCAATTATTTCATTATGATTGA
TCTCCTTCTTCTATAAAAAATACAAAAATAATCTCGTCAATGTTGTTGCT
CCTTGTGACCAAGATTATTCACATTCTTCAAAAAGATTTGATAAGCTTCA
CCCTCGTGTGCTTGGCAATAATGATTGGTGAATCCAGCTACAGTTTGGGA
GTAGCTGCACGTTACTAGCCACTATCCCACGCATGTGTAAGGCGTTCCAT
ATCAAAATTGGCTCCCCTTTTCTTCAAGTATGGATACAACGGTACGTGAT
GATGCGATGGGTTTCACTGGCATGATAGGGGTAACGGTCTCCGACATAGG
CATTTCAGCCAGCTTGCCTTCTTCTTTTACTAACAAGGATGCAACTGCAA
TGACTGGCGAAGCTTTGAAGACCAACATGGGCCTACTAAAGTGGCTCCTG
CAGTGCTGTTACCCGGTTTTGGCCCTTCTAAAAGCCCGGCACACCTATGC
TAGAACGGGCTGACATGTGCAAATATGAGACCAATCTTCTGCGAACAGCA
CCTTTTTTTTTTGGAATTCATGAGTGTGATTGACCCCAATGACCCCGATG
CATGCATCTATGCTGTCAAACTCGTATCTTCTTGGCAGTGTGGGTTTTGA
TAAATGTGTGGTAAACGATCTATTGGAATGCCATGAATAATTTATCATGT
ACCCGAATTTGATTTCATCATTCATGATCTTTTCATTGTGAAAGTGATGA
ATGACTCACCTAGGAATCATACCTCGTGAACCGAGGAGACTACTCGTGAC
TCCCCTACGCAcccccCCCCCCCTCCTCTCCTTGATGGGGAAGAGGGAGA
GGCTTTCAAGGAGCCCGGGACTTTGTTGGCATCCACCAAAAATGCCGATG
CAGAATTTGAACAGTCCCTATAGTTACACCACTGAATTGAAGATTAATGT
CTGCCGCCAAACTGAATTTTCTCATAATCAATGATCGTACCCTGAGGTGT
TCTGGTGCTGTCGCCAGTAGTCTTTCCCTGCTCACGAGGTATGATTCCTG
GGTGGTCATTCATCACTTTCACAATGAAAAGATCATGAACGATGAGGTCA
AATTCGGGTACATGATATATTCATGGCATTCTACAAGATCGTTTACCACA
CATTTATCAAAACCCACACTGCCAAGAAAATACAAATTTGGCAGCATAGA
AGCATGCATCGGGGTCATCGGGGTCAATCACACTCATGAATTCCAAAAAA
AAAAGGTGCTGTTCGCAGAAGATTGGTCTCATATTTGCACATGTCGGCAC
GTTCTAGCATAGGTGTGCCGGGCTTTTAGAAGGGCCAAAACCGGGTAACA
GCACTGCAGGAGCCACTTTAGTAGGCCCATGTTGTTCTTCAAAGCTTCGC
CAGTCATTGCAGTTGCATCCTTGTTAACAAAAGAAGAAGGCAAGCTGGCT
GAAATATACCTATGTCGGAGACCGTCGCCCCCATCATGCCATCGAAGCCC
ATCGCATCATCACGCACCGTTGCATCCATACTTGAAAAAAGGGGGATCCA
ACTTTGATCTGGAACGCCTGACAGATGCGTGGGATAGTGGCTAGCAACGC
GCAGCTACTCCAAACTGTAGCTGGATTCACCAATCATTATTGCTAAGCAC
ACGAGGGTGAGGCTTATATGATTTTTTAATGATGCATGTGAGAATAATCT
TGCTCACAAGGAGTGACAACAACAACAACGAGATCATCTTTATACATCAA
TCATAATAAAAAATCATTGAAGAGACATGTATATATATGGCAGCAGCACC
AGCCTGTAGAAATTCTTCCATCATCCAACAGAAGAAGAAGAAGAGAAAAG
ATTGATATTGCGCTCCATGGTTCATCATAATCTGTATTTCCATTGGGGCA
GCATGGTGGAGGAGAAACTATTGCGCTTTCACTGTCGTTCTGTTTATTGA
GATACTCAGATAGCATCTCCATAGCTTCTAGTTTTTGCTGGTCTATGATG
TGGACTCACCCAGTATGGGTAATGAAGGCAGTATCACTGCCTACGCATGC
TGAAGGTCTAGCTACTCGGATTACTCTAGGGCCCGAAGCCCCGGCCTCCA
CAAGCGGGCCTCTAGATCCCACTTCTCAGACTCCAATCCATCACCACCAA
ATCTTAAGAAGGCAGCCACCGACTTCCAGCCACACACATTCCACTTGCCA
GTCGcccccCCCCCCATAAACCCCCCTACTCCTTGTGCCCCCCCCCCCAA
ACATCGCCCCCCCAAACATCGCCACAGTCCCAGTTGCTGAAGGTCCACGG
CGATGGTATGAAACGGTTATTAACTAATCTTCTGGTAAATGATGAGCCTC
TCCAGCTCCCGAAGGTTCGACATGAAGCCACGCCTTCTTCACAGGGGCAT
CAAGTCAGCACACAAACACCAATGTGTGTATGTGAAGGGGCGCATTTTGC
AAGCAGAACATTAAAAAAAATGTACCCTTCACCTTGGTTGGTCTTGGTGT
TTGGGGGGGGCGTGGGGCAGGCGTACTACGAGCGCGTGGGGGACCGGTCG
GCGGCCGCGCAGCTCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig947:210147..213613+

>mRNA_H-akashiwo_Contig947.6.1 ID=mRNA_H-akashiwo_Contig947.6.1|Name=mRNA_H-akashiwo_Contig947.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig947:210147..213613+ (Heterosigma akashiwo CCMP452)
CGCCGGGCGGCTGGAGGAGGAGTACCGCAAGAGCCTGCAGCGCCTCAACC
CGCACGCGCCCGAGTACGTGCTGCGCCTGCGCGACGAGCGGCTCGTGGTG
CAGCTGGCCGCCCGCGCCCAGGCGTACTACGAGCGCGTGGGGGACCGGTC
GGCGGCCGCGCAGCTCTG
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