mRNA_H-akashiwo_Contig945.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig945.4.1
Unique NamemRNA_H-akashiwo_Contig945.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig945.4.1 vs. uniprot
Match: A0A7S3UQZ1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQZ1_HETAK)

HSP 1 Score: 103 bits (257), Expect = 5.860e-25
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 QMVLSLKGSIECLGIPKKRVREWYLSYIEILQRLGLCQAANELINLSSDE 150
            QMVLSLKGSIECLGIPKKRVREWYLSYIEILQRLGLCQAANELINLSSDE
Sbjct:  210 QMVLSLKGSIECLGIPKKRVREWYLSYIEILQRLGLCQAANELINLSSDE 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig945.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UQZ1_HETAK5.860e-25100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig945contigH-akashiwo_Contig945:104217..104701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size152
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.4573321-UTR-H-akashiwo_Contig945:104216..1042191681388053.4573321-UTR-H-akashiwo_Contig945:104216..104219Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig945 104217..104219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388053.471067-CDS-H-akashiwo_Contig945:104219..1043011681388053.471067-CDS-H-akashiwo_Contig945:104219..104301Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig945 104220..104301 +
1681388053.479753-CDS-H-akashiwo_Contig945:104636..1047011681388053.479753-CDS-H-akashiwo_Contig945:104636..104701Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig945 104637..104701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig945.4.1prot_H-akashiwo_Contig945.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig945 104220..104701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig945.4.1

>prot_H-akashiwo_Contig945.4.1 ID=prot_H-akashiwo_Contig945.4.1|Name=mRNA_H-akashiwo_Contig945.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=49bp
MVLSLKGSIECLGIPKKRVREWYLSYIEILQRLGLCQAANELINLSSDE
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mRNA from alignment at H-akashiwo_Contig945:104217..104701+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig945.4.1 ID=mRNA_H-akashiwo_Contig945.4.1|Name=mRNA_H-akashiwo_Contig945.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=485bp|location=Sequence derived from alignment at H-akashiwo_Contig945:104217..104701+ (Heterosigma akashiwo CCMP452)
CAGATGGTTTTGTCTTTGAAAGGCAGTATCGAATGTCTTGGTATACCAAA
GAAAAGAGTACGGGAGTGGTACTTGTCATACATAGGTGAGTACATCAGAC
TAGAGCACTTGCGGTTATTTAGGGTGCTGACGAAGGAACAGAACCGAAAT
ATCAACGCTGTGCATTTGTAAAAGTTGTGAAAGCGAAGCAAAAGTATTGT
ACTGGGATTTACTTTTATAGTTACTTGCTCACAACCTAACACTTTCCTCT
TTCTTTAAATATTATCTTAATAAACATACTAAACACTATGTTGTGTGATA
CACTAATACTAACAAGATGCTGTATTGTTTGTGGTGCGCTTGCTATATAC
TACTACGAAGAGCTAAATGCAAATGATTGTAAATCAAGTGTTGATAGCAT
TATACTATCTTTTCCTGCAGAAATCTTGCAGCGTCTGGGCCTTTGCCAAG
CAGCAAATGAACTAATCAACCTTTCCAGTGACGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig945:104217..104701+

>mRNA_H-akashiwo_Contig945.4.1 ID=mRNA_H-akashiwo_Contig945.4.1|Name=mRNA_H-akashiwo_Contig945.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=147bp|location=Sequence derived from alignment at H-akashiwo_Contig945:104217..104701+ (Heterosigma akashiwo CCMP452)
ATGGTTTTGTCTTTGAAAGGCAGTATCGAATGTCTTGGTATACCAAAGAA
AAGAGTACGGGAGTGGTACTTGTCATACATAGAAATCTTGCAGCGTCTGG
GCCTTTGCCAAGCAGCAAATGAACTAATCAACCTTTCCAGTGACGAG
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